G749807


Basic Information

Item Value
gene id G749807
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 78469792 ~ 78481035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU851224
CCACCAATCCAGCAATGGTTAGTATCGCTTCAGCCCCAAATCACCATACGTTTTAACACAGTAAGTCGATATTGTTGCTTTATCACACAAGACAAAACTTAATGGAAGcactgtattatcactaggttgttactagactattaccatgttttaaatcagggatgggcagaatatcatcactgtattatcactaggttgttactagactattaccatgttttaaatcagggatgggcagaatatcatcactgtattatcactaggttgttactagactattaccatgttttaaatcagggctgggcagaatatcatcactgtattatcactaggttgttactagactattaccatgttttaaatcagggcTGAGCAGAATCTGCAGGAGCAGAATAtcatcactgtattatcactaggttgttactagactattaccatgttttaaatcagggctgggcagaatatcatcactgtattatcactaggttgttactagactattaccatgttttaaatcagggctgggcagaatatcatcactgtattatcactTGgttgttactagactattaccatgttttaaatcagggctgggcagaatatcatcactgtattatcactaggatgttactagactattaccatgttttaaatcagGTCTGGGCAGAATAtcatcactgtattatcactaggttgttactagactattaccatgttttaaatcagggctgggcagaatatcatcactgtattatcactaggttgttactagactattaccatgttttaaatcagggcTGAGCAGAATCTGGAGGAGCAGAATAtcatcactgtattatcactaggttgttactagactattaccatgttttaaatcagggctgggcagaatatcatcgctgtattatcactaggttgttactagactattaccatgttttaaatcagggcTGAGCAGAATCTGCAGGAGCAGAATAtcatcactgtattatcactaggttgttactagactattaccatgttttaaatcacggctgggcagaatatcatcactgtattatcactaggttgttactagactattaccatttttttaaatcagggctgggcagaatatcagcactgtattatcactaggttgttactagactattaccatgttttaaatcagggctgggcagaatatcatcactgtattatcactaggttgttactagactattaccatattttaaatcagggctgggcagaatatcatcactgtattatcactaggttgttactagactattaccatgttttaaatcagggctgggcagaatatcatcactgtattatcactaggttgttactagactattaccatgttttaaatcagggctgagcagaatatcatcactgtattatcactaggttgttactagactattaccatgttttaaatcagggctgggcagaatatcatcactgtattatcactTGgttgttactagactattaccatgttttaaatcagggctgagcagaatatcatcactgtattatcactaggttgttactagactattaccatgCTTTAAATCAGGGCTGAGCAGAATAtcatcactgtattatcactaggttgttactagactattaccatgttttaaatcagggATGGGCAGAATCTGCAGGAGCAGAATATAATTACGGATTATTTGCAATGATACAAATACAATAATGCTTGCAATTTTAGCCTAAATAATATACTCATCATAATGAGCTGACCCAAAGGAGCACATGGCGTAACACAGCACAACaacataacagacagacagcgagagacagcaacaacaaccagacagacagacagcaacaaaaaccaaacagacagacagcgagagacagctacaacaaccaaacagacagacagcgagagacagctaCAACAtccaacagacagacagcgagagacagctacaacaaccaaacagacagacagcgagagacagctacaacaaccaaacagacagacagcgagagacagctacaacaacataacagacagacagcgagagacagctacaacaaccaaacagacagacagcgagagacagctacaacaaccaaacagacagacagaaagacagacatacAGCATAACACAGCACAAcagccaaacagacagacagctacaacaaccaaacagacagacagcgagagacagctacaacaaccaaacagacagacagccagagacagatagacaagacagacagacagacagagacagacacagacagacagacagacagacagacagcataacACAGCACAACAAccaaacagacagagagcgagagacagctacaacaaccaaacagactgacagacagacagcacaacaaccaaacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagcgagagacagcacaacaaccaaacagacagacagcgagagacagctacaacaacataacagacagacagaaagacagctacaacaacataacagacagacagctacaacaacaaaaaagacagacagctagagacagctacaacaacataacagacagacagctagagacagctacaacaacataacagacagacagctagagacaactacaacaacaaaacagacagacagctagagacagctacaacaacataacagacagacagctagagacagctacaacaacataacagacagacagctagagacaactacaacaacataacagacagacagcgagagatagctacaacaacataacagacagacagctagagacagctacaacaacataacagacagacagcttgagacagctacaacaacataacagacagacagctagagacagctacaacaacataacagacagacagctagagacagctacaacaaccaaacagacagacagctagagacagctacaacaacataacagacagacagctagagacaactacaacaacataacagacagacagcgacagatagacaagacagacagacagacagagacagacacagacagacacacagacagacagacagacagacagacagcataacACAGCACAACAAccaaacagacagagagcgagagacagctacaacaaccaaacagactgacagacagacagcacaacaaccaaacagacagacagacagacagacagacagacagacagacagacagacagcaagagacAGCACAAcaaccaaacagacagacagcgagagacagctacaacaacataacagacagacagaaagacagctacaacaacataacagacagacagctacaacaacaaaaaagacagacagctagagacagctacaacaacataacagacagacagctagagacagctacaacaacataacagacagacagctagagacaactacaacaacataacagacagacagctagagatagctacaacaacataacagacagacagctagagacagctacaacaacaaaacagacagacagctagagacagctacaacaacataacagacagacagctagagacagctacaacaacataacagacagacagctagagacaactacaacaacataacagacagacagcgagagatagctacaacaacataacagacagacagctagagacagctacaacaacataacagacagacagcttgagacagctacaacaacataacagacagacagctagagacagctacaacaacataacagacagacagctagagacagctacaacaaccaaacagacagacagctagagacagctacaacaacataacagacagacagctagagacagctacaacaacataacagacagctagagacagctacaacaacataacagacagacagctagagacagctacaacaacataacagacagacagctagagacagctacaacaacataacagacagacagcgagagacagctacaacaacataacagacagacagcgagagacagctacaacaaccaaacagacagacagcgagagacagctacaacaacataccagacagacagagagagacagc
>TU851225
tgtattatcactaggttgttactagactattaccatgttttaaatcaggtctgggcagaatatcatcagtgtattatcactaggttgttactagactattaccatgttttaaatcagggctgggcagaatatcatcactgtattatcactaggttgttactagactattaccatgttttaaatcagggctgggcagaatatcatcactgtattatcactaggttgttactagactattaccatgttttaaatcagggcTGAGCAGAATCTGCAGGAGCAGAATAtcatcactgtattatcactagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU851224 False 4118 lncRNA 0.41 5 78469792 78481035
TU851225 True 306 lncRNA 0.36 2 78472585 78473265

