XLOC_026463 (gfap)


Basic Information

Item Value
gene id XLOC_026463
gene name gfap
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31792441 ~ 31804481 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051566
CTCATTCTCCTCCACCATGGAGTCCCAGCGTTCCTTCTCATCCTACCGAAAGAGATTCGGCACCCCGGGCGGATCACCGTCAGTGGGGGTGACCAGCCGTCACAGCACGGGCCGCCTGTCCCTCCACAGCAGCCCGCGGCACCTGACCTCCAGCCCGCTCACCCTCTCCACCTCACGGCTCTCTCTGGGTGGAGAGCGGCTAGACTTTTCAGCGGACTCCCTGTTGAAGGCCCAGTATCGTGAGACCCGCACCAATGAAAAGGTGGAGATGATGGGGCTAAACGACCGCTTCGCCAGCTACATCGAGAAGGTGCGCTTCCTGGAGCAGCAGAACAAGATGCTGGTGGCCGAGCTGAACCAGCTGAGGGGGAAAGAGCCCAGCCGTCTGGGGGACATCTATCAGGAGGAGCTGCGGGAGCTGCGCAGACAGGTGGATGGACTCAATGCTGGCAAAGCCCGGCTGGAGATTGAGAGAGACAACTTGGCCTCAGACCTCGGCACTCTCAAACAGAGACTTCAAGACGAGACTGCCCTGCGGCAAGAGGCAGAAAATAACCTCAACACCTTCAGACAAGATGTGGATGAAGCGGCTCTGAACCGCGTGCAGCTAGAGAGGAAGATTGAAGCTCTGCAAGACGAGATCAATTTCCTGAAGAAGGTCCATGAGGAGGAGATGAGGGAGCTGCACGAGCAGCTGATGGCCCAACAGGTTCATGTGGATCTGGATGTGTCTAAGCCAGACTTGACCGCTGCGCTGAAGGAGATCAGAGCTCAGTTTGAGGCCATGGCCAACTCTAACATGCAGGAGACTGAGGAGTGGTATCGCTCAAagtttgctgatctGACGGATGCAGCCAATCGTAATGGAGAGGCTCTGAGACAAGCGAAGCAGGAGGCCAATGACTATCGCCGACAGATTCAGGGCCTGACCTGTGACCTGGAATCTCTCCGTGGGTCTAATGAGTCCCTGGAGCGCCAGCTGAGAGAGATGGAGGAACGCTTCGCCATCGAGACTGCCGCGTACCAGGACACTGTGGCCCGTCTGGAGGATGAGATCCAGATGCTGAAGGAGGAGATGGCTAGACATCTGCAGGAGTACCAGGACCTGCTCAATGTCAAACTGGCCCTGGATATTGAAATCGCCACCTACAGGAAGCTGCTGGAAGGAGAGGAAAGCAGAATCACTGTTCCGGTGCAGAACTTCACCAATTTACAGTTTAGAGACACCAGCATGGACACTAAACTGACTCCTGAGGCTCATGTGAAGAGGAGCATAGTTGTGCGAACTGTTGAGACCCGTGACGGAGAGATCATTAAAGAGTCCACTACGGAGAGGAAGGATCTGCCATAATGAGGCTCAGACACTGGCTTGGCTGCAGAAGAAGATCTCCTTCACTAATGCTTCAGGAAGCTGTGTTTGTCAAACCTTGTATTTTCTCACCAACTTTCCCTGCTTCTCTCCTGGTATATATAGTTCATGGAAACTGTATTCACTGTTTTTAGCAACTACCTATATGTTTTGATCTCCTTTTCTTCCTGGGCTTCTCtttttatctgtctgtttctTCTGTGGCAGAGTCTTTGCAAGATAGTAGACTAGTTTATCGCAGAATGTGCTATAAAAAGTCATGGTTGGACAGATGAAAGTAAACAGTAGGACAAGATGTAGCTAGTGGTCAGAGCAGGTGGgaaatatagtgttttttttttttttgtcaagcatAAATTGTAGAGAACAAGTTCTTGAGCTTTATTGTAGTCTTTAAGAAtgccagaagaaaaaaagagctAGTCTGGAGCTGGTAGTATTTAAATCTGAACAGTAGGTGTTAAAGTAAGGCAGAAGGGAATTTTAACAGCAAGATGTTTGTAAGAGTTTTAAAGGAATGATGGATTTGGTCAGCGGTGCTATTTGAACATTTTACTCCACATTTTTTTGTCCTCCTCCACTGTGTGTGTGCTCAGTGTTTTTGCACAGTAGCTAACTCATCTCTTGGACCTAggttaaaatgctttaaattgcTCGTTGACACATTACTGACCTGTAGAAGACATTAAAATCTTAACATTAAGCATCTTACTGAATGAATTATGGTATAAATATCTGACACAGTGTTCCCCATCATGtgaccagatcatttgattcAGATTTATACTGATAGCTTTCAATTGTCACGCTTACATTTCCTTGGTGAAATTGAGCAATTTTTCCATTTCCATCTGTGTGATCAGGCACTTTTGCATGAGGGTGAAAGGTTCCTCCTGCAGTTTATGCTTACATTTGAGGTGTTATTCTGAATTGCACAAATATCATCTTGGTTTGAAAGTGACTTAAGTGTAAGCAGTGTTTCACACATCACTACAATGTTAATAATatgcattaataataatcaaaactgTGACCATATCTTCACTGTGAGATAACATTGCTTGATTTACACCGTTTTCAACTAAGATGGACTAACTTTCATACTGAATTGGACATTACTTCATTGTGGTGCCTTATattaatagaaattaaaaaaaagaaacatttttatatGTTAGTGTCGGTTCTGTTTGTCAACTAATATCTATGTTAAGTGTCAGCACTGCAACTGATACATTATGATAATTATGACCTAATAAAGTTTAGATTGTAGTcttttaaa

