XLOC_026451 (arl6ip1)


Basic Information

Item Value
gene id XLOC_026451
gene name arl6ip1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31104891 ~ 31115996 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051548
CATCTATTTTTGAACGTGAACTACATTTCCCATGAGTCCTTGTATTCCGAGTTTCAGATAAAAACATCCTGAAAATAACGGTCGCTTGACAGACTGCCGCAGTGGAGGGGGGAGACGCGTTCATATAATCGTGCTCCGAGGAACCTAAACTCTCAAGTAACATCTAATAAACCATGGCTGAGGGCGACAATAAAAGTGCAAATCTGTTGGCTCAAGAGACGAGTCAGTTGGAAGAGCAACTGCAGGGATGGGGAGAGGTCATCCTGGCTGGAGATCAGATCCTGCGCTGGGAGAAGCCATGGTTCCCTGGTGCATTAGTGAGCGTTACTACAATCCTCTTCACGCTGATCTACTACCTGGACCCCTCTGTGCTCACTGGTCTGTCCTGCACTGTCATGATCCTGTGCCTGGCTGATTACCTTGTGCCCACTCTTGCTCCTCGTGTCTTTGGTTCCAACAAATGGACCACAGAACAGCAGCAGCGTTTTCATGAGATCTGTGGAAACCTTGTGAAGACTCAGCGCCGTGTGCTCGGCTGGTGGAAACGTCTGTTTGCCCTGAAGGAAGAAAAGCCAAAAATGTATTTCCTCTCTGTGATCAGCAGTCTTGTGGCTGTGGCCTGGATTGGACAACAAGTTCATAACCTCTTCCTCACCTACCTGATAGTGAGTTTCCTTCTGCTGCTTCCTGGCCTCAACCAGCATGGCATCATCACCAAATATGCTGGCATGGCAAAGAGAGAAATCAACAAACTTCTTAAACAGAAGGAGAAGAAGAACGAGTAAAAGATAAAGCTCGAGTGAAAACAATTCAGAAGGCTGAAAATTCAGACAAATTTGAGTTTAATGTGGTCATCTTCCCTGCTTATCGTCAAATTTCCACAGACCAACGTAAAGCTTTTGCAGAAACTAAGCTGATAGTGATAAGTAACATCTAGAGAACAGCTTAAATGTATGCAGAGATCTCTTAAGGTTCACGTATAACTTTGTTTTTAGGTTTCAGTTTGAAGTATACATTTGTTTTCCatcaaaagtgttttattttttcaatgctGAAATACTCATTTCAGCTCTTACAGTCATGTATATTTGCATGTCATAGCACATTTAATAAGTCTGTGCAAAATATAGAGCGCTTAATTTCTTTGAATCTGTTAAATTTGCAAGGCATCTGCCCAATATTTGCTTTAACCAATTAGATGCACAGAACACATCATCAGAATTCATGAAATGTAGCCTTTTTGTCTATGAATGGCTTGGAAACATGCATTTCTGCACTGTTCTGAAAATTGCACTGGAAAACCTGAACTGGAGTGTTTGTGAAGGGGACGTTAGACCCATACTGCTGTACTAGTGCTGTGTGGACCCTCATTACTGTCCTCTAGCTCTAGCCATTTTCCAATTGAAAACCtctcgttgtgtgtgtgtgtgagtgtgcgcgtgtgtgtgtatatatttatacacgtTCATTTCCTCTCTGTTGTGTGTTCTATCAGCTTGTCTTAAGTTTGTCTTCTCTCCATGTCATTTTACCTGTCGTTTTGTTTGTGTTCTTTAAAGCATTAAACTGATTTGAAACTAGATTTTGTAA
>TCONS_00051549
ttttaatttcGCAAAACATTTATTACTTGCTATTGTGGTGGTTAAATGTATTTTAGATATTGTAATTAATTAGTTCTAGTTTGGGGAGGGTTTTGAGGAGTCTaattatctatttttttgttcCTGCACAGGACCACAGAACAGCAGCAGCGTTTTCATGAGATCTGTGGAAACCTTGTGAAGACTCAGCGCCGTGTGCTCGGCTGGTGGAAACGTCTGTTTGCCCTGAAGGAAGAAAAGCCAAAAATGTATTTCCTCTCTGTGATCAGCAGTCTTGTGGCTGTGGCCTGGATTGGACAACAAGTTCATAACCTCTTCCTCACCTACCTGATAGTGAGTTTCCTTCTGCTGCTTCCTGGCCTCAACCAGCATGGCATCATCACCAAATATGCTGGCATGGCAAAGAGAGAAATCAACAAACTTCTTAAACAGAAGGAGAAGAAGAACGAGTAAAAGATAAAGCTCGAGTGAAAACAATTCAGAAGGCTGAAAATTCAGACAAATTTGAGTTTAATGTGGTCATCTTCCCTGCTTATCGTCAAATTTCCACAGACCAACGTAAAGCTTTTGCAGAAACTAAGCTGATAGTGATAAGTAACATCTAGAGAACAGCTTAAATGTATGCAGAGATCTCTTAAGGTTCACGTATAACTTTGTTTTTAGGTTTCAGTTTGAAGTATACATTTGTTTTCCatcaaaagtgttttattttttcaatgctGAAATACTCATTTCAGCTCTTACAGTCATGTATATTTGCATGTCATAGCACATTTAATAA
>TCONS_00051550
GTTACTTATACGTGTGAATTTAGAGAATAGAAAGTAGAAACGCCACAGATATGAACTGCGTGGTAAGATGTTAGCAAGCTAACGTTAACGCGCTGCTAACAACACGGATTACTATGAAGCATCTCGCTAACGTAAATGGCTTTCCCACACACATTTTTGGCTCAAGAGACGAGTCAGTTGGAAGAGCAACTGCAGGGATGGGGAGAGGTCATCCTGGCTGGAGATCAGATCCTGCGCTGGGAGAAGCCATGGTTCCCTGGTGCATTAGTGAGCGTTACTACAATCCTCTTCACGCTGATCTACTACCTGGACCCCTCTGTGCTCACTGGTCTGTCCTGCACTGTCATGATCCTGTGCCTGGCTGATTACCTTGTGCCCACTCTTGCTCCTCGTGTCTTTGGTTCCAACAAATGGACCACAGAACAGCAGCAGCGTTTTCATGAGATCTGTGGAAACCTTGTGAAGACTCAGCGCCGTGTGCTCGGCTGGTGGAAACGTCTGTTTGCCCTGAAGGAAGAAAAGCCAAAAATGTATTTCCTCTCTGTGATCAGCAGTCTTGTGGCTGTGGCCTGGATTGGACAACAAGTTCATAACCTCTTCCTCACCTACCTGATA

