XLOC_026488 (si:dkey-16l2.20)


Basic Information

Item Value
gene id XLOC_026488
gene name si:dkey-16l2.20
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32855157 ~ 32859347 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051615
GTCACTGCTGGATTGGGCTCAGTGTTCACACTCTCTCTGCCTCCTCAAAGGACTAAACAGCAGCTAAAGAAGTCATCctgaaatttccattgaaaaAAGAAGAAGCTTTGATGGGAAGTCATGTGACAACCTTGTCATTGAACACTAGAACAAAAGTTACTAAATAATCAAGAATAGCAAAGCTCCAGACTTAAGGGGAAGGTTACAAAACTTAAGGTTAGTAAACAGCTTTGGATCTCTGGTGGAGTTGAGGAATTTCAGACACTTCTTCCCTCAAGATCAAGTCTGGGCGAGTCTAGATGACTGAATTAGAGGAAGTGAAGGTTCTCGAGCCTTTTCGTAAGCAGACTGAGAAAAGCACTGACCACTATCCTGGTCTGACAGCCATCTGTACAGACAAAGACCACCGCAAATTAGCAATATGCAGCATCATATGTGGCCTCTCCTGCTTTGGAATTATGTCCCTTATGTACTCCGTTAAGgctcgAGAGACGAGAAAAACGCTTGAACATGAAAGCAGCAGTGAAACAAAAGCAAAGGTGgaaaaatattctgaaaaagCTTGTAAATGGGGAATTGGGGCGATTGTAGCCTGGGTGGTTTTAATTCTCATCTTCCCATTTCTAGTGGTATTTTTTTCCTATATTGTAACTTTCATAGATTGACACTGTGAAACTGTTTATGACTTTTATTGCATATACTGCATGTTACATCTAAACGACTTAAAGAAGGACagtttttagagagagagagagatggtcaAACCTACACTTACAGGGGTGTTGAATGGTGCTCGCTGACAAATTCTGTAAATAGACAaaattttaaattcatatatacACCTGTAAGGTTATAACAGAAAATACCGGATGGTTACTAGTAAAAGCATACGTCAAGATCCCTAAATGAGTTTAAAACCCACCACTGCAGAGCAGAAAGGCCAATGCAGGTAGTCCAAAAGTGGTAACTAACAGGAATGTGTTACATATATTAAAGCCAAGCACACAAGATACAAACAAACTACTTTTACAATCCAGCAAGCTGTTTTTATTTAGGCTCTTAGTGGAAATTAGAAATGAAACACTCACAGAGAGCATGGCAGTCAAACGTTGAATGTggttacattattattatcatcattctgTTCTTGTAAATAAGTTATTCCGATATGTTGTGCTTTTGATGTTTTGTACAATGCGTGTCTTTCAGCCTTTGTAATAAAATGTGTAACAGTCAAAA
>TCONS_00053063
TCAGCTCAGTCTGTCACTGCTGGATTGGGCTCAGTGTTCACACTCTCTCTGCCTCCTCAAAGGACTAAACAGCAGCTAAAGAAGTCATCctgaaatttccattgaaaaAAGAAGAAGCTTTGATGGGAAGTCATGTGACAACCTTGTCATTGAACACTAGAACAAAAGTTACTAAATAATCAAGAATAGCAAAGCTCCAGACTTAAGGGGAAGGTTACAAAACTTAAGGTTAGTAAACAGCTTTGGATCTCTGGTGGAGTTGAGGAATTTCAGACACTTCTTCCCTCAAGATCAAGTCTGGGCGAGTCTGTAAGTACAGAGGGCTTCAGTTTCAACAACTGGCTCAAAATATCATGCTTTTCACCTCTTCTTTCAAGATTATTGTCTTTCTGGGAGCCCACTGTACATTGCTGAGATTTTAAATCACAGTCTCGTCGTGACAGTCCTGTACTTGTGATTCAGAAATTGATAAAGATGTGGCTTTTCACagtcaaaataaaaagtaaaagataATAAAGCTTGGGGGGAAGCTGGCTTTGTAATTAATGAACAGTGAAGTCTGTCATTACTCAATATAGTTGCCAGTTTCTGTCATAACATGACCATCTCTGTCCATACTAGTTTTTCAAGCTCCAAAACAATGAGAGATACAAGAAAGTCTCTTCGCATGAAATGCTTTGAGGGGATTTTAGGAAATCCCTGTTCAgccgttttttatttatttgattctcactctttattatttataaacttCTTTCTTTTTAACCTCATATTAAAACTGAAAGTAAAATGAATTAGAGGCAAGAATCTGTTCATTTTACAAATCAGTGATCAGCCCATTAATTCACAAGTGTATGTTTAACATTTGGTTAAGTTTAATTAAACCACAAGTggaacactttttttaaatgggaAGAAAATAAATACTCAATTTGATTGAACTTATTTAGCAAAAAGATTGCATTTGtaacaaaatgtgttttttaactatcaaattgttttaaatatataaatgcatataacaAAATATAGTATACATTGATTGCCAGttaattaatatttcacaaataagCATCACATCAATCACattgaagcatttaaaaaaaaattaattactaaaCAAGACCATCAGTAATTAATATGGCAGAGATCGCTTTTTGGAGACTGCTGCACtgtaaaagcgattagttgactccTTGCCCTTAAATtagttaaagaaatagttcaccataaaataaatattgtcatgtttatctttctttcatctgttgaattCAGaagcaagatattctgaagaaagctaaaacatgtaaccattgacttcatagtatttgtttttcactaTGAAAGTCGATAGTaacagcttttcagctttcttcaaagtatattCTTTTTGagatgaaagaaactcacaaaggtttggaaccaattgAGAATGAGAAAATGTCgaataaactattcctttaagtaagttaaaatattatacaATCAATACCATTTAAAATAAGTCAATTTAACCATTcgatttaattcatctttattactatagaacttttacaatgtagattgtcaacacagcttctagtaaattgaaattctagtaaattgaaactacgtcagtccagttttctgagttaaagttcagtttagttcagttcagtgtagtttaaatttcactgctgaaagtccaaacactgaagagcaaatccattgatgcacagctccacaagtcccaaaccaatcaAGCCTGTGGCAACAGcagtgaggaacaaacttcaccaattggtgaaagtgaaggaaaaaaaaccttgagacaAACCAGGCTCAAGTTTCAagttacaacaggtttactcaatgTTAAgcaaacttgttgcttttaatgcAACagctttactttattttatttttaacctaaACTAATCGTTTTCAACAGTGTGCATGGTGAAGTACACGCAAAATTATTACTTCCATGTCGAGTCCCCtacattcactgtaaaaagtgaaaattcaaattactttgacttcttacaattaaattaagtttaacaaaCTACAGTACAaatgattcaatataatattgttaatacaataataaatagaaaaatacttttattacagtacaaataattTCCTTTCCATGTTAATATCATAgtaatacttttgttttgtgaCAAGTGCACGCATTGCTCACTATTAAATAGCGAACAATACACTGCAAaaaccaacagtcaactttatcaaatgaaatgagtgttaaCTCAAAAAAATTtcctaaaagttaattctactcacatgaagagttttgaacttagtgCTGACACAGTAATGAGTTAAATAGCTCATCACTTCTACTTCAGTTAAATTCACAGTACTTGTATAGATCAGTTTTTTAATTctaatggtttgtagcaatcggtttcctcaaatggtttgagttgccttaacttattgggttttacagtactcgtttggtttgagttctctacatttattggattttactgtgctcaaattgctcctttacctaaaataaatgactttatttattactgaaaactgtcataaattaaatttgtttaagttttcattttttacGGTATTGGAAACATTTTtcgggttccacacaatcagtgtgtgttgagacaacatgaaagaattaaggaaacttattagtttttacaaatttaagttaattgaatgtaaaacaattataCTGTTTCCAACCCAAAATAAATGCTCAACAATTGTCGTTTTAGctcatttttgcatgaactgactgagtgtatatttatatattttttatattctgaaCAGAGATGACTGAATTAGAGGAAGTGAAGGTTCTCGAGCCTTTTCGTAAGCAGACTGAGAAAAGCACTGACCACTATCCTGGTCTGACAGCCATCTGTACAGACAAAGACCACCGCAAATTAGCAATATGCAGCATCATATGTGGCCTCTCCTGCTTTGGAATTATGTCCCTTATGTACTCCGTTAAGGTAACTATGGCTTAATTATTACTGTATTGAAATATCTGTACCGTATCTTTGTATTTGTACCATTCCTTTGGTTAGTTATCGATTATTGTTGGATATAGAAGTTAAACTACATTTAATATGTGCAATCCCACTAAAAATAGGGAGTAAAGACAAAACACAAGAGTTATGCAATGAAAATAAACACTTTGTATATCTTTATAGTAAGTTTGTGTGAATCTAATGTAATTATGAACAGATTCTCACATATACAGTGCAGCTATACAGTAAACTGATCTGTGGCCAGTAGCATAGATACTGTTGGTAGAGATGAAACAAAAACGAACACCATGAAATTTTAGAAGTGTAGTCAGGGGAGAAAGAAATGTATAAAGTAATCTAGCAATCTGGAAAAACACCTTGAAACCTGACACtgccttttctctttttttttttcaggctcgAGAGACGAGAAAAACGCTTGAACATGAAAGCAGCAGTGAAACAAAAGCAAAGGTGgaaaaatattctgaaaaagCTTGTAAATGGGGAATTGGGGCGATTGTAGCCTGGGTGGTTTTAATTCTCATCTTCCCATTTCTAGTGGTATTTTTTTCCTATATTGTAACTTTCATAGATTGACACTGTGAAACTGTTTATGACTTTTATTGCATATACTGCATGTTACATCTAAACGACTTAAAGAAGGACagtttttagagagagagagagatggtcaAACCTACACTTACAGGGGTGTTGAATGGTGCTCGCTGACAAATTCTGTAAATAGACAaaattttaaattcatatatacACCTGTAAGGTTATAACAGAAAATACCGGATGGTTACTAGTAAAAGCATACGTCAAGATCCCTAAATGAGTTTAAAACCCACCACTGCAGAGCAGAAAGGCCAATGCAGGTAGTCCAAAAGTGGTAACTAACAGGAATGTGTTACATATATTAAAGCCAAGCACACAAGATACAAACAAACTACTTTTACAATCCAGCAAGCTGTTTTTATTTAGGCTCTTAGTGGAAATTAGAAATGAAACACTCACAGAGAGCATGGCAGTCAAACGTTGAATGTggttacattattattatcatcattctgTTCTTGTAAATAAGTTATTCCGATATGTTGTGCTTTTGATGTTTTGTACAATGCGTGTCTTTCAGCCTTTGTAATAAAATGTGTAACAGTC

