XLOC_026486 (mylpfa)


Basic Information

Item Value
gene id XLOC_026486
gene name mylpfa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32813048 ~ 32818607 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051611
CCAACGGGAGAGCAGCTGAAGATCACAGCACATGCCAGAGAAACAGAGAAAATTAAATGCTTTCACAATCATTGACCAGAACAGAGACGGTATCATCAGCAAAGACGACCTTAGGGACGTGTTGGCCTCAATGGGCCAGCTGAATGTGAAGAATGAGGAGCTGGAGGCCATGATCAAGGAAGCCAGCGGCCCAATCAACTTCACCGTTTTCCTCACCATGTTCGGAGAGAAGTTGAAGGGTGCTGACCCCGAAGACGTCATCGTGTCTGCCTTCAAGGTGCTGGACCCTGAGGGCACTGGATCCATCAAGAAGGAATTccTTGAGGAGCTTTTGACCACTCAGTGCGACAGGTTCACCGCAGAGGAGATGAAGAATCTGTGGGCCGCCTTCCCCCCAGATGTGGCTGGCAATGTTGACTACAAGAACATCTGCTACGTCATCACACACGGAGAGGAGAAGGAGGAGTAAACTACCTTGGAATCAAGAAAACGAAGAGAAGAACATGCATCCCTCACAGCTTAATCCTCCCAGTCTGTTGTCTGGCCTTCTCTAACTTTTGTTTTTCTTCCTCCCTTTCTTGCTTTCTACCATCGTTGTTACTCCAAGCACTTACACTCTCCATCTTACCAAAGACTTGTCTCGCTGGGACTGAATTGGGAGGGTGGAGAGGAACACGACCACAGTGTCTGTCGAGTGGGGACATTGGATTGTTTTCAATAAAATGAACATCATTTCTGTATCTCTcacattctctctttctctctgtttctcACTCGTTACCCGCGACCACCTCTCTTTCATTTCAGTCAAGCTTGCATGAAAGTCGCTGCTTCTTCTGCTGCAGTCTTAGGAGTTGAAACGAAGGCATCTATAGTTTGGGGCTGAAACATCTCTCTAGATCAATGTGGAAGAGTGCTCACTCTGAGGGGGAAAGAAGCACGATGGAGTGATCTCACTCTATAATAGAGGAACCAGTCATCATTCTCATTTCCTCCTCTGGTGGTTGActaaaaagagaaagagaaaatgagGGTTTTGTGCTGAGTGAGTTTAGCCTCCTAAAAGCGATGCCGAGCTCATCACAGAGGGAGTGAGAGGGACAGACCATCCTAGGAAGAGAGGAGAGCAGGGACTGAAAGAAAACATAACCTCTTCACTCCCCCTCTCCCCTCCTCTTCTCTATTTCTCTGtccatcttttcttttttctttttttgctttctgCATCTGGGCCTGCTTTGCTCTGCCAAACCTCTTCTGTAACCAATAAAAGACACAAACTGTGAATAAAACATCTTTTTGTA
>TCONS_00051612
ACTTAAGGTTGGGTCTATAATTAGCAAGGGGCCTTCGTCAGTATATAAGCCCCTCAAGTACAGGACACTACGCGGCTTCAGACTTCTCTTCTTGATCTTCTTAGACTTCACACATACCGTCTCGACATGGCACCCAAGAAGGCCAAGAGGAGGGCAGCAGGAGGAGAGGGTTCCTCCAACGTCTTCTCCATGTTTGAGCAGAGCCAGATTCAGGAGTACAAAGAGGCTTTCACAATCATTGACCAGAACAGAGACGGTATCATCAGCAAAGACGACCTTAGGGACGTGTTGGCCTCAATGGGCCAGCTGAATGTGAAGAATGAGGAGCTGGAGGCCATGATCAAGGAAGCCAGCGGCCCAATCAACTTCACCGTTTTCCTCACCATGTTCGGAGAGAAGTTGAAGGGTGCTGACCCCGAAGACGTCATCGTGTCTGCCTTCAAGGTGCTGGACCCTGAGGGCACTGGATCCATCAAGAAGGAATTccTTGAGGAGCTTTTGACCACTCAGTGCGACAGGTTCACCGCAGAGGAGATGAAGAATCTGTGGGCCGCCTTCCCCCCAGATGTGGCTGGCAATGTTGACTACAAGAACATCTGCTACGTCATCACACACGGAGAGGAGAAGGAGGAGTAAACTACCTTGGAATCAAGAAAACGAAGAGAAGAACATGCATCCCTCACAGCTTAATCCTCCCAGTCTGTTGTCTGGCCTTCTCTAACTTTTGTTTTTCTTCCTCCCTTTCTTGCTTTCTACCATCGTTGTTACTCCAAGCACTTACACTCTCCATCTTACCAAAGACTTGTCTCGCTGGGACTGAATTGGGAGGGTGGAGAGGAACACGACCACAGTGTCTGTCGAGTGGGGACATTGGATTGTTTTCAATAAAATGAACATCATTTCTGTATCTCTcacattctctctttctctctgtttctcACTCGTTACCCGCGACCACCTCTCTTTCATTTCAGTCAAGCTTGCATGAAAGTCGCTGCTTCTTCTGCTGCAGTCTTAGGAGTTGAAACGAAGGCATCTATAGTTTGGGGCTGAAACATCTCTCTAGATCAATGTGGAAGAGTGCTCACTCTGAGGGGGAAAGAAGCACGATGGAGTGATCTCACTCTATAATAGAGGAACCAGTCATCATTCTCATTTCCTCCTCTGGTGGTTGActaaaaagagaaagagaaaatgagGGTTTTGTGCTGAGTGAGTTTAGCCTCCTAAAAGCGATGCCGAGCTCATCACAGAGGGAGTGAGAGGGACAGACCATCCTAGGAAGAGAGGAGAGCAGGGACTGAAAGAAAACATAACCTCTTCACTCCCCCTCTCCCCTCCTCTTCTCTATTTCTCTGtccatcttttcttttttctttttttgctttctgCATCTGGGCCTGCTTTGCTCTGCCAAACCTCTTCTGTAACCAATAAAAGACACAAACTGTGAATAAAACATCTTTTTGTA

