XLOC_026474


Basic Information

Item Value
gene id XLOC_026474
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32185899 ~ 32222085 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053059
GTTTGGTCAGTTCACCCACGACTTTTCTGGTATCTTGGGGGCATTTTAAATTCCCAGAAACACAAGGGGCTCGATTCTTAAGGCTGGAAAACGAAAGTATGTTGCAGAGCAAGAGAAGGCGTCAGAAAGACAACAACATTGTGACATATGGAGCTGAACTCTAATGGTTAAGAAGACTCCGTAATGATTGGGAAAGTTTGGACACTGATCATTGTATTATCACTCATCAAATTTATTCATCATATCCAAGCTGAATGTATGCAACAAGATATTGAGGAACACCTGATTAACGAGTTGATGGAAGACCATGTGTTTGAGATTAAGGTATTCTCATCTGAGACAAAGGTAAGTACAATGAATCCAAGCTTCTAACAGTCATAAATACTCTTTGTTCATACATGaccaaaaataacaacaaagacAAAAAATTCCGTGTATTGGAAACATTTGAAATCATGCTAAAGTATCTAGACAATAACATCACCAACTTTTGTGccacacacacctgcatggatgctTCCTCAGTAAGATATGTTAATAAAAGGACATTCCGTGATATGTATCTACATTCTTGCAATAGTTCAGTATCAGATCTGAAGTGCCCATCAGATAGCACAACACCTTTCACAACTATCAGCCCTAATGACACTGCTTTTAAAAGAACAACATTTTTAACGACAGTCAGTTCAACGTACACAGTTCACAATGGAAGTATAACATCTTCTACGGCGGTCACCCCAAACTTTACACCCCAAACTGAAAATCAGACAATTGTAGATTCATTGACAACTTCATCCTCACCTAAAGAATCAATCTATGAGAAAGTAATAGCTGAAAATCAGAATCTCCAGACTACCATTAAAACAATTTCTGTGGCCTTTGCTGTCTCTCTACTACTCAATGTCTTTCTACTCCTGTCACATTTGTGGAATCGCAAGaGAAGAGGTTCTCAAGGGacagCTGAAGTAAATGAGTTGAGCCGCTTGCATTCACCATTGGAAAGCACATGTCTCTGTGATGGTCCCCCGTCTCCTTCCTGTtgatcttacaaaaaaaaaaaacctgcatggTATTGTACTTTTTGAACCGGCGGCTGACAAAATCATCCAAGTGCAGCTTATTAAATCAATATGCTCAAGTGTTTGAACACAGCTTCTGTATATGTCCACCTATGAGTGCCCCTCTATAACTGTTATATTCTTTTATCTGTCAAGCACCTCTATTCatgttttttgatgttgtttgCTCTGTGATGATCATGTTAGCTATAAGATATGGATTAAGAAAGGACCCTTCAGCACTCAGGAGTGACTGCACGCTAAAGACAGGTCTTTAAGAAAGGGACGGAAAACTCTTTACAGCTAAAGTACTCTACAATTATTGTTATATGTACATTGTttttaaagcagttaatttttgtattaatgtactttgttttgctatttttatattttcttgtgTTTTTGTACATAGCCTTTATGTGTTTTATTCTGGGTATCTCAGATtgcttattatatttttatattgatgcatttgtgtaaatgtgttgtttatttgcagttttgtttgtataaaatcaaaaatattattatgtgCATCCTAAACCCTATTAAATGGCACAAAAAAGTTCTCATTAAAAATCGAATAGCATTTCATTGCAACTTGTCTTCATTACTCCGGTGGGGTTATGTTATAAAGaatgtattattaattttcatattcatattcatgcTCCACATTCTCCATATGCagcacatttaataataatactaataataataattgtagggaaattttaaagtttttaccCAAGAAATAGCCAGTGCATCAGATGAAGAGCTTCAAAGattcaagtttactgaagatagtttgtagtttcatcagc
>TCONS_00051585
