G751250


Basic Information

Item Value
gene id G751250
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 79897071 ~ 79898215 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU852960
gtgtgtgtgtgtatgtgtgctgtgttagctcggtgtgtgtgtgtgtgtatgtgtgctgtgtTAGCTCGGTGTGCTGAGCGGCTCAAATGGCCCTTAGTAAAGCTGCAGCCTGCCGCATCCTCAGCTGGAGTGTTCTGctcccttcctgtgtgtgtgcatttgtgtgtgtgcatgcgtgcgtgtgtgtttgtgtgtaagaaagagaacgagagagatagagggaggaagggatgtgTGCAAAAATATATTGAATTTAGCCCTCTCAATCCACCTTCCAAATGTGTTGATTAGTTCATTAGAATCCACATTAGCTTTTGcacaagcagcagctactctttctggcgTAACACAGCATGACAAGGAAaaactgatacactgatagactgatagactgatacacgatagactgatagactgatacacgatagactgatagactgatacactgatacactgatagactgATACACTTATACACTGATACACTAATagactgatacactgatagactgATACACTGATACACGATAGACTGATACACAATAGACTGATACACGATAGACTGATACACTGATACACgatagactgatagactgatacACGATAGACTGATACACTGACAGAATAATAGACTGATAGCCTGatacactgatacactgatacactgatagacgaTAGACTtatacactgatacactgatagactaatagactgatacactgatacactgatagacgataaactgatacactgatacactgatacactgatacacGATagactgatacactgatagactgatacactgatacactgatacgCAATagactgatacactgatagactgATAGACAGCCACCTCGGTGACTGGGAATCTGGTCTCTCAAACCCTGCCTGATTATCTGTGCTTGGGCAGTGATAGTCTGGCttggtgtgtaagtgtgtgtgacaCTAGCTGACTGTCTGTGCATGAGTTATTAGTGCCTGAAACTCAGCCTTTAACCTTACCTTCAGTCAGTCTTGGGTGTACATTCATACTGCTTTCCTCCCCTTTTCATTATCCTTAGACAtattgactgacacacacacacacacacacacacacacacacacacacacaca
>TU852961
gtgtgtgtgtgtatgtgtgctgtgttagctcggtgtgtgtgtgtgtgtatgtgtgctgtgtTAGCTCGGTGTGCTGAGCGGCTCAAATGGCCCTTAGTAAAGCTGCAGCCTGCCGCATCCTCAGCTGGAGTGTTCTGctcccttcctgtgtgtgtgcatttgtgtgtgtgcatgcgtgcgtgtgtgtttgtgtgtaagaaagagaacgagagagatagagggaggaagggatgtgTGCAAAAATATATTGAATTTAGCCCTCTCAATCCACCTTCCAAATGTGTTGATTAGTTCATTAGAATCCACATTAGCTTTTGcacaagcagcagctactctttctggcgTAACACAGCATGACAAGGAAaaactgatacactgatagactgatagactgatacacgatagactgatagactgatacacgatagactgatagactgatacactgatacactgatagactgATACACTTATACACTGATACACTAATagactgatacactgatagatgatacactgatacactgatacactgatacacGATagactgatacactgatagactgatacactgatacactgatacgCAATagactgatacactgatagactgATAGACAGCCACCTCGGTGACTGGGAATCTGGTCTCTCAAACCCTGCCTGATTATCTGTGCTTGGGCAGTGATAGTCTGGCttggtgtgtaagtgtgtgtgacaCTAGCTGACTGTCTGTGCATGAGTTATTAGTGCCTGAAACTCAGCCTTTAACCTTACCTTCAGTCAGTCTTGGGTGTACATTCATACTGCTTTCCTCCCCTTTTCATTATCCTTAGACAtattgactgacacacacacacacacacacacacacacacacacacacacaca
>TU852962
gtgtgtgtgtgtatgtgtgctgtgttagctcggtgtgtgtgtgtgtgtatgtgtgctgtgtTAGCTCGGTGTGCTGAGCGGCTCAAATGGCCCTTAGTAAAGCTGCAGCCTGCCGCATCCTCAGCTGGAGTGTTCTGctcccttcctgtgtgtgtgcatttgtgtgtgtgcatgcgtgcgtgtgtgtttgtgtgtaagaaagagaacgagagagatagagggaggaagggatgtgTGCAAAAATATATTGAATTTAGCCCTCTCAATCCACCTTCCAAATGTGTTGATTAGTTCATTAGAATCCACATTAGCTTTTGcacaagcagcagctactctttctggcgTAACACAGCATGACAAGGAAaaactgatacactgatagactgatagactgatacacgatagactgatagactgatacacgatagactgatagactgatacactgatacactgatagactgATACAACGATAGACTGATACACTGATACACgatagactgatagactgatacACGATAGACTGATACACTGACAGAATAATAGACTGATAGCCTGATACACTGATACACAATAGACGtatacactgatacactgatacactgatagacgaTAGACTtatacactgatacactgatagactaatagactgatacactgatacactgatagacgataaactgatacactgatacactgatacactgatacacGATagactgatacactgatagactgatacactgatacactgatacgCAATagactgatacactgatagactgATAGACAGCCACCTCGGTGACTGGGAATCTGGTCTCTCAAACCCTGCCTGATTATCTGTGCTTGGGCAGTGATAGTCTGGCttggtgtgtaagtgtgtgtgacaCTAGCTGACTGTCTGTGCATGAGTTATTAGTGCCTGAAACTCAGCCTTTAACCTTACCTTCAGTCAGTCTTGGGTGTACATTCATACTGCTTTCCTCCCCTTTTCATTATCCTTAGACAtattgactgacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU852960 False 1122 lncRNA 0.43 2 79897071 79898215
TU852961 False 888 lncRNA 0.44 2 79897071 79898215
TU852962 True 1060 lncRNA 0.43 2 79897071 79898215

