XLOC_026457


Basic Information

Item Value
gene id XLOC_026457
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31511470 ~ 31600282 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052472
AGGAGAAGCTTGAAGTCACAGGTGGATGTCCTTATCCAGGTGAAACACCGCAGGATGCTTCTGAACTGCAGCACTGAGGGACGACTCCTGTGTCTCTTCTCCTGAAGAATGATGAATAACTCAACACCTCCACTACAGCTCAGTCCTGATCATGAATATTCACAGTCTGCCTGGCTGGGACGGCCCTCCCTGGACTGCAgcgaggagagaaagagagagagacacaaaATGAAAGAGGAATGTGCAAACACTTGAACCTGAGAGCAGATCAAGTAGGAAATGAACGCAGCACAACATGATGGAGCGAGAGGAAGATGGATGTACGGATAGCAGAAGAGATCCTTAAACATAATTTCTGTGTAAAAACTTCACCTTGGGGGGTGTTTGTCGCTGAGGCACTTCTGATCAGAAAAGGGCACTTGGAAGGACAccttctatccaagactaaaaagggcatgtgcattgtacaggttgagccctatgtgtgcacgtgcctggcgCT
>TCONS_00052473
AGGAGAAGCTTGAAGTCACAGGTGGATGTCCTTATCCAGGTGAAACACCGCAGGATGCTTCTGAACTGCAGCACTGAGGGACGACTCCTGTGTCTCTTCTCCTGAAGAATGATGAATAACTCAACACCTCCACTACAGCTCAGTCCTGATCATGAATATTCACAGTCTGCCTGGCTGGGACGGCCCTCCCTGGACTGCAgcgaggagagaaagagagagagacacaaaATGAAAGAGttCTGTCTGTGCTTAATCTCTTAGGATTCATGACAATGGTATCTTGCGGCAGTTTCACTTAGAAAgattcacatttttaaaaggtaGGTCCAACAAAAGAATAAGGGTTGGAGGTTTCTGTAATAGCACCA
>TCONS_00052474
GTTTTCTGTCTGTTTATGTTTCTTTCACGGTTCCCATGTTCACTTTGTTTCTTCAGGATGCTTCTTCACATACTGACCCTCACCAACTGATCTTTATAGAATGTGCAAACACTTGAACCTGAGAGCAGATCAAGTAGGAAATGAACGCAGCACAACATGATGGAGCGAGAGGAAGATGGATGTACGGATAGCAGAAGAGGTAAGTAGTGCAGAAATGACTAATGACGTGCCAGTCCTCCGTTGATGAGATAAACTGTGTCTAAGGCAGAGTTAGCGTGGTAAATTGGTGACAGCGAATCGAAGGTGTACTCTCTAAACACAGCGGATGTGTGAGGAGTCAACTGACTGCACGGAAACAAGAGATAAAACACATACGGCTTGAGATGGTTAAGCGGGGAGATTGAGGTAAACTGGGGCAGTTTTTACTTAAGCTATTATTATGGTAATAGTTTACTTAGCTAATAGTTTTATTTTGCTGCATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052472 False 502 lncRNA 0.49 4 31511470 31600282
TCONS_00052473 False 368 lncRNA 0.46 3 31511774 31600282
TCONS_00052474 True 482 lncRNA 0.42 2 31516690 31517317

Neighbor

gene id symbol gene type direction distance location
XLOC_026456 LO017965.1 coding downstream 253011 31257172 ~ 31258459 (-)
XLOC_026455 apnl coding downstream 256491 31249885 ~ 31254979 (-)
XLOC_026454 syt17 coding downstream 284629 31201542 ~ 31226841 (-)
XLOC_026453 NA coding downstream 334261 31174133 ~ 31177209 (-)
XLOC_026452 smg1 coding downstream 353033 31118026 ~ 31158437 (-)
XLOC_026458 moto coding upstream 6499 31606781 ~ 31619463 (-)
XLOC_026459 CU062431.1 coding upstream 47258 31647540 ~ 31655796 (-)
XLOC_026460 NA coding upstream 49971 31650253 ~ 31650711 (-)
XLOC_026461 ccdc47 coding upstream 105172 31705454 ~ 31716157 (-)
XLOC_026462 kcnh6a coding upstream 128589 31728871 ~ 31784082 (-)
XLOC_026450 NA non-coding downstream 417706 31093212 ~ 31093764 (-)
XLOC_026446 NA non-coding downstream 453180 31041952 ~ 31058290 (-)
XLOC_026441 BX682556.2 non-coding downstream 710812 30800541 ~ 30800658 (-)
XLOC_026439 NA non-coding downstream 815180 30694877 ~ 30696290 (-)
XLOC_026469 NA non-coding upstream 335415 31935697 ~ 31957366 (-)
XLOC_026474 NA non-coding upstream 585617 32185899 ~ 32222085 (-)
XLOC_026477 NA non-coding upstream 724852 32325134 ~ 32337695 (-)
XLOC_026481 NA non-coding upstream 964912 32565194 ~ 32572052 (-)

Expression


Co-expression Network