ATGAGAAAGTAATAGCTGAAAATCAGAATCTCCAGACTACCATTAAAACAATTTCTGTGGCCTTTGCTGTCTCTCTACTACTCAATGTCTTTCTACTCCTGTCACATTTGTGGAATCGCAAGaGAAGAGGTTCTCAAGGGacagCTGAAGTAAATGAGTTGAGCCGCTTGCATTCACCATTGGAAAGCACATGTCTCTGTGATGGTCCCCCGTCTCCTTCCTGTtgatcttacaaaaaaaaaaaacctgcatggTATTGTACTTTTTGAACCGGCGGCTGACAAAATCATCCAAGTGCAGCTTATTAAATCAATATGCTCAAGTGTTTGAACACAGCTTCTGTATATGTCCACCTATGAGTGCCCCTCTATAACTGTTATATTCTTTTATCTGTCAAGCACCTCTATTCatgttttttgatgttgtttgCTCTGTGATGATCATGTTAGCTATAAGATATGGATTAAGAAAGGACCCTTCAGCACTCAGGAGTGACTGCACGCTAAAGACAGGTCTTTAAGAAAGGGACGGAAAACTCTTTACAGCTAAAGTACTCTACAATTATTGTTATATGTACATTGTttttaaagcagttaatttttgtattaatgtactttgttttgctatttttatattttcttgtgTTTTTGTACATAGCCTTTATGTGTTTTATTCTGGGTATCTCAGATtgcttattatatttttatattgatgcatttgtgtaaatgtgttgtttatttgcagttttgtttgtataaaatcaaaaatattattatgtgCATCCTAAACCCTATTAAATGGCACAAAAAAGTTCTCATTAAAAATCGAATAGCA
>TCONS_00051586
GTTTATGACTTGCTATCTGTTCTTACATTTAAGTGATTTCTTAAATGTCTTCTTTAAATTATTATAGATTAACGAGTTGATGGAAGACCATGTGTTTGAGATTAAGGTATTCTCATCTGAGACAAAGGTAAGTACAATGAATCCAAGCTTCTAACAGTCATAAATACTCTTTGTTCATACATGaccaaaaataacaacaaagacAAAAAATTCCGTGTATTGGAAACATTTGAAATCATGCTAAAGTATCTAGACAATAACATCACCAACTTTTGTGccacacacacctgcatggatgctTCCTCAGTAAGATATGTTAATAAAAGGACATTCCGTGATATGTATCTACATTCTTGCAATAGTTCAGTATCAGGTATGGACATCTACACTtgcattttttccttttttttttttttgcagaacaaattcattaattag
>TCONS_00051588
GGGGTGGGGACTTTCTCCATTTGTCCATAAGCTCTTAACCGGCGGCAAACGCGACACTTTCCACGGCACACCCACGCTGCCCTTATgaacatatacatttatttataaacaccGTCAGATTCCGTTTGGTCAGTTCACCCACGACTTTTCTGGTATCTTGGGGGCATTTTAAATTCCCAGAAACACAAGGGGCTCGATTCTTAAGGCTGGAAAACGAAAGTATGTTGCAGAGCAAGAGAAGGCGTCAGAAAGACAACAACATTGTGACATATGGAGCTGAACTCTAATGGTTAAGAAGACTCCGTAATGATTGGGAAAGTTTGGACACTGATCATTGTATTATCACTCATCAAATTTATTCATCATATCCAAGCTGAATGTATGCAACAAGATATTGAGGAACACCTGGTGAGTCTAATCTTTGTCATTCTATTATTTTCTTGCAGTTAGCTGCCATTACTCTTTTAGAAAAATCACTCAG
>TCONS_00051587
GGGGTGGGGACTTTCTCCATTTGTCCATAAGCTCTTAACCGGCGGCAAACGCGACACTTTCCACGGCACACCCACGCTGCCCTTATgaacatatacatttatttataaacaccGTCAGATTCCGTTTGGTCAGTTCACCCACGACTTTTCTGGTATCTTGGGGGCATTTTAAATTCCCAGAAACACAAGGGGCTCGATTCTTAAGGCTGGAAAACGAAAGTATGTTGCAGAGCAAGAGAAGGCGTCAGAAAGACAACAACATTGTGACATATGGAGCTGAACTCTAATGGTTAAGAAGACTCCGTAATGATTGGGAAAGTTTGGACACTGATCATTGTGAGTAATTATTAAGCAATAACATGTTAGTACAGGTCCTGGGAACAAAATGGATGCATTTCAGTGAATTGTAGTGTGACTTAGGTTATTGTATTACAAGAAGAGCTGAACTAGTcataatgttaacaaaataattattttttaatgaattatcTACAAATGGGACTTGATTTTTGCCCTTTCCATCAAAGGTATTATCACTCATCAAATTTATTCATCATATCCAAGCTGAATGTATGCAACAAGATATTGAGGAACACCTGGTGAGTCTAATCTTTGTCATTCTATTATTTTCTTGCAGTTAGCTGCCATTACTCTTTTAGAAAAATCACTCAG