Neighbor

gene id symbol gene type direction distance location
LOC110530686 LOC106569672 coding upstream 183522 79689267 ~ 79713549 (+)
LOC110530727 LOC106569674 coding upstream 301052 79587340 ~ 79596019 (+)
LOC110530726 LOC106600567 coding upstream 318061 79548127 ~ 79579010 (+)
LOC110530721 LOC106600560 coding upstream 389062 79387596 ~ 79508009 (+)
ncana LOC106569686 coding upstream 549617 79210727 ~ 79347454 (+)
LOC110530734 LOC106569665 coding downstream 135409 80033624 ~ 80036953 (+)
LOC110530735 LOC106569664 coding downstream 173348 80071563 ~ 80074536 (+)
acsm3 acsm3 coding downstream 414310 80312525 ~ 80327493 (+)
map6d1 LOC106569659 coding downstream 430316 80328531 ~ 80339721 (+)
LOC110530801 LOC106600593 coding downstream 1000020 80898235 ~ 80924566 (+)
G751247 NA non-coding upstream 5537 79879941 ~ 79891534 (+)
G751228 NA non-coding upstream 42209 79853848 ~ 79854862 (+)
G751202 NA non-coding upstream 86580 79808455 ~ 79810491 (+)
G751197 NA non-coding upstream 95651 79797978 ~ 79801420 (+)
G751165 NA non-coding upstream 173426 79723139 ~ 79723645 (+)
G751291 NA non-coding downstream 55183 79953398 ~ 79956217 (+)
G751316 NA non-coding downstream 115937 80014152 ~ 80015061 (+)
G751875 NA non-coding downstream 131296 80029511 ~ 80029912 (+)
G751877 NA non-coding downstream 144268 80042483 ~ 80042752 (+)
G751886 NA non-coding downstream 154677 80052892 ~ 80053112 (+)
G750935 NA other upstream 699693 79195270 ~ 79197378 (+)
G750854 NA other upstream 917090 78979230 ~ 78979981 (+)
G750533 LOC106569543 other upstream 1099523 78797142 ~ 78797548 (+)
G752357 NA other downstream 733095 80631310 ~ 80634052 (+)
G752398 NA other downstream 843389 80741604 ~ 80741945 (+)
G753205 LOC106569572 other downstream 1588605 81486820 ~ 81487610 (+)
sdhc LOC106569582 other downstream 1885134 81783282 ~ 81802285 (+)
G753337 NA other downstream 2023947 81922162 ~ 81931491 (+)

Expression


Co-expression Network