XLOC_026479 (si:ch211-195b15.7)


Basic Information

Item Value
gene id XLOC_026479
gene name si:ch211-195b15.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32458720 ~ 32472155 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051601
ACACAGCCTACACTCAGTAAAAAGTATTGTTTGCAGGGAAACCCAAGGgaaaacctttatttaaaaaaaaacagcttttaacaCCACAGAGGGAATGACTGTGGATGTGGAGAagattattcagttcatcaaacAAGGCGACCAAGACAATGTTCAAAGTCATCTGGATGATTACAACACTGAGAACTCACAATGCTTCTTTTTTGATGTGGAAGAAAGGGAGAGAAAAAAGCAAAGAGAGCTGGAAGAGTTCCGCAGGAATAAAGTGAGAGAGTACGTTCCAGACTCTGACTCAGACTGTGACTCTGATAACAGTGAGGATCCAGACCTTGTTCTGCGGAGAAGGCTCGCTGCGGCTCTGATCTGGTTTATTCGCATGCGCCTGCAGCCGGGCGTTTTGAGAGTGTGTCTGCGAACTCTGAGGATCATCTCACGGGACCGAAAGGCTCTGGCACCCCTGATTACAGACTATGCCATCATAACTCTCGCTCGGCTCGGGGGCATCTCTGCCCTGCCAACCTGGCCTGAGGAAGAGGATGATCAGTGGGGCTCCTCACACAACGACGTCGCTCCTGAGAACGAGACTGACACACTTCCAGATAATGACACCAACACCCAATGTCCAGCATGTTGCAGTGAGACAGATGATTCATGTTGTGGCTCTACAGTCTGCGCTGCGTCTTCGGTCAGAGAAGGAGGTCTGCACTTCAGCCCTATGAATAATACATCTAATCCCAGAGAAACACAAAACGACCACTGTGAAGAAAGTGTAAGGAAAGATGGAGTGTGTGGGCTGTTGACAAGAGGAAAGAGGGAGACCAGAGGAGAGAGGGATGAGGAGGGTGAGGAAGGACATGATGATGGTGAGATCTGGAGGAAAGAGGCGATGAAAACCCTGTGCAATGTCATCTACAACAGCCCGAAAGCACAAGAGAGAGCCAGCACACTGAGGTTACTTCATGGCCTATCAGTGAGAATTAAAGATGGGATACATTCCTCATCACCTCCAAGCGGTCAATTTTATGAACTgcggcttctgtttttgttgacTGCTTTACGGCCTGAGCTCAGGATTGAACTCTGCCAGGAGCGTGGTGTGTCCATGCTGACCGCAGCTCTGGAACAGTGTTTAGACGTGATCTGGGGTGAAACACACGAAGTGCTGACTGACCTGACAGCTCCACCTTTGTGTAAGGAACTTTCTCAGCGAGCCCTGGAGATCCTGAAGACCCTGTTCAACATCACCTACAGTGTGCACAGACAGGACCTAGACGAGGAGGCTGCAGCTTTGTACCGTCGCCTAGCTGCAGTCCTGCGTCACTGCCTGCTCGTGCCCTGTGAGGGAGAGGACAGAAAAGAGGAGCTGCAAGGACACACAGTGAATGTGCTCTCAGCGCTCCCTCTGCAGTGCCTGGATGTCCTGCTTTCTGTTCGCCTGTCTGAAGGTTCAGAGGAGTCTGGTGGTGTCAACATGGACTGTGTCCACACTTTGCTGCTCTTCATGGAGAAAAGACTGGACAGAGGCCACAAGCTGAAGGAAAAGCTTACTCCAGTGTTAAACCTGTTGACAGAAAGCAGCAAAGCACACAGGGAAACCAGGCACTATCTCCGGCAGCAGATCCTGCCTCCACTGAGAGACGTTGAGCTGAGGCCTGAGCAGGGGAACACACTGAGAAGCAGACTAGTGAGACTAATGACCCATGTCGACACTGATATCAAGCACTGTGCAGCTGAGCTTCTCTTTGTGCTATGCAAAGAAAATGTGAGCAGGTTTGTGAAGTACACTGGTTACGGTAATGCAGCTGGACTGTTGGCAGCACGGGGTCTTTTGAACGGCCGTGGCTCTTCTCCTCAACCACAGTACTCCAGTGACTCTGACTCAGACACGGAGGAGTACAGACAGGCCCGGGACAGGATTAACCCTGTAACGGGACGGGTGGAGGAGGAACAGCCTGATCCAATGGAAGGGATGACTGAAGAAGAGAAAGAGGCAGAGGCGCTCAGACTCATAAATATGTTCAACAGGCTGTCAcgGGGCAAGATCATTCAGCCGATGGGAGTGACCACTGACGGCAAACTAGCGCCGCTGTGTGGCCAGACGAGACACAGCGCtgtgcaggaggaggaggaggaagatgagGAAGATGATGATTGTAGTGAGACAGAGCAGTAAGGAAGGAGTGGATGTCAAGATGATGATTAATAAGAGGCAAGATATTTTATACTCATAACAAATATAGTGACAAAACATGATAGTGGAGCAAACTATATCTTATGAAAATGTTCAGAATATGTAATGTGAAAAAATGAAGCTCTCTATGATGCGATTAAAATAAGGATAAAAGTAATTTATATTATAGCAGAGAAtgtgatttatttgttattactCATAAGCTAGAAACAGTCAATTAGGAAGCTACTCAAAagcaaaggagaaagaaagagacaAAGAGCGAAATGGGCATCACACCAAAGACAGACAAACACTCCTGGAAAATGCTGCTGCTGTTGCCATGGTAATGTTACCATGGTAACAACAGGAAATGCAGTTCTAcggcttctttttttttccctggCGCTCCAGCAGGAGTGGAATGTTTACCTTGAAGAACTGCTGAGGCTGGTCTGACACTCTTGAATGCTGGCACCCTACACCGAGAATCATGAAAAATCATGAAAATAATGTCATTATTCAACTCCTCAGAGAAACGCTTTCATTTGCAGAGTGATTAGTCAGCACTGGGAACTTTTGAACATGATTACAGTGTTCAGAGCAGGTTGCTTGGCTGTACTGCTTGATTTCCAGTGCATTCtctccattcatacacatcttaAATGCAAAATAGCAGCTTGTACACtaagaacaaataaacaataaagaaaGATCCAAGGCA
>TCONS_00051602
ATTATATAGGCACTTGAAACTGctgtgttaatgtatttattgtatCTCCAAGCGATAGAGTTTTATCTTTTCTCCACTCCATTCTGCAAAATGTCCTTCTTTTTTGGAACAGAAAAGACCTTTATGTGAGAAACACCTTACTGTGACATCTAAAACACTGCTGTCTGTTTGAAATTCTTGATCTCGTCCTCTCCCAGTGAGCAGGTTTGTGAAGTACACTGGTTACGGTAATGCAGCTGGACTGTTGGCAGCACGGGGTCTTTTGAACGGCCGTGGCTCTTCTCCTCAACCACAGTACTCCAGTGACTCTGACTCAGACACGGAGGAGTACAGACAGGCCCGGGACAGGATTAACCCTGTAACGGGACGGGTGGAGGAGGAACAGCCTGATCCAATGGAAGGGATGACTGAAGAAGAGAAAGAGGCAGAGGCGCTCAGACTCATAAATATGTTCAACAGGCTGTCAcgGGGCAAGATCATTCAGCCGATGGGAGTGACCACTGACGGCAAACTAGCGCCGCTGTGTGGCCAGACGAGACACAGCGCtgtgcaggaggaggaggaggaagatgagGAAGATGATGATTGTAGTGAGACAGAGCAGTAAGGAAGGAGTGGATGTCAAGATGATGATTAATAAGAGGCAAGATATTTTATACTCATAACAAATATAGTGACAAAACATGATAGTGGAGCAAACTATATCTTATGAAAATGTTCAGAATATGTAATGTGAAAAAATGAAGCTCTCTATGATGCGATTAAAATAAGGATAAAAGTAATTTATATTATAGCAGAGAAtgtgatttatttgttattactCATAAGCTAGAAACAGTCAATTAGGAAGCTACTCAAAagcaaa

