XLOC_026468 (rnf113a)


Basic Information

Item Value
gene id XLOC_026468
gene name rnf113a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31919042 ~ 31924643 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051574
AAGAGGCGCTGTAACCAAAAAATGACTTCATCGTTTGTTTTTATACGTAGTTAAAGATGGCGGAGTCCGAGGAGCCGAAAAAACCCACctgcacatttatttttaagaaatcaaaCAAGAAATTTTCCGCACGGAAAAGAAATGCAAGTGACAGCGACAAAGAAAAAAGCAGCGGCGATGAGGGCAGTGCAGTGGTCAGAAAGAAGAAATCTGCCGCTGTGAACCCCATGATTCAGAAAACGAAGAAAGTGGAGAGGGAAGCTGTCTCATCGAGTGAAAGTGAAGAAGAGAAGGAAGAAAAGAGCGTGACTGTCGCTTACAAGTCCACTCGCTCAGCGAAACCAGAGGGGCCGGATGACATGGGGGCCACTGCTGTCTATGAGCTGGACACAGAGAGGGACAAAGATGCTCAGGCCATCTTTGAGCGCAGTCAGAAAATCCAAGAGGAGCTGACTGGTAAAGAAGATGATAAGATTTATCGTGGGATCAACAACTATCACAAATTCATTAAACCCAAAGATTCCACTATGGGCAATGCCTCCTCTGGCATGGTCAGGAAAGGCCCAATTAGAGCGCCTGAGCACCTCAGGGCCACAGTGCGGTGGGATTACCAGCCTGACATTTGTAAAGATTACAAAGAGACTGGTTTCTGTGGGTTTGGAGACAGCTGTAAGTTTTTGCATGACCGCTCGGACTACAAGCACGGCTGGCAGATTGAACGAGAGCTTGAAGAAGGAAGATATGGAGCAAACGATGATGAGAATTACGAAGTGAGCAGTGATGATGAAGATCTTCCCTTCAAGTGTTTCATTTGTAGAGAGTCTTTTAAGAACCCCATTATAACAAAGTGCCGGCACTATTTTTGTGAAGCCTGTGCCCTGCAGCACTACCGCAAGTCTAAGCGCTGCTACGTTTGTAACCAGCAGACCAATGGAGTCTTCAATCCTGCCAAAGAGCTGATGGCTAAAATGCTGAAACGGCAGGCAGCAGATGATCAGCCTCCTTCAGAAGAAGAAGACTAGCACCACACAGCCTCCCCTTCTCTTTTCTACTTTAATCACTCACATTCAGAGTTgtacattttcaaagtatttgaAATAAACGTGTCTTTTGTAGA
>TCONS_00051575
TGGCGGAGTCCGAGGAGCCGAAAAAACCCACctgcacatttatttttaagaaatcaaaCAAGAAATTTTCCGCACGGAAAAGAAATGCAAGTGACAGCGACAAAGAAAAAAGCAGCGGCGATGAGGGCAGTGCAGTGGTCAGAAAGAAGAAATCTGCCGCTGTGAACCCCATGATTCAGAAAACGAAGAAAGTGGAGAGGGAAGCTGTCTCATCGAGTGAAAGTGAAGAAGAGAAGGAAGAAAAGAGCGTGACTGTCGCTTACAAGTCCACTCGCTCAGCGAAACCAGAGGGGCCGGATGACATGGGGGCCACTGCTGTCTATGAGCTGGACACAGAGAGGGACAAAGATGCTCAGGCCATCTTTGAGCGCAGTCAGAAAATCCAAGAGGAGCTGACTGGTAAAGAAGATGATAAGATTTATCGTGGGATCAACAACTATCACAAATTCATTAAACCCAAAGATTCCACTATGGGCAATGCCTCCTCTGGCATGGTCAGGTGAGTCAGTGTTGTTACGAGTTTTTCTTTCTCTTGTTTCCTCTCCCTCTTTCCTGCACTCTCTCGGTCTGAATTATTTCCAGGTGCAGCGGATTACGGCAGATTGTGATTGGTGCTTGGATTGGCGGCTGTATTTAAGAGGCCTTTGTttatcttctgaacacaaatgaaaatgttttagattaaatctgacaTCTCTCTCATCCTCCATGGACAGTGAGATTTCAAAGATGTTCAAAAGTCCAGAAACCAAAAACATTGCATGGGACTTTAGTGTTCTGATGTGTAATCATGTAGAGCTCCCAAAACacttgtaaaaaactgtaaatacatgaaa

Function

symbol description
rnf113a Predicted to enable metal ion binding activity. Predicted to be involved in snoRNA splicing. Predicted to be part of U2-type spliceosomal complex. Human ortholog(s) of this gene implicated in nonphotosensitive trichothiodystrophy 5. Orthologous to several human genes including RNF113A (ring finger protein 113A).

GO:

id name namespace
GO:0034247 snoRNA splicing biological_process
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040825-1 Predicted to enable metal ion binding activity. Predicted to be involved in snoRNA splicing. Predicted to be part of U2-type spliceosomal complex. Human ortholog(s) of this gene implicated in nonphotosensitive trichothiodystrophy 5. Orthologous to several human genes including RNF113A (ring finger protein 113A).

Ensembl:

ensembl_id ENSDARG00000037930

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051574 False 1117 mRNA 0.46 10 31919042 31924643
TCONS_00051575 True 836 lncRNA 0.44 5 31922493 31924586

Neighbor

gene id symbol gene type direction distance location
XLOC_026467 ddx42 coding downstream 26034 31879442 ~ 31893008 (-)
XLOC_026465 limd2 coding downstream 43904 31850851 ~ 31875138 (-)
XLOC_026464 map3k3 coding downstream 73226 31815184 ~ 31845816 (-)
XLOC_026463 gfap coding downstream 114561 31792441 ~ 31804481 (-)
XLOC_026462 kcnh6a coding downstream 134960 31728871 ~ 31784082 (-)
XLOC_026469 NA coding upstream 11054 31935697 ~ 31957366 (-)
XLOC_026470 BX511080.1 coding upstream 142340 32066983 ~ 32071468 (-)
XLOC_026471 baxb coding upstream 150163 32074806 ~ 32079916 (-)
XLOC_026472 tnnt1 coding upstream 232497 32157140 ~ 32170878 (-)
XLOC_026473 pih1d1 coding upstream 247891 32172534 ~ 32180833 (-)
XLOC_026460 NA non-coding downstream 268331 31650253 ~ 31650711 (-)
XLOC_026457 NA non-coding downstream 318760 31511470 ~ 31600282 (-)
XLOC_026453 NA non-coding downstream 741833 31174133 ~ 31177209 (-)
XLOC_026450 NA non-coding downstream 825278 31093212 ~ 31093764 (-)
XLOC_026446 NA non-coding downstream 860752 31041952 ~ 31058290 (-)
XLOC_026474 NA non-coding upstream 261256 32185899 ~ 32222085 (-)
XLOC_026477 NA non-coding upstream 400491 32325134 ~ 32337695 (-)
XLOC_026481 NA non-coding upstream 640551 32565194 ~ 32572052 (-)
XLOC_026483 NA non-coding upstream 674001 32598644 ~ 32603191 (-)

Expression


Co-expression Network