XLOC_026469


Basic Information

Item Value
gene id XLOC_026469
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31935697 ~ 31957366 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053056
GTCCGTTGGGATGGGGGTTGGTTGTAAGGACAGATACGCCTATAAAAGATAACAGCACTATGCCGACAGAGCGAGAAGAGAACAGGTTACAGCCACAGAGAGGAAAGTGAGGGAATGACTGCAGTAAAGTGAAGCTTCTTTGGATTTTTCTACTTGCTATCCCACTGCAGTTGAAGCTCAGCGGTGCTCAAAGGCCACCTAGAGGACTCACTGAGAAACTGCACAACACAAAATACTGCAGTACCCCCTCCTCTATAAGCTTTCTCCCCGACTGAGACGCCAACACGCCAATAATGTCAGCCACGTGGAGAGAAGGACACCTGATGGATATGTGAAAACTGATTTAGTGTGACAAGACTACGTAATTGTAAAAGAATGTGTTTGACTCTTGTGAATGAGAAGTGAACAGACTGGGCTCTTGCTACTGGAACCCATTATCACAAGTCAAGGAGTGAGACAATAAAGCTGAAGTGAGATGCCATCTCAAAGAGGCAGGAAAGTGAGTCATTCAGGAGGAGGAACAGTGGAATGCAGTTCTGCCTGAGAGAAGAAATAAATACTCATGTGGAGGAGGAAAAGGACAGTGCAGTCTTATGTGATACGCATTTCAAACCTCAACTGTATACCTAGTTACATATATCCAATTAGTGTTCTGTGAAATCAATACAAGAAAA
>TCONS_00053057
aaaaatcaaatagtgTTAGCATggcaaaaaaacaagcaaatactGAAAACAAAGTAATATTCTGAAGGAACACATCAGCATTTGGAAATAATGTTAATTTAGCTTGCATTACAGATTGATCCTAGATTAGAATATTCATCTTGACTTTTGTAAACAATCATTTCTGCCATCAAATAACCAGAGGACATAAAAGGTCATAGAGCCCAGACTATTGGCCATTCCTTtaacattttatcatttttttaagtcttaaaaacaGTTTCTCAACCACGTCTCTGCACAATTTCCATGTCTCCCTCACCAAGTACACCTGCTTCAGATCATCagtagagactgaaagacctgtaatgggtttgactgacaaaggagacatttaaaacatgcagtgttggtggtcgcCCAGGAACGTGGTTGACAAACACTGCTCTAATAGATTAATCCACCTTTATTAGCATAAAAAAACATCTTTGTTTTCACCTTTCCGACAAGTATTATTGATATTACACCCATATATGGTCTTAAGTcagtctctctctccctctctggcACCCTCCCAGAGACTGAGCTGGGGGAGGAGAGCGAGATGTCGCAAGTGCAAGTTTGATTCGTGAGGACAAGAAGTGTAGTGTTTAAGTGCGCACTACTGTGAAATCCTCATGGGTTGTCTAGGTGTGCAGCCAACTGCCTGTTCAGCGATATTTCTGGCTCTCCCAGGCCTTccctctttacttttttttttcctgaacccATTTCTGTTAAGTTCCACAGGAGAAAGAACATAGTACAGGTTAAGAAAAACATGagcacagaatttttttttttataaatcaaacctttataataataatgcttattcaaatattaattaaaatatttggttattttggttattatctaattaatatttgaatattttggtTATTCAAATACTAATCAGAATTTAAAAGGTTAAATTAGGCTGTGACAAAAACAGTATGAAACAAAGTGCTGagtaaactatctctttagggCAAAAGAATATATACAGAGAGAGAAATATACCCAGAAAAAGGCACATGTTCcagatcaataaatcaataatgtTTCCACCAATC
>TCONS_00053058
GTTGGGATGGGGGTTGGTTGTAAGGACAGATACGCCTATAAAAGATAACAGCACTATGCCGACAGAGCGAGAAGAGAACAGGTTACAGCCACAGAGAGGAAAGTGAGGGAATGACTGCAGTAAAGTGAAGCTTCTTTGGATTTTTCTACTTGCTATCCCACTGCAGTTGAAGCTCAGCGGTGCTCAAAGGCCACCTAGAGGACTCACTGAGAAACTGCACAACACAAAATACTGCAGTACCCCCTCCTCTATAAGCTTTCTCCCCGACTGAGGTTTGATTCGTGAGGACAAGAAGTGTAGTGTTTAAGTGCGCACTACTGTGAAATCCTCATGGGTTGTCTAGGTGTGCAGCCAACTGCCTGTTCAGCGATATTTCTGGCTCTCCCAGGCCTTccctctttacttttttttttcctgaacccATTTCTGTTAAGTTCCACAGGAGAAAGAACATAGTACAGGTTAAGAAAAACATGagcacagaatttttttttttataaatcaaacctttataataataatgcttattcaaatattaattaaaatatttggttattttggttattatctaattaatatttgaatattttggtTATTCAAATACTAATCAGAATTTAAAAGGTTAAATTAGGCTGTGACAAAAACAGTATGAAACAAAGTGCTGagtaaactatctctttagggCAAAAGAATATATACAGAGAGAGAAATATACCCAGAAAAAGGCACATGTTCcagatcaataaatcaataatgtTTCCACCAATC

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0003008 system process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053056 False 674 lncRNA 0.44 3 31935697 31957366
TCONS_00053057 False 1094 lncRNA 0.35 2 31951309 31952513
TCONS_00053058 True 768 lncRNA 0.38 3 31951309 31957362

Neighbor

gene id symbol gene type direction distance location
XLOC_026468 rnf113a coding downstream 11054 31919042 ~ 31924643 (-)
XLOC_026467 ddx42 coding downstream 42689 31879442 ~ 31893008 (-)
XLOC_026465 limd2 coding downstream 60559 31850851 ~ 31875138 (-)
XLOC_026464 map3k3 coding downstream 89881 31815184 ~ 31845816 (-)
XLOC_026463 gfap coding downstream 131216 31792441 ~ 31804481 (-)
XLOC_026470 BX511080.1 coding upstream 109617 32066983 ~ 32071468 (-)
XLOC_026471 baxb coding upstream 117440 32074806 ~ 32079916 (-)
XLOC_026472 tnnt1 coding upstream 199774 32157140 ~ 32170878 (-)
XLOC_026473 pih1d1 coding upstream 215168 32172534 ~ 32180833 (-)
XLOC_026474 NA coding upstream 228533 32185899 ~ 32222085 (-)
XLOC_026460 NA non-coding downstream 284986 31650253 ~ 31650711 (-)
XLOC_026457 NA non-coding downstream 335415 31511470 ~ 31600282 (-)
XLOC_026453 NA non-coding downstream 758488 31174133 ~ 31177209 (-)
XLOC_026450 NA non-coding downstream 841933 31093212 ~ 31093764 (-)
XLOC_026446 NA non-coding downstream 877407 31041952 ~ 31058290 (-)
XLOC_026477 NA non-coding upstream 367768 32325134 ~ 32337695 (-)
XLOC_026481 NA non-coding upstream 607828 32565194 ~ 32572052 (-)
XLOC_026483 NA non-coding upstream 641278 32598644 ~ 32603191 (-)
XLOC_026499 NA non-coding upstream 1342828 33300194 ~ 33304123 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_03506556_03507031 NA coding CI01000069 null 3506255 ~ 3507557 (-)