XLOC_026473 (pih1d1)



Basic Information


Item Value
gene id XLOC_026473
gene name pih1d1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32172534 ~ 32180833 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00051581
ttcattttactgCATGTCTGAGGCACTCATCATGGACACGGACGCGTCTCTCCTCCTCGGTGTTGAACACGAGCAGAAACAACAAGAAGAGCTTTACCAACAACTTCTGCTTCAGACCATGGGCAAATTGCAGAGCGACAGTCCCCCTTCCAAAGTCATCCGTCCACAGCCtgGTCTGTGCGTGAAGACCTCCTCAGTGTCAGACAAAAAGAAGGTCTTTCTAAACATCTGCCAGTCACAGACGGTACCGCCACCTCCTCACTTGTCCCAGGAAGCACTGGTGGAACTACTGGAGTCAGAGGACCCGACGAGTTACAGAGTGCCCATGAGCCTCGGCGAACCACACACAGAAGTTGACAACAGTAGGCGGGTTTCCTTTACAAACTAGCACAAAACTTTATTTGCCAAACGTCAATAAAACATCATTGCAAAATGGAAGCTTACATGTTAACTCACAGTTTTATGGGACTAAAGCTTCAAATTCTAAAAGTCTTGGCAACAGATATACGGTAAGTAGTATTAGTTAAATTAGAGCCAATGCACAAGCCATTATTTTTAATAGAACTGGGTATGCATCATGTGTGTCAAACAAGCATTAATGGCACGGAAAGCCCTCTGTAGTTCAGAGCAGCCatgaatttgtttttttctgggaaattctattgtaatatttttgtgttttaatgaaaaaatacttaatgcgaacataaaacattttataaatgcgCCTGTTTACAAAAGTGACACATTTccatttcattttgtattttcagTTTacgccaggggtgtccaaactcggtcctggaggatcacctgggccggtgtcctgcatattttagttccaacctcaaataaacacacctgaaccaggcaatcaagctctttctaggtatactagaaacttccaaggAGGTGTCTTGAAGGAAgctggagctaaaatttgcaggacactaTGCAGGCCTGGTTTACACAGTTTAAATGCAGCTAATgagattatattttttaattcactctATTTTCCTTTTATCAGTGTCTCCTGTATCCATTCCAAAGTATGTTGCTGGAAGTGTGATAAGCCTGATATAAATAACCAAAACCAGAACTCGTGCTGATGGACTTATGTGACAGTAAAGTAGATTAGCaatcaaaatatttctttttgcCAGGCTCACAAGGCTGTACTGTGTATGATGTGGTGATCAATGATGAATTCTTTCAGAAATGTGAGAAAGATACCCTCTTCCAGCAGTTTCTTATTGCGGTTTCGTTGGAAGGCTTGGAAAACAAATACAGCCTGGAGTTAAGCAGAGatATAAAAATTTTGAAGAACAGGAAGTTCATGGGATCCATAGCAGAACAAAACATTCGTACCAAGAGCAAGCCAATTATCCAGGAAATTGACTCAAAGGAATCTCTCACACTGCCTTCAGCGGCTAAATGTCCAGAGTTCACTTTACTGGTGGAGCCACCAAGTGGAAAAGCAGAGCACCTGATCGCTGAGATCCTTCTTCCTGGAGTGTCATCTGCTCGATCTGTTGTTCTGGATTTGGGAGAAGACAGACTAGTGCTGATTGCCCGACCATCTCTTTTCCACTTGGATATTTTCTTTCCCGTGCTTATTGACCAAGAAAACAGTGTTGCCcaatacaacacaaacacacagacgcTTACGGTGACCATGCCAGTCGTGTCTTTGTGAAAACTACCGGAAGTCTATGATTTCACAAAAAACTGTTATTCTTTTATTCACTTGTTTACAGTGTAatcaacaacaactacagtataaaacatacttttttttacatGTGTGAAATTGGTTTCCGTTTTTGTGCCCTACAGAACACTATTGATGGAATTATTAGACAACATCGCTCATTAAACCATTATGTCAAAGTTTATGTTTGATTAATTTCTAGAAATCCATTCTGTGCTCTGGCCATAGATAACACTGTCTTTGCCAGTTACCACTAGTTGCCACATTGTCCTAGCCAAatgcacgcatacacacatgcaaaaggtttgtaaaataaaaaaaggaatgtgAATAAAACCACATtcggggaaataaaaaaaataatgaaatttaaa
