XLOC_026483


Basic Information

Item Value
gene id XLOC_026483
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32598644 ~ 32603191 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051608
agaCGCTGTTCACAGCTTCCCATTACAGCCGGGCTTCTCTTTTTGTACTTCAGCTTcagataataattaatatataaacaaacagattCTTGCACGTTTTTAATCTTTCAGCTGCAGCTTCTCTCGCCCAGATGCAGAGAGTGATATGACATCTTCAGAGGGAGGAGAAACGAATGAGGGCATGTAAGACTGAAAGAGAGGAAGAGAAATTAACAGGATATAGGTGTGCACCGCATGTATGAGTGTGTAGATTTGTAGATGTGCAGTTTGGTGTTGGTGGTGGTCGGAGCTTGCAGTGACTTTACTCTGAAGTAATGTCATTTCAAAGCTGATATCCCTCGTGCGACACTAAAAGACAGAGAGAACAAGAAAGGGGAAGAACAGGGCTGTGTTAAACTTTCCGGTCCAGATACACGCTAGATTACCTCAGCAAAACACCAAACAAGCACAAAATAAGCAGAATTTGTTTGGTTGACTACTTTCTATAAATGAGTCTGGATGCTTTCTGCATTTTTGATCACATTCACAAGCCTCAAAAGTGGATCATCAAGAACAACAGCAGCTCAGCTGAGCACATACTTCATACAAGCTACTACTTTGAACGGCTTTCCATCCAGCGTGCACATCATGGTGCTCGTCTTTAGAAATCTGCTACTGTTTCTTGCTCTCTGGCCCTGTTTCAGGTCCACCAGTGCACAAGAGTTTGCAGTGACAGATGATAATATCACCACCGCATTACCTGATAATGTCACTGTGGAGGACACAactgttctgtcatcattttatcATGTCACTGATGAAGCGATCAGTTCTGCACCAGTAGATCTTGTCACAGATGTACAGACGGAACCAGACACATATGATCTGCAGACCACACTTGCGAGCACAACAGGCACCATGCAGGAGACAACAACTATGAATACTACACCCCTCGGCCCTGTTATTCAACAAACAACACCAGAATCTGCTCCTGAAACAACGGCAACAGCTGAAATTCAGCTGACCACAATGACCAGCATTACTCTGCCTGTTTATATGGAAACATTAATGACTGAACAGAAAACTCCAGAAGCCACAACCACGAGTCAGTTTGAAACAACCGTTTCCTTCAATGTGCCAATGCTGACCAGTCCTTCAGAACGTCCAACAGATTTCATCACGACACGAGCTTTGGCCATGATGACGTTTGATTCAACAGAAGATCCCTCAACCAATATGATTGAACTTCCTACACATGAGGTTTCAAACAAATTGTTTGACCTTGTGGACAACAGCACGACAACCCCCACTGAAACTCCAACATCCGCTTCACAATTGACTGAAAATGAGCCTATTATAAATGGAGTGTTACATGACAACACAGTCTCTGAAGATTTCATGCCTGTCACAAGTGTTGTTAACGTTAAGCAAAGTACTTCTCATGAAGAAACCAACTGGTTATTAATAATCATAGTGTGTGCGATCGCTGCTTGTGTGCTATGCGTTATCGTGATACTGTTCATACAACAGCGAAAGAAAAAGGCCTCTCGGACATTTGGCCCAGCCTATATGAATGGACAAAGCAAACGGTCTAAGAAGAAAAAAGGGGCGGAGGATGACAAGTGGGCAGGGCCTGTGAATCTGGAGGCGGGAGCTGAATGTGATGCTGACGTCCAGGAGGGTCTTCTGCATAACGATGAGAAAAAGGACGGAGACGATGTGGTGCTCAGTACATTCGCCACCATGGATGAAGATGCCATGTCTGATGGAGGAGTGGGTGGAGAAGGAACCAAAGAGGCTAAGAAATGGGAGGAGCAGGAACCTATGCCTTTCATAGATGAAGATGTGGATGAAAATAAGGTGGGAAAAACACTGTCCGAAAATGGGAGTTCGAAGGGAGACGGGAAAAGTGAAGAGAACATGAATGGAGGAGAAACGTTCTGTCTTACCACGGCTGTCTAAAAGTCTTCTGGGAATCTGTATCTTGTATGTGTGTAACGGTGCCATAAACACGGACTATATCttacaaatgtgtatatattatttgaTTATCATGCTGATTCTGTTTCAGATTTGTGTATAATACTGAAAAGCACAGGTGACAAAACACTCAGTAGTGTGAACGTATGAGGTACAAATCATCAATTTTTAAAGCTAGCATCTTTCTGTTGACTAATACAGTGAATTACCTTGACCATCTGAATGATTAGCCAAATTTCCATTGGAAAATCTAGCAGTTGTGTCATTTGCTATTGAAATTTAGCAAACAATAGAGGGGGAAATGTTCCCAACACTCAAATACAAAATGTCTGAATGAATtagatttataataaaaatgcatctATTCAAAATGTTTGCTATCGATGTGGACTTCACCTGCTTTCTCCCAGTTCACACAGGGATGAGATTAGTGACAACACAAGTATATTTACTAATTACAGCAGACAATGTTAATCTTCAAAATAACCATGCAGCAAAGATTTTCTGACATTATGAGAATGAATTCACAAAATATGCAATCAAATGACCTAATATATAGAGGGAGTTTCTGACTTTGATAGAAATTATGTGTGTAATTGAATTAAATCCATTGAATTTTAGTAAAGTGTTCTTTTTTAAAGAACATGGGTTAGGAAATTTAAAACAAGATATTTATTCTGTTTCATTACCAAGCTGTTTGTGAATGCAAAAGTTCTGCCATACTAAAATTGCATCAAAAAGATACTGTCACCTAAAACAGCGAAAAATAATTCTGACCAGTTCCAGTTTAACGTTAATAACTAATCTATGTAGATTCATACAAATTTGCATATACATTAATGAACTGGCAGTATTTGCTAACTACCAGTAAACAAGGTCTGTTTTTACACTTCCTGGGTCTATTGACACATTTTAACTTTTGTGTCAATGACATCACTGTTGCAAATGAAACATTTATTCTAGTGTGACTTACAAAAACTCCTGCTATCGTCACTGAATGAATATGttgcattccgctgtggtgaacccagactaataaagggagtaatccaaaaagaaattgaatgaatgaataattgttggGGTGATATTGTAGCGAAGTGCTTctagcataaaatataataaaaggcaGATATTCAGTCACAGATATTGAATTATCTAATgtaaaacaacattaaacactAAATAAACCAAATgcaattcatgtttgttaatgctGTTAAAAAAGCAATATCTTTCACGTGAATCATTTAAAGTCACTTGTTTATTCATATGTTTACACAGTAACAGACCATTAAACCACATGCCACCTTTAACTCCAATATGGTGAAACTGTTATTAaaccacaaatctcatgtattccAAAATGTAGTGCCTGTGAACTGCAGCAATGTGACTATTGGATGCACACACTGTGATGTTCTGTTGATACTGTGCAGCCAAAttaatgtataatgtatttaAACCAACGATCAAAATTTTTTTGccatgttttcaaactatttaacaaaaattagctaaaactagggctgcacaatatattgtttcagca

