XLOC_026472 (tnnt1)



Basic Information


Item Value
gene id XLOC_026472
gene name tnnt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32157140 ~ 32170878 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00051578
CACGTCTCATCTTTTTACAGAGTGAATTATCCTACCATCAGCGGAAGcttaatcatGTCTGATGTAGAAGAGGAATATGAGTGAGTACCctgaagaagaggaggaggagactACAGAGGAAGCTGGAACAGAACAGCAGGATTATACAGAATATCAGgAGGAGGCTCAGGAAGAAGAGGAGGAAAGACCGAGGCCCAAGCCCATGGTTCCACAACTTGCCCCTCCAAAGATTCCAGAGGGTGAGAGGGTAGATTTTGATGATATTCATCGTAAAAGAATGGAGAAGGACCTTCTGGAGTTACAAACTTTGATTGAGGCCCACTTTGAGCAGAGGAAAAAGGAGGAGGAAGAACTGATTGGTCTAAAGGATAGAATTGAGCGGCGGCGGTTTGAACGAGCAGAGCAGCAGCGTGTTAGagcagagaaagaaagagacagacagacaagaatTGCGGAGGAGCGCCAGAGGAAAGAGGATGAGGAGGCTAAGAAGAGGGCAGATGATGAGGCCAAGAAGAAGAAGGTTTTATCCAATATGGGGGCAAATTTTGGTGGCTTCTTAGCCAAAgCAGAGCAGAAAAGAGGGAAACGTTTGACTGGTCGAGAGATCAAGAGAAAGACTCTTTCAGAGAGGCGTGCTCCCCTTGGCATCGAAAATATGCGTGAGGATGCGTTGAGGCAGCGAGCTCAGGAAATGTGGAACTGGATTTATGAGCTGGAGTCTGAGAAATTTGACCTCTTGGATCAAATGAAGAAACAGAAGTATGAGATTGTTGTTTTGCTGAACAGGATTTCTCACGCTCAAAAGTTCAAAAAAGGTCATGGTAAAGGAAAAGTCGGAGGCCGCTGGAAATAAGAAACTGGAAAAATAAGGAAAGAAAACATGAATGCATTTACTTAGTCTCTCAGAGATGTGAAATGGTCAGAAATGCATTTCAGATCCATTTCAGACCTAATGTACTTGGATTAATATCTTTGgcttgtattattttaatttgttagatATTTGAATAAAGTCTttgcaaaacaaataaatgtaaatgacaaactgca
>TCONS_00051579
ATCCTACCATCAGCGGAAGcttaatcatGTCTGATGTAGAAGAGGAATATGAGGAACAAGCAGAGGctgaagaagaggaggaggagactACAGAGGAAGCTGGAACAGAACAGCAGGATTATACAGAATATCAGgAGGAGGCTCAGGAAGAAGAGGAGGAAAGACCGAGGCCCAAGCCCATGGTTCCACAACTTGCCCCTCCAAAGATTCCAGAGGGTGAGAGGGTAGATTTTGATGATATTCATCGTAAAAGAATGGAGAAGGACCTTCTGGAGTTACAAACTTTGATTGAGGCCCACTTTGAGCAGAGGAAAAAGGAGGAGGAAGAACTGATTGGTCTAAAGGATAGAATTGAGCGGCGGCGGTTTGAACGAGCAGAGCAGCAGCGTGTTAGagcagagaaagaaagagacagacagacaagaatTGCGGAGGAGCGCCAGAGGAAAGAGGATGAGGAGGCTAAGAAGAGGGCAGATGATGAGGCCAAGAAGAAGAAGGTTTTATCCAATATGGGGGCAAATTTTGGTGGCTTCTTAGCCAAAgCAGAGCAGAAAAGAGGGAAACGTTTGACTGGTCGAGAGATCAAGAGAAAGACTCTTTCAGAGAGGCGTGCTCCCCTTGGCATCGAAAATATGCGTGAGGATGCGTTGAGGCAGCGAGCTCAGGAAATGTGGAACTGGATTTATGAGCTGGAGTCTGAGAAATTTGACCTCTTGGATCAAATGAAGAAACAGAAGTATGAGATTGTTGTTTTGCTGAACAGGATTTCTCACGCTCAAAAGTTCAAAAAAGGTCATGGTAAAGGAAAAGTCGGAGGCCGCTGGAAATAAGAAACTGGAAAAATAAGGAAAGAAAACATGAATGCATTTACTTAGTCTCTCAGAGATGTGAAATGGTCAGAAATGCA
>TCONS_00051580
ATGCCCTGTCTTAGTCTCTGCATTCCCACCTGTTCTCACCCCATCAGTCTTCATGTGAAGCATCCAATGGGCTGTCAGCACTTTGGAACAATGGAACAATTTGGTTCTTGTGCTGTTGTGTTTtgtctctctctatttctctcatTGGTTTTTAAAGCCATTACAATAAACTTGTTGTCTTATTCCTTCTTTCTGTATCTccttttttccttcagcttaatcatGTCTGATGTAGAAGAGGAATATGAGGAACAAGCAGAGGctgaagaagaggaggaggagactACAGAGGAAGCTGGAACAGAACAGCAGGATTATACAGAATATCAGgAGGAGGCTCAGGAAGAAGAGGAGGAAAGACCGAGGCCCAAGCCCATGGTTCCACAACTTGCCCCTCCAAAGATTCCAGAGGGTGAGAGGGTAGATTTTGATGATATTCATCGTAAAAGAATGGAGAAGGACCTTCTGGAGTTACAAACTTTGATTGAGGCCCACTTTGAGCAGAGGAAAAAGGAGGAGGAAGAACTGATTGGTCTAAAGGATAGAATTGAGCGGCGGCGGTTTGAACGAGCAGAGCAGCAGCGTGTTAGagcagagaaagaaagagacagacagacaagaatTGCGGAGGAGCGCCAGAGGAAAGAGGATGAGGAGGCTAAGAAGAGGGCAGATGATGAGGCCAAGAAGAAGAAGGTTTTATCCAATATGGGGGCAAATTTTGGTGGCTTCTTAGCCAAAgCAGAGCAGAAAAGAGGGAAACGTTTGACTGGTCGAGAGATCAAGAGAAAGACTCTTTCAGAGAGGCGTGCTCCCCTTGGCATCGAAAATATGCGTGAGGATGCGTTGAGGCAGCGAGCTCAGGAAATGTGGAACTGGATTTATGAGCTGGAGTCTGAGAAATTTGACCTCTTGGATCAAATGAAGAAACAGAAGTATGAGATTGTTGTTTTGCTGAACAGGATTTCTCACGCTCAAAAGTTCAAAAAAGGTCATGGTAAAGGAAAAGTCGGAGGCCGCTGGAAATAA