Function

symbol description
mylpfa Predicted to enable calcium ion binding activity. Is expressed in caudal fin; esophagus; musculature system; segmental plate; and somite. Human ortholog(s) of this gene implicated in distal arthrogryposis type 1c. Orthologous to human MYLPF (myosin light chain, phosphorylatable, fast skeletal muscle).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990712-15 Predicted to enable calcium ion binding activity. Is expressed in caudal fin; esophagus; musculature system; segmental plate; and somite. Human ortholog(s) of this gene implicated in distal arthrogryposis type 1c. Orthologous to human MYLPF (myosin light chain, phosphorylatable, fast skeletal muscle).

Ensembl:

ensembl_id ENSDARG00000053254

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051611 False 1304 mRNA 0.47 6 32813048 32817274
TCONS_00051612 True 1471 mRNA 0.48 7 32813048 32818607

Neighbor

gene id symbol gene type direction distance location
XLOC_026484 CU459155.1 coding downstream 175370 32603256 ~ 32637678 (-)
XLOC_026485 si:ch73-248e21.5 coding downstream 201215 32607780 ~ 32611833 (-)
XLOC_026483 NA coding downstream 209857 32598644 ~ 32603191 (-)
XLOC_026482 tspan4b coding downstream 216654 32587010 ~ 32596394 (-)
XLOC_026481 NA coding downstream 240996 32565194 ~ 32572052 (-)
XLOC_026487 zgc:153733 coding upstream 2598 32821205 ~ 32831971 (-)
XLOC_026488 si:dkey-16l2.20 coding upstream 36550 32855157 ~ 32859347 (-)
XLOC_026489 zgc:113090 coding upstream 51578 32870185 ~ 32873641 (-)
XLOC_026490 kat7a coding upstream 71189 32889796 ~ 32902270 (-)
XLOC_026491 g6pcb coding upstream 87475 32906082 ~ 32912787 (-)
XLOC_026477 NA non-coding downstream 475353 32325134 ~ 32337695 (-)
XLOC_026474 NA non-coding downstream 590963 32185899 ~ 32222085 (-)
XLOC_026469 NA non-coding downstream 855682 31935697 ~ 31957366 (-)
XLOC_026499 NA non-coding upstream 481587 33300194 ~ 33304123 (-)
XLOC_026500 CABZ01012959.1 non-coding upstream 525469 33344076 ~ 33345247 (-)
XLOC_026505 CR396582.3 non-coding upstream 605585 33424192 ~ 33424328 (-)
XLOC_026509 CU695077.1 non-coding upstream 862911 33681518 ~ 33690754 (-)
XLOC_026511 NA non-coding upstream 1099959 33918566 ~ 33919195 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G274619 NA unknown CI01000069 null 4129128 ~ 4133378 (+)