XLOC_026454 (syt17)


Basic Information

Item Value
gene id XLOC_026454
gene name syt17
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31201542 ~ 31226841 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051553
TCtttgtgtgtgggtttgtggTGTTGTGTTCAGGGTCTTCTGTCCAGACTGTCTGATTTGCTGTTGTGCCGCTGGTCATGCCGCTCCTGTTGGCAGTGGTGTTGGGAGTGCAGCTGCTGTCAGTCTTCTGAAGAAGAGGTGGAGATTTTGGGGCCTTTTCCAGCTCAGACTCCATCATGGCTTGTCAATGACTACAATGATGAGAAAGGCACAAATTCTCACCTCGTGGATCAGGACGGCGCTTCTTCTCCCCAATCCGATCCCACTATAAACTGCAGGCCACCCACCTCAGAAGCTGCCCGATCCACCTTCAGCTTGGCAGGTCAGCTTGCAAGTCTGAATGCCCGACGCCCAAGCTCCCCCATGGTGGATGTAAAGCCAATTGAATTTTGGGCCATGGGACCCAGAAAGGAAGTAGTTCAGCCTCTGCGAAAGCCACCTACACCACCGGACGACTACTTTCGCAAGCTGGAGCCCCATCTTTACTCTTTAGACTCATGCAGTGATGATGTGGACTCTCTAACAGATGAAGAGATCCTGATGCGGTACCAGCTGGGCATGCTGCACTTCAGCACACAATACGACCTCATCAATGCCCACCTCATCGTGCGAGTCATTGAGGCCAGGGACCTTCCTCCTCCTGTAACATGCGACGGTGCCCGCCAAGACATGGCCCACTCGAACCCCTACGTGAAGATGAGCTTGCTGCCCGACAACAAGAACTCAAGGCAGACGGGAGTTAAGCGAAAAACCCAGAACCCAGTGTTTGAAGAGCGTTTCACTTTTGATCTCCCCTTCCTGGAGGCCCAAAGACGCACACTACTGCTCTCTGTGGTCGACTTTGACAAGTTTTCACGCCACTGTGTCATCGGAAAAGTGGCTCTTCCTCTTAGTGAGGTTGATCTGGTGAAGGGAGGACATTGGTGGAAGGCCCTGGTGCCCAGCTCTCAGAATGAGGTTGAGCTTGGTGAGCTGCTGCTGTCCTTAAACTATCTGCCCAGTGCTGGCAGGTTAAATGTGGACATCATCCGAGCAAAGCAGCTGCTGCAGACAGACATGTGCCAAGGCTCAGATCCATTTGTGAAGGTGCAGTTGGTGACGGGTCTGAAGCTGATGAAGTCTAAGAAGACATCCTGTATGAGAGGCACTATTGACCCCTGCTACAATGAGTCCTTTAGCTTCCGTGTACCACAAGAGGACCTGTGTGAAGTCAGTCTTGTGTTAACAGTTTACGGGCACAACGTGAAGAGTAGCAACGATTTTGTTGGCCGTATTGTGATTGGCCAGTTCTCCAGCGGGCCTCAGGAAACCACACACTGGCGTAGACTGCTGAGCTCCCAGCGAACCCCAGTGGAACAGTGGCACAGCCTGCGCTCCCGAGCTGAGTGTGACCGCGTCTCTCCTGCATCTCTTGAGGTCACATAA
>TCONS_00051554
GATCAGGACGGCGCTTCTTCTCCCCAATCCGATCCCACTATAAACTGCAGGCCACCCACCTCAGAAGCTGCCCGATCCACCTTCAGCTTGGCAGGTCAGCTTGCAAGTCTGAATGCCCGACGCCCAAGCTCCCCCATGGTGGATGTAAAGCCAATTGAATTTTGGGCCATGGGACCCAGAAAGGAAGTAGTTCAGCCTCTGCGAAAGCCACCTACACCACCGGACGACTACTTTCGCAAGCTGGAGCCCCATCTTTACTCTTTAGACTCATGCAGTGATGATGTGGACTCTCTAACAGATGAAGAGATCCTGATGCGGTACCAGCTGGGCATGCTGCACTTCAGCACACAATACGACCTCATCAATGCCCACCTCATCGTGCGAGTCATTGAGGCCAGGGACCTTCCTCCTCCTGTAACATGCGACGGTGCCCGCCAAGACATGGCCCACTCGAACCCCTACGTGAAGATGAGCTTGCTGCCCGACAACAAGAACTCAAGGCAGACGGGAGTTAAGCGAAAAACCCAGAACCCAGTGTTTGAAGAGCGTTTCACTTTTGATCTCCCCTTCCTGGAGGCCCAAAGACGCACACTACTGCTCTCTGTGGTCGACTTTGACAAGTTTTCACGCCACTGTGTCATCGGAAAAGTGGCTCTTCCTCTTAGTGAGGTTGATCTGGTGAAGGGAGGACATTGGTGGAAGGCCCTGGTGCCCAGCTCTCAGAATGAGGTTGAGCTTGGTGAGCTGCTGCTGTCCTTAAACTATCTGCCCAGTGCTGGCAGGTTAAATGTGGACATCATCCGAGCAAAGCAGCTGCTGCAGACAGACATGTGCCAAGGCTCAGATCCATTTGTGAAGGTGCAGTTGGTGACGGGTCTGAAGCTGATGAAGTCTAAGAAGACATCCTGTATGAGAGGCACTATTGACCCCTGCTACAATGAGTCCTTTAGCTTCCGTGTACCACAAGAGGACCTGTGTGAAGTCAGTCTTGTGTTAACAGGTATTGTTTTAAACATTAACACAGGAATTTttgggaaaagtcattttcgggggatacagagttga
>TCONS_00051555
AGTGTCAATGACTACAATGATGAGAAAGGCACAAATTCTCACCTCGTGGATCAGGACGGCGCTTCTTCTCCCCAATCCGATCCCACTATAAACTGCAGGCCACCCACCTCAGAAGCTGCCCGATCCACCTTCAGCTTGGCAGGTCAGCTTGCAAGTCTGAATGCCCGACGCCCAAGCTCCCCCATGGTGGATGTAAAGCCAATTGAATTTTGGGCCATGGGACCCAGAAAGGAAGTAGTTCAGCCTCTGCGAAAGCCACCTACACCACCGGACGACTACTTTCGCAAGCTGGAGCCCCATCTTTACTCTTTAGACTCATGCAGTGATGATGTGGACTCTCTAACAGATGAAGAGATCCTGATGCGGTACCAGCTGGGCATGCTGCACTTCAGCACACAATACGACCTCATCAATGCCCACCTCATCGTGCGAGTCATTGAGGCCAGGGACCTTCCTCCTCCTGTAACATGCGACGGTGCCCGCCAAGACATGGCCCACTCGAACCCCTACGTGAAGATGAGCTTGCTGCCCGACAACAAGAACTCAAGGCAGACGGGAGTTAAGCGAAAAACCCAGAACCCAGTGTTTGAAGAGCGTTTCACTTTTGATCTCCCCTTCCTGGAGGCCCAAAGACGCACACTACTGCTCTCTGTGGTCGACTTTGACAAGTTTTCACGCCACTGTGTCATCGGAAAAGTGGCTCTTCCTCTTAGTGAGGTTGATCTGGTGAAGGGAGGACATTGGTGGAAGGCCCTGGTGCCCAGCTCTCAGAATGAGGTTGAGCTTGGTGAGCTGCTGCTGTCCTTAAACTATCTGCCCAGTGCTGGCAGGTTAAATGTGGACATCATCCGAGCAAAGCAGCTGCTGCAGACAGACATGTGCCAAGGCTCAGATCCATTTGTGAAGGTGCAGTTGGTGACGGGTCTGAAGCTGATGAAGTCTAAGAAGACATCCTGTATGAGAGGCACTATTGACCCCTGCTACAATGAGTCCTTTAGCTTCCGTGTACCACAAGAGGACCTGTGTGAAGTCAGTCTTGTGTTAACAGGTATTttaattaacacattaataagcaatatacatataaatacaatataa