Neighbor

gene id symbol gene type direction distance location
onecut3b onecut3 coding upstream 108321 78335901 ~ 78361471 (+)
LOC110530995 LOC106569526 coding upstream 281743 78072559 ~ 78188049 (+)
LOC110530688 LOC106569524 coding upstream 423018 78038094 ~ 78046774 (+)
LOC110530687 LOC106569523 coding upstream 492000 77973674 ~ 77977792 (+)
LOC110530684 LOC106569521 coding upstream 505931 77954717 ~ 77963861 (+)
LOC110530701 LOC106569539 coding downstream 111263 78592298 ~ 78597767 (+)
plekhj1 plekhj1 coding downstream 126378 78607413 ~ 78610245 (+)
LOC110530703 LOC106569538 coding downstream 145486 78626521 ~ 78636077 (+)
LOC110530704 LOC106569544 coding downstream 335085 78816120 ~ 78824322 (+)
LOC110530706 LOC106569546 coding downstream 349650 78830685 ~ 78861909 (+)
G749781 NA non-coding upstream 36729 78432686 ~ 78433063 (+)
G749715 NA non-coding upstream 107086 78362240 ~ 78362706 (+)
G749734 NA non-coding upstream 133950 78335637 ~ 78335842 (+)
G749731 NA non-coding upstream 138591 78331000 ~ 78331201 (+)
G749662 NA non-coding upstream 179781 78288574 ~ 78290011 (+)
G749814 NA non-coding downstream 11726 78492761 ~ 78499803 (+)
G749834 NA non-coding downstream 47392 78528427 ~ 78528683 (+)
G750399 NA non-coding downstream 76311 78557346 ~ 78557623 (+)
G750426 NA non-coding downstream 102551 78583586 ~ 78583799 (+)
G749663 tcf3 other upstream 224177 78244210 ~ 78245615 (+)
LOC110530993 LOC106569518 other upstream 582436 77863590 ~ 77887401 (+)
G749137 NA other upstream 1087181 77302737 ~ 77382611 (+)
G748959 LOC106569508 other upstream 1197132 77266652 ~ 77272660 (+)
G748917 NA other upstream 1289664 77179344 ~ 77180128 (+)
G750533 LOC106569543 other downstream 316107 78797142 ~ 78797548 (+)
G750854 NA other downstream 498195 78979230 ~ 78979981 (+)
G750935 NA other downstream 714235 79195270 ~ 79197378 (+)
ncana LOC106569686 other downstream 864402 79210727 ~ 79347454 (+)
LOC110530726 LOC106600567 other downstream 1067462 79548127 ~ 79579010 (+)

Expression


Co-expression Network