Function


symbol description
tnnt1 Predicted to enable tropomyosin binding activity and troponin T binding activity. Predicted to be involved in sarcomere organization and slow-twitch skeletal muscle fiber contraction. Predicted to act upstream of or within regulation of muscle contraction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of troponin complex. Is expressed in muscle and slow muscle cell. Human ortholog(s) of this gene implicated in nemaline myopathy 5. Orthologous to human TNNT1 (troponin T1, slow skeletal type).

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0045214 sarcomere organization biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0005861 troponin complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005523 tropomyosin binding molecular_function
GO:0031014 troponin T binding molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-080723-27 Predicted to enable tropomyosin binding activity and troponin T binding activity. Predicted to be involved in sarcomere organization and slow-twitch skeletal muscle fiber contraction. Predicted to act upstream of or within regulation of muscle contraction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of troponin complex. Is expressed in muscle and slow muscle cell. Human ortholog(s) of this gene implicated in nemaline myopathy 5. Orthologous to human TNNT1 (troponin T1, slow skeletal type).

Ensembl:

ensembl_id ENSDARG00000037954

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00051578 False 1053 mRNA 0.43 14 32157140 32170878
TCONS_00051579 False 910 mRNA 0.45 15 32157260 32170850
TCONS_00051580 True 1029 mRNA 0.45 14 32157337 32169754

Neighbor


gene id symbol gene type direction distance location
XLOC_026471 baxb coding downstream 77224 32074806 ~ 32079916 (-)
XLOC_026470 BX511080.1 coding downstream 85672 32066983 ~ 32071468 (-)
XLOC_026466 zp3e coding downstream 101762 31875772 ~ 32055378 (-)
XLOC_026473 pih1d1 coding upstream 1656 32172534 ~ 32180833 (-)
XLOC_026474 NA coding upstream 15021 32185899 ~ 32222085 (-)
XLOC_026475 cpt1cb coding upstream 58023 32228901 ~ 32290096 (-)
XLOC_026476 si:dkey-16p21.7 coding upstream 123867 32294745 ~ 32320543 (-)
XLOC_026477 NA coding upstream 154256 32325134 ~ 32337695 (-)
XLOC_026469 NA non-coding downstream 199774 31935697 ~ 31957366 (-)
XLOC_026460 NA non-coding downstream 506429 31650253 ~ 31650711 (-)
XLOC_026457 NA non-coding downstream 556858 31511470 ~ 31600282 (-)
XLOC_026453 NA non-coding downstream 979931 31174133 ~ 31177209 (-)
XLOC_026450 NA non-coding downstream 1063376 31093212 ~ 31093764 (-)
XLOC_026481 NA non-coding upstream 394316 32565194 ~ 32572052 (-)
XLOC_026483 NA non-coding upstream 427766 32598644 ~ 32603191 (-)
XLOC_026499 NA non-coding upstream 1129316 33300194 ~ 33304123 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_03667639_03669979 NA coding CI01000069 null 3667620 ~ 3669979 (-)