G752844


Basic Information

Item Value
gene id G752844
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 81161813 ~ 81166849 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU854865
CTACTGTAGCGCTGCTTCCTGTCTCTACTGTAgcgctgctttctgtctctactgtaacgctgctttctgtctctactgtaacactgctttctgtctctactgtaacactgctttctgtctctactgtaacgctgctttctgtctctactgtaacgctgctttctgtctctactgtaacgctgctttctgtctctacagtaacgctgctttctgtctctactgtaacactgctttctgtctctactgtaacactgctttctgtctctactgtaacactgctttctgtctctacagtaacgctgctttctgtctctactgtagcactgctttctgtctctactgtaacactgctttctgtctctactgtaacactgctttctgtctctactgtaacgctgctttctgtctctactgtaacactgctttctgtctctactgtaacgctgctttctgtctctacagtaacgctgctttctgtctctactgtaacggtgctttctgtctctactgtaacgctgctttctgtctctactgtaacactgctttctgtctctactgtaacgctgctttctgtctctattgtagcgctgctttctgtctctctactgtaacgctgctttctgtctctactgtaacactgctttctgtctctactgtaacgctgctttctgtctctactgtaacgctgctttctgtctctctacagtagcgctgctttctgtctctactgtaacactgctttctgtctctactgtaacg
>TU854864
ctgctttctgtctctactgtaacggtgctttctgtctctactgtaacgctgctttctgtctctctactgtaacgctgctttctgtctctactgtaacgctgctttctgtctctactgtagcgctgctttctgtctctacactaacgctgctttctgtctctactgtaacgctgctttctgtctctactgtaacactgctttctgtctctactgtaacactgctttctgtctctactgtaacggtgctttctgtctctactgtaacgctgctttctgtctctactgtaacactgctttctgtctctactgtaacggtgctttctgtctctactgtaacgctgctttctgtctctactgtaacgctgctttctgtctctactgtaacactgctttctgtctctctacagtaacactgctttctgtctctactgtaacgctgctttctgtctctactgtaacgctgctttctgtctctactgtaacactgctttctgtctctactgtaacactgctttctgtctctactgtaacgctgctttctgtctctactgtaacactgctttctgtctctactgtaacgctgctttctgtctctacagtaacgctgctttctgtctctactgtaacggtgctttctgtctctactgtaacgctgctttctgtctctactgtaacactgctttctgtctctactgtaacgctgctttctgtctctattgtagcgctgctttctgtctctctactgtaacgctgctttctgtctctactgtaacactgctttctgtctctactgtaacgctgctttctgtctctactgtaacgctgctttctgtctctctacagtagcgctgctttctgtctctactgtaacactgctttctgtctctactgtaacg
>TU854862
taacgctgctttctgtctctactgtaatgctgctttctgtctctactgtaacgctgctttctgtctctacagtaacgctgctttctgtctctactgtaacgctgctttctgtctctactgtaacgctgctttctgtctctactgtaacgctgctttctgtctctactgtaacgctgctttctgtctctacagtaacgctgctttctgtctctactgtaacgctgctttctgtctctactgtaacgctgctttctgtctctactgtaacgctgctttctgtctctactgtaacactgctttctgtctctctactgtaacactgctttctgtctctactgtaacgctgctttctgtctctactgtaacgctgc
>TU854866
gtaacactgctttctgtctctactgtaacgctgctttctgtctctactgtaacactgctttctgtctctactgtaacgctgctttctgtctctactgtaacactgctttctgtctctacactaacgctgctttctgtctctctactgtaacgctgctttctgtctctactgtaacgctgctttctgtctctactgtaacactgctttctgtctctactgtaacgctgctttctgtctctactgtaatgctgctttctgtctctctactgtaacactgctttctgtctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU854865 False 759 lncRNA 0.45 3 81161813 81166849
TU854864 False 896 lncRNA 0.45 3 81162504 81166849
TU854862 False 371 lncRNA 0.45 2 81163517 81166363
TU854866 True 288 lncRNA 0.44 2 81163998 81165951

Neighbor

gene id symbol gene type direction distance location
LOC110530752 LOC106569631 coding upstream 85916 81037101 ~ 81075897 (+)
LOC110530803 LOC106569635 coding upstream 196424 80938422 ~ 80965389 (+)
LOC110530801 LOC106600593 coding upstream 237247 80898235 ~ 80924566 (+)
map6d1 LOC106569659 coding upstream 822092 80328531 ~ 80339721 (+)
acsm3 acsm3 coding upstream 834320 80312525 ~ 80327493 (+)
LOC110530754 NA coding downstream 29318 81196167 ~ 81200421 (+)
LOC118965638 NA coding downstream 190110 81356959 ~ 81365769 (+)
LOC110529142 NA coding downstream 250291 81417140 ~ 81418322 (+)
LOC110530755 LOC106569585 coding downstream 251523 81418372 ~ 81444081 (+)
LOC110530757 LOC106569574 coding downstream 454285 81621134 ~ 81632686 (+)
G752838 NA non-coding upstream 17430 81140167 ~ 81144383 (+)
G752837 NA non-coding upstream 23205 81138317 ~ 81138608 (+)
G752820 NA non-coding upstream 46983 81114391 ~ 81114830 (+)
G752814 NA non-coding upstream 51841 81109734 ~ 81109972 (+)
G752811 NA non-coding upstream 57032 81104477 ~ 81104781 (+)
G752772 NA non-coding downstream 3280 81170129 ~ 81170407 (+)
G752980 NA non-coding downstream 46359 81213208 ~ 81214740 (+)
G752981 NA non-coding downstream 48121 81214970 ~ 81215730 (+)
G753005 NA non-coding downstream 111131 81277980 ~ 81279340 (+)
G753007 NA non-coding downstream 115692 81282541 ~ 81283337 (+)
G752398 NA other upstream 419868 80741604 ~ 80741945 (+)
G752357 NA other upstream 527761 80631310 ~ 80634052 (+)
LOC110530726 LOC106600567 other upstream 1591936 79548127 ~ 79579010 (+)
ncana LOC106569686 other upstream 1814365 79210727 ~ 79347454 (+)
G750935 NA other upstream 1964435 79195270 ~ 79197378 (+)
G753205 LOC106569572 other downstream 319971 81486820 ~ 81487610 (+)
sdhc LOC106569582 other downstream 616500 81783282 ~ 81802285 (+)
G753337 NA other downstream 755313 81922162 ~ 81931491 (+)
G754927 NA other downstream 2088890 83255739 ~ 83257866 (+)
G755286 NA other downstream 2462523 83629372 ~ 83629738 (+)

Expression


Co-expression Network