XLOC_026477


Basic Information

Item Value
gene id XLOC_026477
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32325134 ~ 32337695 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053060
CACGACATCGCCCTCTTTTAGCTTGTAAAGGAGAAAGGTGAGGATGGTTGTAAGGATCTGATGGAGGCGTTTGCTGCCTGTGTGAAGAGCAATGCTGAGGCATCATGAGGAGCTCAACATGCAGGAAAAGGGTTAACTGCACTGAGTCCTCCACCTTCCCAGCATTCCCTGCAGCTCATGGCACTGGACTAAATGATGGGGTTTGGCTGCAGAGACCATTCTTGTGTCTCTTCCCTTCTCCACCCCTCCTGTGAAGCTTAAATGGATTCCTTCTACCACCAACCTTCCCTCCCCTTTTTGTGGCTGATTGTATTGATCTGATTTGTAGATCGTTCGGAGCTCATGAATTGATGTAAATGATGTGTCTCAGATGCTTACAAAATggaataaagattttaaaatggtCCAATGTGT
>TCONS_00051598
GCTCTTTATATTTAAATTGACCAGCTGTGTGTTACATCACCACTCGCCGAGGAAAGCGTGATTATGTCAGTGTGTGAGATGCAGCAGATGATCTATGGGGGAGGGAGACACTCAAAACGCTTTCTAACCGGAGGAGGGGCTTTAATTCATCTGTAAAGGAGAAAGGTGAGGATGGTTGTAAGGATCTGATGGAGGCGTTTGCTGCCTGTGTGAAGAGCAATGCTGAGGCATCATGAGGAGCTCAACATGCAGGAAAAGGGTTAACTGCACTGAGTCCTCCACCTTCCCAGCATTCCCTGCAGCTCATGGCACTGGACTAAATGATGGGGTTTGGCTGCAGAGACCATTCTTGTGTCTCTTCCCTTCTCCACCCCTCCTGTGAAGCTTAAATGGATTCCTTCTACCACCAACCTTCCCTCCCCTTTTTGTGGCTGATTGTATTGATCTGATTTGTAGATCGTTCGGAGCTCATGAATTGATGTAAATGATGTGTCTCAGATGCTTACAAAATggaataaagattttaaaatggtCCAATGTGT
>TCONS_00053061
CAACTACAGGAGCGCACAGAGCACAGGCACGCATACACACCAACGCCATAGACCATGTCGGACTCAGAGACTGCAGCTCCTGCCGAAACCCCTGTCCCAGCAGCCTGTGTGGCCATCAAAGCAGATTTAGACAAATGGAGAAAGGTGAGGATGGTTGTAAGGATCTGATGGAGGCGTTTGCTGCCTGTGTGAAGAGCAATGCTGAGGCATCATGAGGAGCTCAACATGCAGGAAAAGGGTTAACTGCACTGAGTCCTCCACCTTCCCAGCATTCCCTGCAGCTCATGGCACTGGACTAAATGATGGGGTTTGGCTGCAGAGACCATTCTTGTGTCTCTTCCCTTCTCCACCCCTCCTGTGAAGCTTAAATGGATTCCTTCTACCACCAACCTTCCCTCCCCTTTTTGTGGCTGATTGTATTGATCTGATTTGTAGATCGTTCGGAGCTCATGAATTGATGTAAATGATGTGTCTCAGATGCTTACAAAATggaataaagattttaaaatggtCCAATGTGT
>TCONS_00051595
CGCGGTTTTTGGGCGGTTCTCCTCCCTCAAGGCTCCTGGAGAAGGGGGCGTGGATCACTATTTGGTAACTACGCGTCCCACTTCACTTTCCAGTTAACTCTTACTTGAGCCTTCCGGTGTGCAGACAAAGGAGCGCACAGAGCACAGGCACGCATACACACCAACGCCATAGACCATGTCGGACTCAGAGACTGCAGCTCCTGCCGAAACCCCTGTCCCAGCAGCCTGTGTGGCCATCAAAGCAGATTTAGACAAATGTGTAAAGGAGAAAGGTGAGGATGGTTGTAAGGATCTGATGGAGGCGTTTGCTGCCTGTGTGAAGAGCAATGCTGAGGCATCATGAGGAGCTCAACATGCAGGAAAAGGGTTAACTGCACTGAGTCCTCCACCTTCCCAGCATTCCCTGCAGCTCATGGCACTGGACTAAATGATGGGGTTTGGCTGCAGAGACCATTCTTGTGTCTCTTCCCTTCTCCACCCCTCCTGTGAAGCTTAAATGGATTCCTTCTACCACCAACCTTCCCTCCCCTTTTTGTGGCTGATTGTATTGATCTGATTTGTAGATCGTTCGGAGCTCATGAATTGATGTAAATGATGTGTCTCAGATGCTTACAAAATggaataaagattttaaaatggtCCAATGTGT
>TCONS_00051596
ACTAACTCTTCATTCTCTCTGTTTCTCTTGCACATGCAACTACAGGAGCGCACAGAGCACAGGCACGCATACACACCAACGCCATAGACCATGTCGGACTCAGAGACTGCAGCTCCTGCCGAAACCCCTGTCCCAGCAGCCTGTGTGGCCATCAAAGCAGATTTAGACAAATGTGTAAAGGAGAAAGGTGAGGATGGTTGTAAGGATCTGATGGAGGCGTTTGCTGCCTGTGTGAAGAGCAATGCTGAGGCATCATGAGGAGCTCAACATGCAGGAAAAGGGTTAACTGCACTGAGTCCTCCACCTTCCCAGCATTCCCTGCAGCTCATGGCACTGGACTAAATGATGGGGTTTGGCTGCAGAGACCATTCTTGTGTCTCTTCCCTTCTCCACCCCTCCTGTGAAGCTTAAATGGATTCCTTCTACCACCAACCTTCCCTCCCCTTTTTGTGGCTGATTGTATTGATCTGATTTGTAGATCGTTCGGAGCTCATGAATTGATGTAAATGATGTGTCTCAGATGCTTACAAAATggaataaagattttaaaatg
>TCONS_00051597
GGGTCCGCGGTTTTTGGGCGGTTCTCCTCCCTCAAGGCTCCTGGAGAAGGGGGCGTGGATCACTATTTGGAGCGCACAGAGCACAGGCACGCATACACACCAACGCCATAGACCATGTCGGACTCAGAGACTGCAGCTCCTGCCGAAACCCCTGTCCCAGCAGCCTGTGTGGCCATCAAAGCAGATTTAGACAAATGTGTAAAGGAGAAAGGTGAGGATGGTTGTAAGGATCTGATGGAGGCGTTTGCTGCCTGTGTGAAGAGCAATGCTGAGGCATCATGAGGAGCTCAACATGCAGGAAAAGGGTTAACTGCACTGAGTCCTCCACCTTCCCAGCATTCCCTGCAGCTCATGGCACTGGACTAAATGATGGGGTTTGGCTGCAGAGACCATTCTTGTGTCTCTTCCCTTCTCCACCCCTCCTGTGAAGCTTAAATGGATTCCTTCTACCACCAACCTTCCCTCCCCTTTTTGTGGCTGATTGTATTGATCTGATTTGTAGATCGTTCGGAGCTCATGAATTGATGTAAATGATGTGTCTCAGATGCTTACAAAATggaataaagattttaaaatg