Function

symbol description
syt17 Predicted to act upstream of or within exocytosis. Predicted to be located in membrane. Orthologous to human SYT17 (synaptotagmin 17).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-090527-1 Predicted to act upstream of or within exocytosis. Predicted to be located in membrane. Orthologous to human SYT17 (synaptotagmin 17).

Ensembl:

ensembl_id ENSDARG00000060741

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051553 False 1425 mRNA 0.53 6 31201542 31226841
TCONS_00051554 False 1065 mRNA 0.52 5 31210282 31218226
TCONS_00051555 True 1098 mRNA 0.50 5 31212722 31218274

Neighbor

gene id symbol gene type direction distance location
XLOC_026453 NA coding downstream 24333 31174133 ~ 31177209 (-)
XLOC_026452 smg1 coding downstream 43105 31118026 ~ 31158437 (-)
XLOC_026451 arl6ip1 coding downstream 85546 31104891 ~ 31115996 (-)
XLOC_026450 NA coding downstream 107778 31093212 ~ 31093764 (-)
XLOC_026449 zgc:153292 coding downstream 114772 31080680 ~ 31086770 (-)
XLOC_026455 apnl coding upstream 23044 31249885 ~ 31254979 (-)
XLOC_026456 LO017965.1 coding upstream 30331 31257172 ~ 31258459 (-)
XLOC_026457 NA coding upstream 284629 31511470 ~ 31600282 (-)
XLOC_026458 moto coding upstream 379940 31606781 ~ 31619463 (-)
XLOC_026459 CU062431.1 coding upstream 420699 31647540 ~ 31655796 (-)
XLOC_026446 NA non-coding downstream 143252 31041952 ~ 31058290 (-)
XLOC_026441 BX682556.2 non-coding downstream 400884 30800541 ~ 30800658 (-)
XLOC_026439 NA non-coding downstream 505252 30694877 ~ 30696290 (-)
XLOC_026460 NA non-coding upstream 423412 31650253 ~ 31650711 (-)
XLOC_026469 NA non-coding upstream 708856 31935697 ~ 31957366 (-)
XLOC_026474 NA non-coding upstream 959058 32185899 ~ 32222085 (-)
XLOC_026477 NA non-coding upstream 1098293 32325134 ~ 32337695 (-)

Expression


Co-expression Network