Function

GO:

id name namespace
GO:0022407 regulation of cell-cell adhesion biological_process
GO:0030155 regulation of cell adhesion biological_process
GO:0009888 tissue development biological_process
GO:0043062 extracellular structure organization biological_process
GO:0042221 response to chemical biological_process
GO:0071711 basement membrane organization biological_process
GO:0032501 multicellular organismal process biological_process
GO:0045121 membrane raft cellular_component
GO:0098857 membrane microdomain cellular_component
GO:0005901 caveola cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0044877 protein-containing complex binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097646 ENSDARG00000117414 ENSDARG00000117436

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053059 False 1885 lncRNA 0.35 16 32185899 32221962
TCONS_00051585 False 834 processed_transcript 0.35 5 32186134 32187385
TCONS_00051586 False 438 lncRNA 0.32 3 32194752 32196043
TCONS_00051588 False 481 lncRNA 0.41 3 32196192 32222085
TCONS_00051587 True 672 lncRNA 0.38 2 32196192 32222085

Neighbor

gene id symbol gene type direction distance location
XLOC_026473 pih1d1 coding downstream 5066 32172534 ~ 32180833 (-)
XLOC_026472 tnnt1 coding downstream 15021 32157140 ~ 32170878 (-)
XLOC_026471 baxb coding downstream 105983 32074806 ~ 32079916 (-)
XLOC_026470 BX511080.1 coding downstream 114431 32066983 ~ 32071468 (-)
XLOC_026469 NA coding downstream 228533 31935697 ~ 31957366 (-)
XLOC_026475 cpt1cb coding upstream 6816 32228901 ~ 32290096 (-)
XLOC_026476 si:dkey-16p21.7 coding upstream 72660 32294745 ~ 32320543 (-)
XLOC_026477 NA coding upstream 103049 32325134 ~ 32337695 (-)
XLOC_026478 prmt1 coding upstream 134748 32356833 ~ 32363021 (-)
XLOC_026479 si:ch211-195b15.7 coding upstream 236635 32458720 ~ 32472155 (-)
XLOC_026460 NA non-coding downstream 535188 31650253 ~ 31650711 (-)
XLOC_026457 NA non-coding downstream 585617 31511470 ~ 31600282 (-)
XLOC_026453 NA non-coding downstream 1008690 31174133 ~ 31177209 (-)
XLOC_026450 NA non-coding downstream 1092135 31093212 ~ 31093764 (-)
XLOC_026481 NA non-coding upstream 343109 32565194 ~ 32572052 (-)
XLOC_026483 NA non-coding upstream 376559 32598644 ~ 32603191 (-)
XLOC_026499 NA non-coding upstream 1078109 33300194 ~ 33304123 (-)
XLOC_026500 CABZ01012959.1 non-coding upstream 1121991 33344076 ~ 33345247 (-)
XLOC_026466 zp3e coding downstream 130521 31875772 ~ 32055378 (-)

Expression


Co-expression Network