>TCONS_00051582
CGCTGAACCGGAACAGTCAgtgaaaacatttcattttactgCATGTCTGAGGCACTCATCATGGACACGGACGCGTCTCTCCTCCTCGGTGTTGAACACGAGCAGAAACAACAAGAAGAGCTTTACCAACAACTTCTGCTTCAGACCATGGGCAAATTGCAGAGCGACAGTCCCCCTTCCAAAGTCATCCGTCCACAGCCtgGTCTGTGCGTGAAGACCTCCTCAGTGTCAGACAAAAAGAAGGTCTTTCTAAACATCTGCCAGTCACAGACGGTACCGCCACCTCCTCACTTGTCCCAGGAAGCACTGGTGGAACTACTGGAGTCAGAGGACCCGACGAGTTACAGAGTGCCCATGAGCCTCGGCGAACCACACACAGAAGTTGACAACAGCTCACAAGGCTGTACTGTGTATGATGTGGTGATCAATGATGAATTCTTTCAGAAATGTGAGAAAGATACCCTCTTCCAGCAGTTTCTTATTGCGGTTTCGTTGGAAGGCTTGGAAAACAAATACAGCCTGGAGTTAAGCAGAGatATAAAAATTTTGAAGAACAGGAAGTTCATGGGATCCATAGCAGAACAAAACATTCGTACCAAGAGCAAGCCAATTATCCAGGAAATTGACTCAAAGGAATCTCTCACACTGCCTTCAGCGGCTAAATGTCCAGAGTTCACTTTACTGGTGGAGCCACCAAGTGGAAAAGCAGAGCACCTGATCGCTGAGATCCTTCTTCCTGGAGTGTCATCTGCTCGATCTGTTGTTCTGGATTTGGGAGAAGACAGACTAGTGCTGATTGCCCGACCATCTCTTTTCCACTTGGATATTTTCTTTCCCGTGCTTATTGACCAAGAAAACAGTGTTGCCcaatacaacacaaacacacagacgcTTACGGTGACCATGCCAGTCGTGTCTTTGTGAAAACTACCGGAAGTCTATGATTTCACAAAAAACTGTTATTCTTTTATTCACTTGTTTACAGTGTAatcaacaacaactacagtataaaacatacttttttttacatGTGTGAAATTGGTTTCCGTTTTTGTGCCCTACAGAACACTATTGATGGAATTATTAGACAACATCGCTCATTAAACCATTATGTCAAA
>TCONS_00051583
AgtgaaaacatttcattttactgCATGTCTGAGGCACTCATCATGGACACGGACGCGTCTCTCCTCCTCGGTGTTGAACACGAGCAGAAACAACAAGAAGAGCTTTACCAACAACTTCTGCTTCAGACCATGGGCAAATTGCAGAGCGACAGTCCCCCTTCCAAAGTCATCCGTCCACAGCCtgGTCTGTGCGTGAAGACCTCCTCAGTGTCAGACAAAAAGAAGGTCTTTCTAAACATCTGCCAGTCACAGACGGTACCGCCACCTCCTCACTTGTCCCAGGAAGCACTGGTGGAACTACTGGAGTCAGAGGACCCGACGAGTTACAGAGTGCCCATGAGCCTCGGCGAACCACACACAGAAGTTGACAACAGTAGGCGGGTTTCCTTTACAAACTAGCACAAAACTTTATTTGCCAAACGTCAATAAAACATCATTGCAAAATGGAAGCTTACATGTTAACTCACAGTTTTATGGGACTAAAGCTTCAAATTCTAAAAGTCTTGGCAACAGATATACGGTAAGTAGTATTAGTTAAATTAGAGCCAATGCACAAGCCATTATTTTTAATAGAACTGGGTATGCATCATGTGTGTCAAACAAGCATTAATGGCACGGAAAGCCCTCTGTAGTTCAGAGCAGCCatgaatttgtttttttctgggaaattctattgtaatatttttgtgttttaatgaaaaaatacttaatgcgaacataaaacattttataaatgcgCCTGTTTACAAAAGTGACACATTTccatttcattttgtatttt
>TCONS_00051584
actgCATGTCTGAGGCACTCAGTGAGTATATCGTGTCCTAAACATAACTTTAGAGTCTCCACTCTCATTGACAACCTGGTTggttatttaatagttttataatGCTTACtagagTCATGGACACGGACGCGTCTCTCCTCCTCGGTGTTGAACACGAGCAGAAACAACAAGAAGAGCTTTACCAACAACTTCTGCTTCAGACCATGGGCAAATTGCAGAGCGACAGTCCCCCTTCCAAAGTCATCCGTCCACAGCCtgGTCTGTGCGTGAAGACCTCCTCAGTGTCAGACAAAAAGAAGGTCTTTCTAAACATCTGCCAGTCACAGACGGTACCGCCACCTCCTCACTTGTCCCA

