XLOC_026480 (rcn3)


Basic Information

Item Value
gene id XLOC_026480
gene name rcn3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32535986 ~ 32541072 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051603
AAGTTAAGATTGAGTGTACTCAAGCTGAAATCACTGCTGGCTTGTGAGAATATGCAGCTGCTCTTTCTGGGGACACTTGCCCTGTTTGCTGGGCTCTCGGTTGCGGTGCCAGCACAGGAGAAGCGTATACATCATAAGCTAGACCTCAGTGACCATCCTCACGATGATGCCCACGGTTTCCAGTTTGACCACGAGGCCTTCCTGGGGAAAGAGGAATCCAAGACCTTTGACCAGCTGAGCCCTGAGGAGAGCAAAGACAGATTAGGAAAGATTGTGGATAAGATTGACACAGATAAGGATGGCTTCGTCAGTCATGCTGAGTTACACCACTGGATCAAGCACAGGCAGAGGAGGTACATCGAGGAGAACGTGGACAAGCACTGGAATGAGTACGACCAGAATAAGGATGGGAAGATCGGATGGATTGAGTACAAGAACACCACCTATGGATATTATATAGACACAGAGTTTGATGATGTGGATGATAAAGCCACCTACAAATCCATGCTTAATAGAGATGAGAGGCGGTTTAAGTCTGCAGACAGGGATGGGGATGGTGTCGCCACCAGAGAAGAGTTCACTGCCTTCCTCCATCCAGAAGAGTTTGACTTTATGAGAGACATTGTGATTCAGGAAACAATTGAAGACATTGACAAGAATGGGGACGGCAAGATTGATCTGCAGGAATACATTGGGGACATGTACAATCCTGAAGATGGAGAGACTGAACCAGACTGGGTCACAACAGAAAAGAAACAATTTTCAGAGTTCAGAGACATGAACAAGGATGGTTTCCTTGATGCCACTGAAGTATCGCACTGGATCCTCCCGACAGAAGTTGACCATGCTGATAATGAAGCCCGGCATCTCATTCATGAAACCGATAAAGACAACGATGGTCGTCTTTCTATCAATGAGATCATGGATAAACTGGATTTCATTAAAGTCAGCACTATTACTGACTATGGGACCCTGATAGAAGTTCATGATGAACTTTAACCCTATTATTAACACAGAAACATGAATGTatctttaaactaataaaataagacAAGTGTCACTTTTAAAGTGTGTAAAATGAAAGatttattgaacaaaaaaaaatcaactacATAATGTGTACATATGACATGATAACTTCTTTACAGGCATGGAAAAAAATACCATTCAAAAATGATCCCTTATTAAAGAAATAACAACAAATGACCTAAAATAAATccaggagaatgaatgaatgataatatttACAGCATCACAGCGTTGTCCAATCCTCACATTTATGCTTGCATTACGGGTCTGGCCTCTTTAGCTTTGAGGTCCACTCCTGAGCCCGCGAAGCCAGTCCCACCCTGCCGAAGAACAAATGCAGTGCTGTTAGTGAGTTTACActcagaaaatatatatttttacacagctTGTCaagacatatataaataaatacatatttaaaaagt
>TCONS_00051604
ACGTGCACTTTTAAAGAACAGTGCCAACGCGTACTCTTCAAGTTAAGATTGAGTGTACTCAAGCTGAAATCACTGCTGGCTTGTGAGAATATGCAGCTGCTCTTTCTGGGGACACTTGCCCTGTTTGCTGGGCTCTCGGTTGCGGTGCCAGCACAGGAGAAGCGTATACATCATAAGCTAGACCTCAGTGACCATCCTCACGATGATGCCCACGGTTTCCAGTTTGACCACGAGGCCTTCCTGGGGAAAGAGGAATCCAAGACCTTTGACCAGCTGAGCCCTGAGGAGAGCAAAGACAGATTAGGAAAGATTGTGGATAAGATTGACACAGATAAGGATGGCTTCGTCAGTCATGCTGAGTTACACCACTGGATCAAGCACAGGCAGAGGAGGTACATCGAGGAGAACGTGGACAAGCACTGGAATGAGTACGACCAGAATAAGGATGGGAAGATCGGATGGATTGAGTACAAGAACACCACCTATGGATATTATATAGACACAGAGTTTGATGATGTGGATGATAAAGCCACCTACAAATCCATGCTTAATAGAGATGAGAGGCGGTTTAAGTCTGCAGACAGGGATGGGGATGGTGTCGCCACCAGAGAAGAGTTCACTGCCTTCCTCCATCCAGAAGAGTTTGACTTTATGAGAGACATTGTGATTCAGGAAACAATTGAAGACATTGACAAGAATGGGGACGGCAAGATTGATCTGCAGGAATACATTGGGGACATGTACAATCCTGAAGATGGAGAGACTGAACCAGACTGGGTCACAACAGAAAAGAAACAATTTTCAGAGTTCAGAGACATGAACAAGGATGGTTTCCTTGATGCCACTGAAGTATCGCACTGGATCCTCCCGACAGAAGTTGACCATGCTGATAATGAAGCCCGGCATCTCATTCATGAAACCGATAAAGACAACGATGACAAAATCACAAAGAAGGAGATTCTGGAAAACTGGAACATGTTTGTTGGGAGCCAAGCGACTAATTACGGAGAGGATCTCACCAAAAGACACGATGAGCTTTAATGTTGGCATATCTGGGTAGAGGGGAGGACAGTATATTTTGGGCGTAGGTCAGAGGATAGAAAATTGAATAAGAAAATGACAGACAATCTTCGTTACCTGCTGTTTTGAAACATTTCCAGGGTCCTCAGTCAAGGGTTAGACTTTTCGGTCAATGAAGATAAGAATCTAACTGAGacagatacaagttttatttattgtcatttagaTAAAAAGGTGATTACACATGGGACCTTTTGAGCAATGCTTCTGAGCAACATTGAAGATTACTTTTCTATTGAAAATGGGAAACAAAACAATATCTGAAATGGATTCTGTTGCTGGGTCTCACCTGGTTTCCCATTGGTGGCATCATTATCCGTACCATTGCTTTAAAACTTGTCCTTTGTATCATGACATAAACACTCGCATTCCTTATAAAAAGACACTCCAGCTTGCTTATACTGCTTGAGCAAACAATATTACGTCTTCCACTTCTCAGGAATTCAGCACTGAATACAGGTCCAGCTTCGTTTGTATTCAATTAGGGAGATTTTGACtgttacaaaa

