G753205 (LOC106569572)


Basic Information

Item Value
gene id G753205
gene name LOC106569572
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 81486820 ~ 81487610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU855291
CCTTTCCTTGATGGACATCTGCTTGGCGGACATCTCTGAGAGCTCTGTCTTGGCGGGGGAGAGGAGGTCGGACACACTGTGTCCTGCGAAGACTTCACTGCTGTCCAGAGGCATGGACTTGGACTTGACCAGGGACTGGGGGAAGGACGTGGGCTCGGGTAGGGTCTGGGGAGTGGTCTGGGGAGGGGGCGGAGGAGGCTGGGGGAAGGACTGGGCTTTGGGTTGAGTATGAGGGGTTATCTGAGAGTAGGGCTTGGGTAATGGCTGGGTGAATCGTCTCTCCCTTTCCTGGGGCTTGGGCTGGGCTGAAAGTGCCTGGGTGAAGGGATGGGGTTGAGGTGGATGAGCGTAAggctggggatggggctgggGTGGATGAGCGTAAggctggggatggggctgggGTGGATGAGCGTAAGgctggggatggggctggagtTGAGTTTGTGGGGGTTGTTGGGTGTAAGGTTTGGGCAGAGTCTGGGGAAGCTGGGTGAAAGACTGAACCTGCTGCTGCTGGACACTGGCGCTGTGAGAGACCCTCCTGGACGACACCACTGTTGTGGCAGTTCTCAATGACACACTGGTGTGATCCGCGTCTGTGTAGACATGAagaaagcaacacacacacaatgcattgTAATAAATCCATAGTGAAA
>TU855292
CCTTTCCTTGATGGACATCTGCTTGGCGGACATCTCTGAGAGCTCTGTCTTGGCGGGGGAGAGGAGGTCGGACACACTGTGTCCTGCGAAGACTTCACTGCTGTCCAGAGGCATGGACTTGGACTTGACCAGGGACTGGGGGAAGGACGTGGGCTCGGGTAGGGTCTGGGGAGTGGTCTGGGGAGGGGGCGGAGGAGGCTGGGGGAAGGACTGGGCTTTGGGTTGAGTATGAGGGGTTATCTGAGAGTAGGGCTTGGGTAATGGCTGGGTGAATCGTCTCTCCCTTTCCTGGGGCTTGGGCTGGGCTGAAAGTGCCTGGGTGAAGGGATGGGGTTGAGGTGGATGAGCGTAAGgctggggatggggctggagtTGAGTTTGTGGGGGTTGTTGGGTGTAAGGTTTGGGCAGAGTCTGGGGAAGCTGGGTGAAAGACTGAACCTGCTGCTGCTGGACACTGGCGCTGTGAGAGACCCTCCTGGACGACACCACTGTTGTGGCAGTTCTCAATGACACACTGGTGTGATCCGCGTCTGTGTAGACATGAagaaagcaacacacacacaatgcattgTAATAAATCCATAGTGAAA
>TU855293
CCTTTCCTTGATGGACATCTGCTTGGCGGACATCTCTGAGAGCTCTGTCTTGGCGGGGGAGAGGAGGTCGGACACACTGTGTCCTGCGAAGACTTCACTGCTGTCCAGAGGCATGGACTTGGACTTGACCAGGGACTGGGGGAAGGACGTGGGCTCGGGTAGGGTCTGGGGAGTGGTCTGGGGAGGGGGCGGAGGAGGCTGGGGGAAGGACTGGGCTTTGGGTTGAGTATGAGGGGTTATCTGAGAGTAGGGCTTGGGTAATGGCTGGGTGAATCGTCTCTCCCTTTCCTGGGGCTTGGGCTGGGCTGAAAGTGCCTGGGTGAAGGGATGGGGTTGAGGTGGATGAGCGTAAggctggggatggggctgggGTGGATGAGCGTAAGgctggggatggggctggagtTGAGTTTGTGGGGGTTGTTGGGTGTAAGGTTTGGGCAGAGTCTGGGGAAGCTGGGTGAAAGACTGAACCTGCTGCTGCTGGACACTGGCGCTGTGAGAGACCCTCCTGGACGACACCACTGTTGTGGCAGTTCTCAATGACACACTGGTGTGATCCGCGTCTGTGTAGACATGAagaaagcaacacacacacaatgcattgTAATAAATCCATAGTGAAA
>TU855294
CCTTTCCTTGATGGACATCTGCTTGGCGGACATCTCTGAGAGCTCTGTCTTGGCGGGGGAGAGGAGGTCGGACACACTGTGTCCTGCGAAGACTTCACTGCTGTCCAGAGGCATGGACTTGGACTTGACCAGGGACTGGGGGAAGGACGTGGGCTCGGGTAGGGTCTGGGGAGTGGTCTGGGGAGGGGGCGGAGGAGGCTGGGGGAAGGACTGGGCTTTGGGTTGAGTATGAGGGGTTATCTGAGAGTAGGGCTTGGGTAATGGCTGGGTGAATCGTCTCTCCCTTTCCTGGGGCTTGGGCTGGGCTGAAAGTGCCTGGGTGAAGGGATGGGGTTGAGGTGGATGAGCGTAAggctggggatggggctggggtggATGAGAGTAAggctggggatggggctggggtggATGAGAGTaaggctggggatggagctgagGTGGATGAGCGTAAggctggggatggggctgggGTGGATGAGCGTAAGgctggggatggggctggagtTGAGTTTGTGGGGGTTGTTGGGTGTAAGGTTTGGGCAGAGTCTGGGGAAGCTGGGTGAAAGACTGAACCTGCTGCTGCTGGACACTGGCGCTGTGAGAGACCCTCCTGGACGACACCACTGTTGTGGCAGTTCTCAATGACACACTGGTGTGATCCGCGTCTGTGTAGACATGAagaaagcaacacacacacaatgcattgTAATAAATCCATAGTGAAA

