XLOC_026475 (cpt1cb)


Basic Information

Item Value
gene id XLOC_026475
gene name cpt1cb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32228901 ~ 32290096 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051589
GTGTTTATACACATTTTACCTCAGGTATGTGTTGCTGCAAGTCAAAGTGTGGAGATCGCAAAGTTTACATCAGTCGGAAGAAGCTGTTCCCGAACTTTCATTCAACAAACTCACAGTGATGGCTGAGGCTCACCAAGCAGTGGCATTTCAGTTCACCATCAGTCCTGAGGGGATCAACCTGCATCTGTCTTACCAAGCCCTCAATCAAATCTACCTCTCCGGATTGCGATCCTGGAAGAAGCGCATCAGCAGGATTAAGAACAGGATCATTAAGGGTGCTTATCCAGCTAGCCCCTCCTCGTGGCTTTTTATTGTCATTGCAATTCTAGCCACGATGTACATGCAGTCCGATCCATCAATGGGTCTCATCGCCAAGATCCAGGAACACCTGCCCCTTAGTCTGTCATTGAGTCCTCAAGGTCAGACCATGCTGTCGGCGCTGCTGTTCAGTACTCTGCTCTGGATGTCTCTCATTCTGACTCTGAGGTTCTGCCTGAAGCTTCTCTTGTCCTACCACAGGTGGATGTTTGAACAACATGGTCATATGTCTACCAAGACCAAAGTGTGGGCGACCCTAGTGAAGTTGTTGTCCTCTAGAAAGCCATTGCTGTACAGCTATCAGACGTCATTACCGCACCTGCCAGTACCTCCCATTAAAGACACACTGGAAAGATATCTAGAATCAGTCAAGCCACTGCTGGATTTGGACGGTTTCCAGAGAATGAGAAGACTGACTTCAGAGTTTGAGAAAAGTCTTGGTAACCGCCTGCAGAGATACCTCAGACTCAAAGCACTGTGGGCCACAAACTATGTTAGTGACTGGTGGGAGGAGTATGTTTACCTCCGGAGCCGGAGTCCAATCATGGTCAATAGTAACTACTATGGCATGGATTTCTTGTACGTGACTCCAACTCCTAATCAGGCAGCTCGAGCTGGGAATACTATCACTGCCCTGTTCCTGTATCGCCGAAAGGTCAACCGAGAGGAGCTAAATCCTAGTCGTATTCCTGGTACGGTCATACCGCTGTGTGCAGCTCAGTGTGAGCGCATGTTCAACACCACTCGAACACCTGGAGAAGAGACTGATGTTCTGCAGCACTGGCAGGACAGCGAGTTTGTTGCTGTTTATCACAGAGGCCGTTACTTCAGATTATGGGTCTACCGAGCTGGACGATTGCTTTCACCTAGAGAGATCCAATTTCAGATTCAAAGGATTTTGGATGACCCCTCACCTCCTTCTCCAGGAGAGGAGAAACTAGGAGCACTGACAGCAGGAAACCGGACACCCTGGGCTCGTGTGAGAAAGCAGTTCTTCAGCTCTGGAGTCAATAAGCAATCGCTAGACTGCATTGAGAAAGCAGCATTTTTTGTCACGCTTGATGACCAAGCGGAAGGCATGAAGGGGGAAAATCCCTCTGAGAATTTGGACCGATATGCCAAATCTCTTCTTCATGGAAAATGCTATGACAGGTGGTTTGACAAGTCATTTTCTGTTGTGGTGTATAAGAATGGAAAAAATGGGCTGAATGCAGAACATTCTTGGGCCGATGCACCCATAGTAGCCCACCTGTGGGAGTTCACTCTTGCCACAGACACATTTCACTTGGGTTACAACTCAGATGGAAATTGCAGGGGAGATGTAGACCACTCTTTACCACATCCTCAACGCTTGAGCTGGGACATACCGTTTGAGGTTCAGACTCAGATATCAGAGTCTCTTGCTGTTGCTCAAGCACTGGCCGATGAAGTGGACTGTCATGTTTTTCCCTTCAGAAAGTTTGGCAAAGGCCTCATCAAGAAAATGAAACTCAGCCCAGATTCATTTGTGCAGCTGGCTCTGCAGCTGGCCTATTACAGGGATAGGGGGACTTTCTGTCTGACATATGAAGCTTCCATGACGCGCCTGTTTCGTGAGGGCCGCACCGAAACCGTACGCTCCTGCTCCAATGAAAGTTGTGCTTTTGTCCTTGCACTGGAAGGAGGAGAGgaCAGAGAACAATGCAGAAAGCTCCTCCGTAAAACTGCTGAGAAGCATCAGAACCTCTACCGCTTGGCCATGACTGGATCTGGCATTGATAGACACCTCTTCTGCCTATATGTAGTCTCAAAATACCTGGGGGTAGAGTCTCCTTTCCTTAAAGAGGTTTTGTCAGAGCCCTGGCGCCTCTCTACATCTCAGACACCTGTGCAACAGATGGAGCTGTTTGATCTAGTCAACCACCCAGAGTTCATCTCCCTGGGGGGAGGCTTTGGTCCTGTAGCTGATGATGGCTACGGTGTGTCTTACATCATCATGGGAGAGGACATGATCAACTTCCATGTGTCTTGCAAGCACTCCTGCAAAGAGACAGACTCTCATAAATTTGGCTGTCAGGTCAGTCAAGCCATGGTGGATCTTATGACCCTGCTAAACCCTGACTTCAGAGACACCACAGAAGCCAACTCGGATGAACAGACTTAAAACTGGTTTATACTCATGTCTTTTATGATATATGCAACTATGTCAGTTTCAATGGGAGaaacaaaagaatttaaaatCTC