Function


symbol description
pih1d1 Acts upstream of or within axonemal dynein complex assembly. Predicted to be located in nucleus. Predicted to be part of R2TP complex and ribonucleoprotein complex. Predicted to be active in cytoplasm. Is expressed in Kupffer's vesicle; floor plate; otic vesicle; and pronephric duct. Orthologous to human PIH1D1 (PIH1 domain containing 1).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006605 protein targeting biological_process
GO:0006364 rRNA processing biological_process
GO:0070286 axonemal dynein complex assembly biological_process
GO:0000492 box C/D snoRNP assembly biological_process
GO:0072594 establishment of protein localization to organelle biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005680 anaphase-promoting complex cellular_component
GO:0097255 R2TP complex cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-147 Acts upstream of or within axonemal dynein complex assembly. Predicted to be located in nucleus. Predicted to be part of R2TP complex and ribonucleoprotein complex. Predicted to be active in cytoplasm. Is expressed in Kupffer's vesicle; floor plate; otic vesicle; and pronephric duct. Orthologous to human PIH1D1 (PIH1 domain containing 1).

Ensembl:

ensembl_id ENSDARG00000037955

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00051581 False 2088 lncRNA 0.40 10 32172534 32180804
TCONS_00051582 False 1118 mRNA 0.44 11 32172729 32180833
TCONS_00051583 False 781 lncRNA 0.42 4 32176346 32180815
TCONS_00051584 True 355 mRNA 0.48 4 32176846 32180796

Neighbor


gene id symbol gene type direction distance location
XLOC_026472 tnnt1 coding downstream 1656 32157140 ~ 32170878 (-)
XLOC_026471 baxb coding downstream 92618 32074806 ~ 32079916 (-)
XLOC_026470 BX511080.1 coding downstream 101066 32066983 ~ 32071468 (-)
XLOC_026469 NA coding downstream 215168 31935697 ~ 31957366 (-)
XLOC_026468 rnf113a coding downstream 247891 31919042 ~ 31924643 (-)
XLOC_026474 NA coding upstream 5066 32185899 ~ 32222085 (-)
XLOC_026475 cpt1cb coding upstream 48068 32228901 ~ 32290096 (-)
XLOC_026476 si:dkey-16p21.7 coding upstream 113912 32294745 ~ 32320543 (-)
XLOC_026477 NA coding upstream 144301 32325134 ~ 32337695 (-)
XLOC_026478 prmt1 coding upstream 176000 32356833 ~ 32363021 (-)
XLOC_026460 NA non-coding downstream 521823 31650253 ~ 31650711 (-)
XLOC_026457 NA non-coding downstream 572252 31511470 ~ 31600282 (-)
XLOC_026453 NA non-coding downstream 995325 31174133 ~ 31177209 (-)
XLOC_026450 NA non-coding downstream 1078770 31093212 ~ 31093764 (-)
XLOC_026481 NA non-coding upstream 384361 32565194 ~ 32572052 (-)
XLOC_026483 NA non-coding upstream 417811 32598644 ~ 32603191 (-)
XLOC_026499 NA non-coding upstream 1119361 33300194 ~ 33304123 (-)

Expression



Co-expression Network