Function

symbol description
gfap Predicted to enable structural molecule activity. Located in cytoplasm and type III intermediate filament. Is expressed in several structures, including anterior neural keel; nervous system; neural tube; neuronal stem cell; and optic vesicle. Human ortholog(s) of this gene implicated in Alexander disease. Orthologous to human GFAP (glial fibrillary acidic protein).

GO:

id name namespace
GO:0045098 type III intermediate filament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
ko04630 JAK-STAT signaling pathway
ko04131 Membrane trafficking
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-990914-3 Predicted to enable structural molecule activity. Located in cytoplasm and type III intermediate filament. Is expressed in several structures, including anterior neural keel; nervous system; neural tube; neuronal stem cell; and optic vesicle. Human ortholog(s) of this gene implicated in Alexander disease. Orthologous to human GFAP (glial fibrillary acidic protein).

Ensembl:

ensembl_id ENSDARG00000025301

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051566 True 2651 mRNA 0.46 9 31792441 31804481

Neighbor

gene id symbol gene type direction distance location
XLOC_026462 kcnh6a coding downstream 8359 31728871 ~ 31784082 (-)
XLOC_026461 ccdc47 coding downstream 76284 31705454 ~ 31716157 (-)
XLOC_026459 CU062431.1 coding downstream 136645 31647540 ~ 31655796 (-)
XLOC_026460 NA coding downstream 141730 31650253 ~ 31650711 (-)
XLOC_026458 moto coding downstream 172978 31606781 ~ 31619463 (-)
XLOC_026464 map3k3 coding upstream 10703 31815184 ~ 31845816 (-)
XLOC_026465 limd2 coding upstream 46370 31850851 ~ 31875138 (-)
XLOC_026466 zp3e coding upstream 71291 31875772 ~ 32055378 (-)
XLOC_026467 ddx42 coding upstream 74961 31879442 ~ 31893008 (-)
XLOC_026468 rnf113a coding upstream 114561 31919042 ~ 31924643 (-)
XLOC_026457 NA non-coding downstream 192159 31511470 ~ 31600282 (-)
XLOC_026453 NA non-coding downstream 615232 31174133 ~ 31177209 (-)
XLOC_026450 NA non-coding downstream 698677 31093212 ~ 31093764 (-)
XLOC_026446 NA non-coding downstream 734151 31041952 ~ 31058290 (-)
XLOC_026469 NA non-coding upstream 131216 31935697 ~ 31957366 (-)
XLOC_026474 NA non-coding upstream 381418 32185899 ~ 32222085 (-)
XLOC_026477 NA non-coding upstream 520653 32325134 ~ 32337695 (-)
XLOC_026481 NA non-coding upstream 760713 32565194 ~ 32572052 (-)
XLOC_026483 NA non-coding upstream 794163 32598644 ~ 32603191 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_03365921_03371931 GFAP coding CI01000069 null 3365463 ~ 3371944 (-)
bowfin (Amia calva) AMCG00016889 LOC107570748,LOC106906011 misc CM030122.1 CM030122.1 33391789 ~ 33434651 (-)