Function

symbol description
si:ch211-195b15.7 Predicted to enable G-protein alpha-subunit binding activity and guanyl-nucleotide exchange factor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Located in cytoplasm.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0005096 GTPase activator activity molecular_function
GO:0001965 G-protein alpha-subunit binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-183 Predicted to enable G-protein alpha-subunit binding activity and guanyl-nucleotide exchange factor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Located in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000017579

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051601 False 2894 mRNA 0.47 14 32458720 32472155
TCONS_00051602 True 865 lncRNA 0.43 2 32459183 32460973

Neighbor

gene id symbol gene type direction distance location
XLOC_026478 prmt1 coding downstream 95699 32356833 ~ 32363021 (-)
XLOC_026477 NA coding downstream 121025 32325134 ~ 32337695 (-)
XLOC_026476 si:dkey-16p21.7 coding downstream 138177 32294745 ~ 32320543 (-)
XLOC_026475 cpt1cb coding downstream 168624 32228901 ~ 32290096 (-)
XLOC_026474 NA coding downstream 236635 32185899 ~ 32222085 (-)
XLOC_026480 rcn3 coding upstream 63831 32535986 ~ 32541072 (-)
XLOC_026481 NA coding upstream 93039 32565194 ~ 32572052 (-)
XLOC_026482 tspan4b coding upstream 114855 32587010 ~ 32596394 (-)
XLOC_026483 NA coding upstream 126489 32598644 ~ 32603191 (-)
XLOC_026484 CU459155.1 coding upstream 131101 32603256 ~ 32637678 (-)
XLOC_026469 NA non-coding downstream 501354 31935697 ~ 31957366 (-)
XLOC_026460 NA non-coding downstream 808009 31650253 ~ 31650711 (-)
XLOC_026457 NA non-coding downstream 858438 31511470 ~ 31600282 (-)
XLOC_026499 NA non-coding upstream 828039 33300194 ~ 33304123 (-)
XLOC_026500 CABZ01012959.1 non-coding upstream 871921 33344076 ~ 33345247 (-)
XLOC_026505 CR396582.3 non-coding upstream 952037 33424192 ~ 33424328 (-)

Expression


Co-expression Network