Function

NR:

description
PREDICTED: supervillin-like isoform X8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU855291 False 659 lncRNA 0.58 3 81486820 81487610
TU855292 False 593 lncRNA 0.57 2 81486820 81487610
TU855293 False 626 lncRNA 0.57 2 81486820 81487610
TU855294 True 725 TUCP 0.58 2 81486820 81487610

Neighbor

gene id symbol gene type direction distance location
LOC110530755 LOC106569585 coding upstream 45092 81418372 ~ 81444081 (+)
LOC110529142 NA coding upstream 68498 81417140 ~ 81418322 (+)
LOC118965638 NA coding upstream 121051 81356959 ~ 81365769 (+)
LOC110530754 NA coding upstream 286399 81196167 ~ 81200421 (+)
LOC110530753 LOC106600601 coding upstream 297663 81076665 ~ 81189157 (+)
LOC110530757 LOC106569574 coding downstream 133524 81621134 ~ 81632686 (+)
dnaaf6 LOC106569578 coding downstream 145775 81633385 ~ 81636491 (+)
LOC110530761 LOC106569577 coding downstream 149059 81636669 ~ 81665274 (+)
lig1 lig1 coding downstream 179036 81666646 ~ 81692412 (+)
mpz myp0 coding downstream 223557 81711167 ~ 81743458 (+)
G753201 NA non-coding upstream 11253 81475273 ~ 81475567 (+)
G753193 NA non-coding upstream 24011 81461782 ~ 81462809 (+)
G753173 LOC106600477 non-coding upstream 25234 81448744 ~ 81461586 (+)
G753186 NA non-coding upstream 46380 81440082 ~ 81440440 (+)
G753216 NA non-coding downstream 16502 81504112 ~ 81504476 (+)
G753217 NA non-coding downstream 17139 81504749 ~ 81505003 (+)
G753219 NA non-coding downstream 21681 81509291 ~ 81509533 (+)
G753252 NA non-coding downstream 77148 81564758 ~ 81565004 (+)
G753256 NA non-coding downstream 90621 81578231 ~ 81578436 (+)
G752398 NA other upstream 744875 80741604 ~ 80741945 (+)
G752357 NA other upstream 852768 80631310 ~ 80634052 (+)
LOC110530726 LOC106600567 other upstream 1916943 79548127 ~ 79579010 (+)
ncana LOC106569686 other upstream 2139372 79210727 ~ 79347454 (+)
G750935 NA other upstream 2289442 79195270 ~ 79197378 (+)
sdhc LOC106569582 other downstream 295739 81783282 ~ 81802285 (+)
G753337 NA other downstream 434552 81922162 ~ 81931491 (+)
G754927 NA other downstream 1768129 83255739 ~ 83257866 (+)
G755286 NA other downstream 2141762 83629372 ~ 83629738 (+)
G755277 NA other downstream 2165435 83653045 ~ 83654438 (+)

Expression


Co-expression Network