XLOC_026482 (tspan4b)


Basic Information

Item Value
gene id XLOC_026482
gene name tspan4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32587010 ~ 32596394 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051606
GATAGAAACGATAGAATGCCAAAGAGAACCAGGAATTAGCAATTAAGACTAAGAGAAGAGACTAAAACCCAAACAAATACTCTGATTTTGTTTgtgttaccaaaaaaaataaatatattggaaCTTCAAGAGGATTCCAGAAGATAAATGACAGGAGTCTGAATGAATTatacaacaaagaaaaaaagtttgtgaAGAATTTTGTATCCCACGAAAACTCCAAGACTGATATTTCATCACTTCAAAGAAGgctttatgttttttttgcacCTTATGAAGACTTAACAACTACTAAAAGAACTGGAGGAATCACGTCTGTGATGGGGATGATAATGTCGATGAAGAAATAAAGCAAGATCTCATGAAATTTAtcagaacaaaacaacaaactgaCAATACCGGAAGCTTTGCATTCAGGACTAAGTGAAAACTCAACTCGGGAAGGTTTTTTGAATTGCCTGTCAGTCATTTTATCGGTCTCCATCTAAATCAAGAATGTCTGTCTCACGAGGTTGCCTCTGCTGCGTGAAGTACCTCATGTTTGTCTTCAACCTCATCTTTTGGTTAGGAGGATGTGGTTTATTTGGTGTTGGAGTTTGGCTCGCCTTCACACAATCAGAGTTTTCATCTCTACCACTGTCCTTCCCTTCACTCTCTGCTGCCAACCTACTGCTCATTGCTGGGGGCGTTACCATGGTGACAGGATTTCTGGGATGCCTCGGTGCTCTAAAAGAGCAAAAGTGTCTGTTGTTGACGTTTTTTGTGATCCTCTTGATTCTAGTCCTGACAGAAGTTGTGCTGATTTTGGTTTTGAGTTTATATCACGAAGAGCTGGACAAAAAAGCCAAGGATGACCTAAGAGAAGGAATGAAAGGCTACAGCAAAAATGACGGACTGCGGAAATCCTGGGATAACATGCAGATGATTTTCAAGTGCTGTGGCGTGAGCAACCACACCGACTGGCACAACAAAACAACCGATGGCAAACTCCCTGGGTCCTGCTGCAGTAACGATCCTTCAAGCTGTCGTCACTGGGAAGAGCCATGCTATGAGAAAGCCAAGCAGTGGCTCCTGACTAACATCACCTCAGTGCTTGGTTTTGGAGTTTGCATTGGAATCGTCCAGCTTCTTGCTTTGGTGTTCTCCATGCTGATGTACTGCCAGATCCTCAGAGCAGAAAAATACATGGACTGACCCCTGCTGATGAAAAAAATCAATTCTGAATGTTTAAGTGGACTTACTAGAGAACTGGCCTATTAGAGAAACTGGGCAAGATATGCACATTAACATAAGTTAGAGTGCTGCACTTAGGAAAATGAacctttaccaaaaaaaaaagagaggctAAAGAATTTATTTGTACTAATGAAGATCACATGAACATAAATTGAATGTATACTTTAGGTAGAAAATGAGGTAAATCCTAGTATTATTGCACTCTTTGTTAAATACCCTTTGTAACTGCTCACAGTGAACTTGCAATCAAAGTAAATTTCCAGTACATGTTTAAAATATGATGATTTGTTATATTAAACCCGTTACATGtatattattaa
>TCONS_00051607
agaaaatgtttatttgaaattgtAAGTTAAAGGCAGCTTAGAGGAGCATGTGAGTTTTTTCAGAATTATTGACAAAGTTTTGAATGTTTTTTGTGATCCTCTTGATTCTAGTCCTGACAGAAGTTGTGCTGATTTTGGTTTTGAGTTTATATCACGAAGAGCTGGACAAAAAAGCCAAGGATGACCTAAGAGAAGGAATGAAAGGCTACAGCAAAAATGACGGACTGCGGAAATCCTGGGATAACATGCAGATGATTTTCAAGTGCTGTGGCGTGAGCAACCACACCGACTGGCACAACAAAACAACCGATGGCAAACTCCCTGGGTCCTGCTGCAGTAACGATCCTTCAAGCTGTCGTCACTGGGAAGAGCCATGCTATGAGAAAGCCAAGCAGTGGCTCCTGACTAACATCACCTCAGTGCTTGGTTTTGGAGTTTGCATTGGAATCGTCCAGCTTCTTGCTTTGGTGTTCTCCATGCTGATGTACTGCCAGATCCTCAGAGCAGAAAAATACATGGACTGACCCCTGCTGATGAAAAAAATCAATTCTGAATGTTTAAGTGGACTTACTAGAGAACTGGCCTATTAGAGAAACTGGGCAAGATATGCACATTAACATAAGTTAGAGTGCTGCACTTAGGAAAATGAacctttaccaaaaaaaaaagagaggctAAAGAATTTATTTGTACTAATGAAGATCACATGAACATAAATTGAATGTATACTTTAGGTAGAAAATGAGGTAAATCCTAGTATTATTGCACTCTTTGTTAAATACCCTTTGTAACTGCTCACAGTGAACTTGCAATCAAAGTAAATTTCCAGTACATGTTTAAAATATGATGATTTGTTATATTAAACCCGTTACATGtatattat

Function

symbol description
tspan4b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-127 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000070391

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051606 False 1556 mRNA 0.39 8 32587010 32596394
TCONS_00051607 True 883 mRNA 0.39 6 32587013 32590164

Neighbor

gene id symbol gene type direction distance location
XLOC_026481 NA coding downstream 14958 32565194 ~ 32572052 (-)
XLOC_026480 rcn3 coding downstream 45938 32535986 ~ 32541072 (-)
XLOC_026479 si:ch211-195b15.7 coding downstream 114855 32458720 ~ 32472155 (-)
XLOC_026478 prmt1 coding downstream 223989 32356833 ~ 32363021 (-)
XLOC_026477 NA coding downstream 249315 32325134 ~ 32337695 (-)
XLOC_026483 NA coding upstream 2250 32598644 ~ 32603191 (-)
XLOC_026484 CU459155.1 coding upstream 6862 32603256 ~ 32637678 (-)
XLOC_026485 si:ch73-248e21.5 coding upstream 11386 32607780 ~ 32611833 (-)
XLOC_026486 mylpfa coding upstream 216654 32813048 ~ 32818607 (-)
XLOC_026487 zgc:153733 coding upstream 224811 32821205 ~ 32831971 (-)
XLOC_026474 NA non-coding downstream 364925 32185899 ~ 32222085 (-)
XLOC_026469 NA non-coding downstream 629644 31935697 ~ 31957366 (-)
XLOC_026460 NA non-coding downstream 936299 31650253 ~ 31650711 (-)
XLOC_026499 NA non-coding upstream 703800 33300194 ~ 33304123 (-)
XLOC_026500 CABZ01012959.1 non-coding upstream 747682 33344076 ~ 33345247 (-)
XLOC_026505 CR396582.3 non-coding upstream 827798 33424192 ~ 33424328 (-)
XLOC_026509 CU695077.1 non-coding upstream 1085124 33681518 ~ 33690754 (-)

Expression


Co-expression Network