>TCONS_00051590
TTGCTGTACAGCTATCAGACGTCATTACCGCACCTGCCAGTACCTCCCATTAAAGACACACTGGAAAGATATCTAGAATCAGTCAAGCCACTGCTGGATTTGGACGGTTTCCAGAGAATGAGAAGACTGACTTCAGAGTTTGAGAAAAGTCTTGGTAACCGCCTGCAGAGATACCTCAGACTCAAAGCACTGTGGGCCACAAACTATGTTAGTGACTGGTGGGAGGAGTATGTTTACCTCCGGAGCCGGAGTCCAATCATGGTCAATAGTAACTACTATGGCATGGATTTCTTGTACGTGACTCCAACTCCTAATCAGGCAGCTCGAGCTGGGAATACTATCACTGCCCTGTTCCTGTATCGCCGAAAGGTCAACCGAGAGGAGCTAAATCCTAGTCGTATTCCTGGTACGGTCATACCGCTGTGTGCAGCTCAGTGTGAGCGCATGTTCAACACCACTCGAACACCTGGAGAAGAGACTGATGTTCTGCAGCACTGGCAGGACAGCGAGTTTGTTGCTGTTTATCACAGAGGCCGTTACTTCAGATTATGGGTCTACCGAGCTGGACGATTGCTTTCACCTAGAGAGATCCAATTTCAGATTCAAAGGATTTTGGATGACCCCTCACCTCCTTCTCCAGGAGAGGAGAAACTAGGAGCACTGACAGCAGGAAACCGGACACCCTGGGCTCGTGTGAGAAAGCAGTTCTTCAGCTCTGGAGTCAATAAGCAATCGCTAGACTGCATTGAGAAAGCAGCATTTTTTGTCACGCTTGATGACCAAGCGGAAGGCATGAAGGGGGAAAATCCCTCTGAGAATTTGGACCGATATGCCAAATCTCTTCTTCATGGAAAATGCTATGACAGGTGGTTTGACAAGTCATTTTCTGTTGTGGTGTATAAGAATGGAAAAAATGGGCTGAATGCAGAACATTCTTGGGCCGATGCACCCATAGTAGCCCACCTGTGGGAGTTCACTCTTGCCACAGACACATTTCACTTGGGTTACAACTCAGATGGAAATTGCAGGGGAGATGTAGACCACTCTTTACCACATCCTCAACGCTTGAGCTGGGACATACCGTTTGAGGTTCAGACTCAGATATCAGAGTCTCTTGCTGTTGCTCAAGCACTGGCCGATGAAGTGGACTGTCATGTTTTTCCCTTCAGAAAGTTTGGCAAAGGCCTCATCAAGAAAATGAAACTCAGCCCAGATTCATTTGTGCAGCTGGCTCTGCAGCTGGCCTATTACAGGGATAGGGGGACTTTCTGTCTGACATATGAAGCTTCCATGACGCGCCTGTTTCGTGAGGGCCGCACCGAAACCGTACGCTCCTGCTCCAATGAAAGTTGTGCTTTTGTCCTTGCACTGGAAGGAGGAGAGgaCAGAGAACAATGCAGAAAGCTCCTCCGTAAAACTGCTGAGAAGCATCAGAACCTCTACCGCTTGGCCATGACTGGATCTGGCATTGATAGACACCTCTTCTGCCTATATGTAGTCTCAAAATACCTGGGGGTAGAGTCTCCTTTCCTTAAAGAGGTCAGTGTATGTTTGTATTTGGAGAGACTGATTCATTTTGCAAAGTCtatgatgcatttttttatatgA
>TCONS_00051591
CAAGTCAAAGTGTGGAGATCGCAAAGTTTACATCAGTCGGAAGAAGCTGTTCCCGAACTTTCATTCAACAAACTCACAGTGATGGCTGAGGCTCACCAAGCAGTGGCATTTCAGTTCACCATCAGTCCTGAGGGGATCAACCTGCATCTGTCTTACCAAGCCCTCAATCAAATCTACCTCTCCGGATTGCGATCCTGGAAGAAGCGCATCAGCAGGATTAAGAACAGGATCATTAAGGGTGCTTATCCAGCTAGCCCCTCCTCGTGGCTTTTTATTGTCATTGCAATTCTAGCCACGATGTACATGCAGTCCGATCCATCAATGGGTCTCATCGCCAAGATCCAGGAACACCTGCCCCTTAGTCTGTCATTGAGTCCTCAAGGTCAGACCATGCTGTCGGCGCTGCTGTTCAGTACTCTGCTCTGGATGTCTCTCATTCTGACTCTGAGGTTCTGCCTGAAGCTTCTCTTGTCCTACCACAGGTGGATGTTTGAACAACATGGTCATATGTCTACCAAGACCAAAGTGTGGGCGGTTAGTGCTTCATTACTTTCAGCctggtttaaaaaaatacattttcattttttttcttagttcATTCTTTCTTGAAACAATAACAAAAAGGATTTGTGTTCTGAGCAtgtgttcagatttttacttggcCTGCAATACAATACATTAATAAAGCATGCTTATATAGTAGAATTTGTATGTAATCTAATCTATATGTAATCTAGTTTAATATGTtacttattattatgattattactgaacacacatgcatgtacagctatctttataagGACTTCCCACAGATGCAATGCTTTTCATACTGCACAAGCTATATATTTTATCCCC