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0048468 cell development biological_process
GO:0048747 muscle fiber development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007507 heart development biological_process
GO:0007517 muscle organ development biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0055006 cardiac cell development biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0009888 tissue development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0031033 myosin filament organization biological_process
GO:0031034 myosin filament assembly biological_process
GO:0035051 cardiocyte differentiation biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0045214 sarcomere organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0030241 skeletal muscle myosin thick filament assembly biological_process
GO:0042246 tissue regeneration biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0071688 striated muscle myosin thick filament assembly biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0008015 blood circulation biological_process
GO:0030029 actin filament-based process biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0060047 heart contraction biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0005576 extracellular region cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051608 True 3511 lncRNA 0.39 2 32598644 32603191

Neighbor

gene id symbol gene type direction distance location
XLOC_026482 tspan4b coding downstream 2250 32587010 ~ 32596394 (-)
XLOC_026481 NA coding downstream 26592 32565194 ~ 32572052 (-)
XLOC_026480 rcn3 coding downstream 57572 32535986 ~ 32541072 (-)
XLOC_026479 si:ch211-195b15.7 coding downstream 126489 32458720 ~ 32472155 (-)
XLOC_026478 prmt1 coding downstream 235623 32356833 ~ 32363021 (-)
XLOC_026484 CU459155.1 coding upstream 65 32603256 ~ 32637678 (-)
XLOC_026485 si:ch73-248e21.5 coding upstream 4589 32607780 ~ 32611833 (-)
XLOC_026486 mylpfa coding upstream 209857 32813048 ~ 32818607 (-)
XLOC_026487 zgc:153733 coding upstream 218014 32821205 ~ 32831971 (-)
XLOC_026488 si:dkey-16l2.20 coding upstream 251966 32855157 ~ 32859347 (-)
XLOC_026477 NA non-coding downstream 260949 32325134 ~ 32337695 (-)
XLOC_026474 NA non-coding downstream 376559 32185899 ~ 32222085 (-)
XLOC_026469 NA non-coding downstream 641278 31935697 ~ 31957366 (-)
XLOC_026460 NA non-coding downstream 947933 31650253 ~ 31650711 (-)
XLOC_026499 NA non-coding upstream 697003 33300194 ~ 33304123 (-)
XLOC_026500 CABZ01012959.1 non-coding upstream 740885 33344076 ~ 33345247 (-)
XLOC_026505 CR396582.3 non-coding upstream 821001 33424192 ~ 33424328 (-)
XLOC_026509 CU695077.1 non-coding upstream 1078327 33681518 ~ 33690754 (-)
XLOC_026511 NA non-coding upstream 1315375 33918566 ~ 33919195 (-)

Expression


Co-expression Network