Function

symbol description
si:dkey-16l2.20 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-380 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000098191

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051615 False 1239 mRNA 0.38 3 32855157 32859335
TCONS_00053063 True 4187 lncRNA 0.33 1 32855161 32859347

Neighbor

gene id symbol gene type direction distance location
XLOC_026487 zgc:153733 coding downstream 23186 32821205 ~ 32831971 (-)
XLOC_026486 mylpfa coding downstream 36550 32813048 ~ 32818607 (-)
XLOC_026484 CU459155.1 coding downstream 217479 32603256 ~ 32637678 (-)
XLOC_026485 si:ch73-248e21.5 coding downstream 243324 32607780 ~ 32611833 (-)
XLOC_026483 NA coding downstream 251966 32598644 ~ 32603191 (-)
XLOC_026489 zgc:113090 coding upstream 10838 32870185 ~ 32873641 (-)
XLOC_026490 kat7a coding upstream 30449 32889796 ~ 32902270 (-)
XLOC_026491 g6pcb coding upstream 46735 32906082 ~ 32912787 (-)
XLOC_026492 aoc2 coding upstream 64838 32924185 ~ 32934359 (-)
XLOC_026493 casp6b.1 coding upstream 93728 32953075 ~ 32958574 (-)
XLOC_026481 NA non-coding downstream 283105 32565194 ~ 32572052 (-)
XLOC_026477 NA non-coding downstream 517462 32325134 ~ 32337695 (-)
XLOC_026474 NA non-coding downstream 633072 32185899 ~ 32222085 (-)
XLOC_026469 NA non-coding downstream 897791 31935697 ~ 31957366 (-)
XLOC_026499 NA non-coding upstream 440847 33300194 ~ 33304123 (-)
XLOC_026500 CABZ01012959.1 non-coding upstream 484729 33344076 ~ 33345247 (-)
XLOC_026505 CR396582.3 non-coding upstream 564845 33424192 ~ 33424328 (-)
XLOC_026509 CU695077.1 non-coding upstream 822171 33681518 ~ 33690754 (-)
XLOC_026511 NA non-coding upstream 1059219 33918566 ~ 33919195 (-)

Expression


Co-expression Network