Function

GO:

id name namespace
GO:0010880 regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum biological_process
GO:0014808 release of sequestered calcium ion into cytosol by sarcoplasmic reticulum biological_process
GO:0014809 regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0014819 regulation of skeletal muscle contraction biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0070296 sarcoplasmic reticulum calcium ion transport biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0045214 sarcomere organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:1903514 release of sequestered calcium ion into cytosol by endoplasmic reticulum biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0044057 regulation of system process biological_process
GO:0014722 regulation of skeletal muscle contraction by calcium ion signaling biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-131121-428 Predicted to enable copper chaperone activity and copper ion binding activity. Predicted to be located in mitochondrial intermembrane space.

Ensembl:

ensembl_id ENSDARG00000096849

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053060 False 414 lncRNA 0.46 3 32325134 32329103
TCONS_00051598 False 542 lncRNA 0.46 3 32325134 32329260
TCONS_00053061 False 521 lncRNA 0.49 3 32325134 32334302
TCONS_00051595 False 649 lncRNA 0.49 4 32325134 32337690
TCONS_00051596 False 553 lncRNA 0.48 3 32325145 32334338
TCONS_00051597 True 577 mRNA 0.50 4 32325145 32337695

Neighbor

gene id symbol gene type direction distance location
XLOC_026476 si:dkey-16p21.7 coding downstream 4591 32294745 ~ 32320543 (-)
XLOC_026475 cpt1cb coding downstream 35038 32228901 ~ 32290096 (-)
XLOC_026474 NA coding downstream 103049 32185899 ~ 32222085 (-)
XLOC_026473 pih1d1 coding downstream 144301 32172534 ~ 32180833 (-)
XLOC_026472 tnnt1 coding downstream 154256 32157140 ~ 32170878 (-)
XLOC_026478 prmt1 coding upstream 19138 32356833 ~ 32363021 (-)
XLOC_026479 si:ch211-195b15.7 coding upstream 121025 32458720 ~ 32472155 (-)
XLOC_026480 rcn3 coding upstream 198291 32535986 ~ 32541072 (-)
XLOC_026481 NA coding upstream 227499 32565194 ~ 32572052 (-)
XLOC_026482 tspan4b coding upstream 249315 32587010 ~ 32596394 (-)
XLOC_026469 NA non-coding downstream 367768 31935697 ~ 31957366 (-)
XLOC_026460 NA non-coding downstream 674423 31650253 ~ 31650711 (-)
XLOC_026457 NA non-coding downstream 724852 31511470 ~ 31600282 (-)
XLOC_026453 NA non-coding downstream 1147925 31174133 ~ 31177209 (-)
XLOC_026483 NA non-coding upstream 260949 32598644 ~ 32603191 (-)
XLOC_026499 NA non-coding upstream 962499 33300194 ~ 33304123 (-)
XLOC_026500 CABZ01012959.1 non-coding upstream 1006381 33344076 ~ 33345247 (-)
XLOC_026505 CR396582.3 non-coding upstream 1086497 33424192 ~ 33424328 (-)

Expression


Co-expression Network