Function

symbol description
arl6ip1 Acts upstream of or within neural crest cell migration and retina morphogenesis in camera-type eye. Predicted to be located in membrane. Predicted to be part of Sec61 translocon complex. Predicted to be integral component of membrane. Is expressed in several structures, including blastodisc; central nervous system; hypochord; optic cup; and retina. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 61. Orthologous to human ARL6IP1 (ADP ribosylation factor like GTPase 6 interacting protein 1).

GO:

id name namespace
GO:0006613 cotranslational protein targeting to membrane biological_process
GO:0001755 neural crest cell migration biological_process
GO:0014032 neural crest cell development biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0005784 Sec61 translocon complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-1087 Acts upstream of or within neural crest cell migration and retina morphogenesis in camera-type eye. Predicted to be located in membrane. Predicted to be part of Sec61 translocon complex. Predicted to be integral component of membrane. Is expressed in several structures, including blastodisc; central nervous system; hypochord; optic cup; and retina. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 61. Orthologous to human ARL6IP1 (ADP ribosylation factor like GTPase 6 interacting protein 1).

Ensembl:

ensembl_id ENSDARG00000054578

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051548 False 1590 mRNA 0.42 6 31104891 31115996
TCONS_00051549 False 781 lncRNA 0.38 3 31105368 31108643
TCONS_00051550 True 615 mRNA 0.49 5 31107467 31115601

Neighbor

gene id symbol gene type direction distance location
XLOC_026450 NA coding downstream 11127 31093212 ~ 31093764 (-)
XLOC_026449 zgc:153292 coding downstream 18121 31080680 ~ 31086770 (-)
XLOC_026448 elob coding downstream 25645 31063206 ~ 31079246 (-)
XLOC_026446 NA coding downstream 46601 31041952 ~ 31058290 (-)
XLOC_026447 armc5 coding downstream 47267 31042585 ~ 31057624 (-)
XLOC_026452 smg1 coding upstream 2030 31118026 ~ 31158437 (-)
XLOC_026453 NA coding upstream 58137 31174133 ~ 31177209 (-)
XLOC_026454 syt17 coding upstream 85546 31201542 ~ 31226841 (-)
XLOC_026455 apnl coding upstream 133889 31249885 ~ 31254979 (-)
XLOC_026456 LO017965.1 coding upstream 141176 31257172 ~ 31258459 (-)
XLOC_026441 BX682556.2 non-coding downstream 304233 30800541 ~ 30800658 (-)
XLOC_026439 NA non-coding downstream 408601 30694877 ~ 30696290 (-)
XLOC_026432 NA non-coding downstream 903060 30199036 ~ 30201831 (-)
XLOC_026457 NA non-coding upstream 395474 31511470 ~ 31600282 (-)
XLOC_026460 NA non-coding upstream 534257 31650253 ~ 31650711 (-)
XLOC_026469 NA non-coding upstream 819701 31935697 ~ 31957366 (-)
XLOC_026474 NA non-coding upstream 1069903 32185899 ~ 32222085 (-)

Expression


Co-expression Network