Function

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0009437 carnitine metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0004095 carnitine O-palmitoyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-155 Predicted to enable carnitine O-palmitoyltransferase activity. Predicted to be involved in carnitine metabolic process and fatty acid metabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Is expressed in EVL; periderm; and polster. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 73. Orthologous to human CPT1C (carnitine palmitoyltransferase 1C).

Ensembl:

ensembl_id ENSDARG00000037943

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051589 False 2541 mRNA 0.48 19 32228901 32290096
TCONS_00051590 False 1608 mRNA 0.48 12 32240439 32275975
TCONS_00051591 True 858 lncRNA 0.41 4 32279082 32290059

Neighbor

gene id symbol gene type direction distance location
XLOC_026474 NA coding downstream 6816 32185899 ~ 32222085 (-)
XLOC_026473 pih1d1 coding downstream 48068 32172534 ~ 32180833 (-)
XLOC_026472 tnnt1 coding downstream 58023 32157140 ~ 32170878 (-)
XLOC_026471 baxb coding downstream 148985 32074806 ~ 32079916 (-)
XLOC_026470 BX511080.1 coding downstream 157433 32066983 ~ 32071468 (-)
XLOC_026476 si:dkey-16p21.7 coding upstream 4649 32294745 ~ 32320543 (-)
XLOC_026477 NA coding upstream 35038 32325134 ~ 32337695 (-)
XLOC_026478 prmt1 coding upstream 66737 32356833 ~ 32363021 (-)
XLOC_026479 si:ch211-195b15.7 coding upstream 168624 32458720 ~ 32472155 (-)
XLOC_026480 rcn3 coding upstream 245890 32535986 ~ 32541072 (-)
XLOC_026469 NA non-coding downstream 271535 31935697 ~ 31957366 (-)
XLOC_026460 NA non-coding downstream 578190 31650253 ~ 31650711 (-)
XLOC_026457 NA non-coding downstream 628619 31511470 ~ 31600282 (-)
XLOC_026453 NA non-coding downstream 1051692 31174133 ~ 31177209 (-)
XLOC_026481 NA non-coding upstream 275098 32565194 ~ 32572052 (-)
XLOC_026483 NA non-coding upstream 308548 32598644 ~ 32603191 (-)
XLOC_026499 NA non-coding upstream 1010098 33300194 ~ 33304123 (-)
XLOC_026500 CABZ01012959.1 non-coding upstream 1053980 33344076 ~ 33345247 (-)

Expression


Co-expression Network