G753280 (LOC106569576)


Basic Information

Item Value
gene id G753280
gene name LOC106569576
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 81618025 ~ 81619734 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU855380
CACACAAGCAAACTCTGAGCTTTAATTTATATTCATACTGCTTTTCCAGAAATATAAATGATGTTACTAGGCATGCATTGTCCCATTCAGGAACACATTGTGGAATCTGCAAATAAATTATTTTAGCTAGAAAACATCCCTTCAGTTGTAGCAAGCAAACATTGAAAttacacactgtactgtatatcacctTTATTAATTTGAGCTATACCAACAATTTTTATCCATCACTCTTTATTAAGAACTAAACAATCCTGATCCCTCAATGTTCAGAGTACCACAATCTTCTCATTCAGGGCGATCTGTGCTTGAGTCAGATTAGATAGATAGGTCACCATCAACAGGTCGTTGATGTTGGAGTTGAGCATGGTCTCAAAGTCCTCTGCTGTGATCTTAGGAACCTTGTTGACCAGATCCATCAGGTACCGTCCAACACTGTTATCTGCCATCTGCTTACCAGACAACACATCCTCAATGTAGGTCAGTACCGTGGCCAGCATGTCCTGAACGCGGCCTGCTGCCCCGCCCACCtggcagaggtcagaggtcagcccATTGGTGGTGTTAGGAGCATCTCTCGTCCTCTGGAGAAGGTCTCCTATCCTCTCTGTGTCGTAATACTTGTATTTCACACTCAGGGGAGTGAACATCACACCGACAGTCTTTCCCGGCACACCCATCTGGGCAGACGTAGGCACGGATGTTCATCTTGCCACTCTGCAGGGCGGTGTCCATGGTGAGGTGAATGGGGTTCGTGGCCTCTCGGCTGTAGTACTCATGGATCAACACAGAGTGCTCAGTGATCTCAAAGCCTGTGGCATACCTGTTGAAGGAGAATGGGTTGACT

Function

NR:

description
eukaryotic translation initiation factor 3 subunit F-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU855380 True 847 lncRNA 0.46 5 81618025 81619734

Neighbor

gene id symbol gene type direction distance location
LOC110530755 LOC106569585 coding upstream 176297 81418372 ~ 81444081 (+)
LOC110529142 NA coding upstream 199703 81417140 ~ 81418322 (+)
LOC118965638 NA coding upstream 252256 81356959 ~ 81365769 (+)
LOC110530754 NA coding upstream 417604 81196167 ~ 81200421 (+)
LOC110530753 LOC106600601 coding upstream 428868 81076665 ~ 81189157 (+)
LOC110530757 LOC106569574 coding downstream 1400 81621134 ~ 81632686 (+)
dnaaf6 LOC106569578 coding downstream 13651 81633385 ~ 81636491 (+)
LOC110530761 LOC106569577 coding downstream 16935 81636669 ~ 81665274 (+)
lig1 lig1 coding downstream 46912 81666646 ~ 81692412 (+)
mpz myp0 coding downstream 91433 81711167 ~ 81743458 (+)
G753256 NA non-coding upstream 39589 81578231 ~ 81578436 (+)
G753252 NA non-coding upstream 53021 81564758 ~ 81565004 (+)
G753219 NA non-coding upstream 108492 81509291 ~ 81509533 (+)
G753217 NA non-coding upstream 113022 81504749 ~ 81505003 (+)
G753216 NA non-coding upstream 113549 81504112 ~ 81504476 (+)
G753305 NA non-coding downstream 71212 81690946 ~ 81691368 (+)
G753319 NA non-coding downstream 93913 81713647 ~ 81715051 (+)
G753321 NA non-coding downstream 100697 81720431 ~ 81725384 (+)
G753322 NA non-coding downstream 106745 81726479 ~ 81730576 (+)
G753327 NA non-coding downstream 112041 81731775 ~ 81820622 (+)
G753205 LOC106569572 other upstream 130415 81486820 ~ 81487610 (+)
G752398 NA other upstream 876080 80741604 ~ 80741945 (+)
G752357 NA other upstream 983973 80631310 ~ 80634052 (+)
LOC110530726 LOC106600567 other upstream 2048148 79548127 ~ 79579010 (+)
ncana LOC106569686 other upstream 2270577 79210727 ~ 79347454 (+)
sdhc LOC106569582 other downstream 163615 81783282 ~ 81802285 (+)
G753337 NA other downstream 302428 81922162 ~ 81931491 (+)
G754927 NA other downstream 1636005 83255739 ~ 83257866 (+)
G755286 NA other downstream 2009638 83629372 ~ 83629738 (+)
G755277 NA other downstream 2033311 83653045 ~ 83654438 (+)

Expression


Co-expression Network