Function

symbol description
rcn3 Predicted to enable calcium ion binding activity. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including epidermis; head mesenchyme; hypochord; mesoderm; and pectoral fin. Orthologous to human RCN3 (reticulocalbin 3).

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-040625-175 Predicted to enable calcium ion binding activity. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including epidermis; head mesenchyme; hypochord; mesoderm; and pectoral fin. Orthologous to human RCN3 (reticulocalbin 3).

Ensembl:

ensembl_id ENSDARG00000037961

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051603 False 1454 mRNA 0.42 8 32535986 32541033
TCONS_00051604 True 1587 mRNA 0.43 8 32536919 32541072

Neighbor

gene id symbol gene type direction distance location
XLOC_026479 si:ch211-195b15.7 coding downstream 63831 32458720 ~ 32472155 (-)
XLOC_026478 prmt1 coding downstream 172965 32356833 ~ 32363021 (-)
XLOC_026477 NA coding downstream 198291 32325134 ~ 32337695 (-)
XLOC_026476 si:dkey-16p21.7 coding downstream 215443 32294745 ~ 32320543 (-)
XLOC_026475 cpt1cb coding downstream 245890 32228901 ~ 32290096 (-)
XLOC_026481 NA coding upstream 24122 32565194 ~ 32572052 (-)
XLOC_026482 tspan4b coding upstream 45938 32587010 ~ 32596394 (-)
XLOC_026483 NA coding upstream 57572 32598644 ~ 32603191 (-)
XLOC_026484 CU459155.1 coding upstream 62184 32603256 ~ 32637678 (-)
XLOC_026485 si:ch73-248e21.5 coding upstream 66708 32607780 ~ 32611833 (-)
XLOC_026474 NA non-coding downstream 313901 32185899 ~ 32222085 (-)
XLOC_026469 NA non-coding downstream 578620 31935697 ~ 31957366 (-)
XLOC_026460 NA non-coding downstream 885275 31650253 ~ 31650711 (-)
XLOC_026457 NA non-coding downstream 935704 31511470 ~ 31600282 (-)
XLOC_026499 NA non-coding upstream 759122 33300194 ~ 33304123 (-)
XLOC_026500 CABZ01012959.1 non-coding upstream 803004 33344076 ~ 33345247 (-)
XLOC_026505 CR396582.3 non-coding upstream 883120 33424192 ~ 33424328 (-)

Expression


Co-expression Network