G753958


Basic Information

Item Value
gene id G753958
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 83064786 ~ 83068093 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU856278
TTAATTATCAATAAAATAGGACATTTATTTCACAACGTACCAAACTAGGTGGCATAGAAGTAGTCCATTGCAAACAAGGAACCTGTATTATGGATTAAAATGATTTGGTCCTCGTTATACTACTGTCCACAGGTGAAATATCCAAAATACTTGGCTTTACAATAACATGAGATTGTACATGGTTAAAATCAAAGGTGCATTGGTACAACAGACTGCACTGTGTCTTGTGTAATTCCATTATGACATCATTAGAAAACCACAGCTGCTTTCTTAAGAGGCTCTCAACGTCAACAGCAgcatcgtggactacaggaggaggagggccaaGCACCCCCCTTCACATAGACTGAGATGTAGTGGAGCAGAACGAGAGCTTCATGTTCCCTAGTGTTCAtgtcactaaggacctatcatggttcaaacacaccaagactgtcgtgaagagggcacgacaacacctattcccccctcaggaggctgaaaagatttggcatgggtccttagattctcaaaaggttctacagctgcaccatcgagagcattctgactggttgcataaccagtgtgtatggcccagtgcatcactgggaccgagcttcctgccatccaggatctctataccaggccgtGTCAAAAGGAagatcagttggtagagcacggcacttgccagggttgtgggtgcgATTCCCACAGTGGCCCAGTACGaacaaatataaaaatgtatgcgctcactactgtaagtcgctctgaataagagcatctgctaaatgactaaaatgtaaaaatcaaagtgacagactgttctctctgctaccgcatggcaagcggtaccgtagcgccaagtctaggaccaaaaggctccttgagagcttctacccccaagccattagactgctgaacagttaatcaaatggccacccggacaatTGACATATTCCGGGTGGCCATCTCTTAGTTATTCAAAAAAAATTGTACTGACTTTCTTGCACAGGCTCGATGTACCCTCACTGGACTCTagccacacacactacacaaaaactccaatacacacacatacatacattcacACGCTTcacacacgctgctgctactctgtttattatctatgcatagtcacttttacccctacctacatgtacagtaccagtcaaacatttggacacacctactcattcaagggtctttcttactattttctatgttgtacaataatagtgaagacatcaaaactatgaaataacacatggcatcatgtagtaacccccaaaaaagtgttaaacaaatcaaaatatattttatatttgagattcttcaaattagccacccttttccttgatgacagctttgcacgttcttggcattctctcaaccaccttcacgagatagtcacctggaatgcatttcaattaacaggtgtgccttgttaaaagttcatttgtggaatttctttccttctttaatgcatttgagccaatcagttgtgttgtgacaagataggggtggtatacagaagatagccctatttggtaaaagaccaagtccatattatggcaagaacagctcaaatatgcaaagagaaatgacagtccatcattattttaagacatgaaggccagtcattcttgaaaatttcaagaacttttcaagtgccgttgcaaaaaccatcaagctctatgatgaaactggttctcatgaggaccaccacaggaaataaagacccagagttacctctgctgcaaaggacaagttcattagagttaactgcacctcagattgcagcccaaataaatgcttcacagagttcaagtaacatacacatctcaacatcaactgttcagaggagactgcgtgaatcaggccttcttggtcaaattgctataaagaaatcactactaaacgacaccaataataagaagagacaagcttgggccaagaaacacgagcaatggacattagacattaaatgtaagcatttcactgttgtattcggcacatgtgacaaactgatttgatttgaccagtggaaatctgtccttgggtctgatgagtccaaattgtagatttttggttccaactgccgtgtctttgtgagatgcagagtaggtgaacggatgatctcctcatgagtggttcccactgtgaagcacggaggaggtggtgtgatagtgggggggtgctttgatggttacactgtcagtgatttatttagaattcaaggcacacttaaccagcatggctaccacagcgataCGTCATTATAtggtttacgcttagtgggactatcatttgtttttcaacaggacaatgacccaaaacacactatttgaccaaggagtgtgacggagtgctgcatcagatgaccttgcctccacaatcacctgacctcaacccaattgagatggtttgggatgagttggaccacagagtgaaggaaaagcagccaacaagtgctcagcatatgtgggaactccttcaagactgttgccaagagtgtgcaaagctgtccatcaaggcaaagggtggctactttgaagaatacaatgtagaaaatagtacaaatgaagaaaaactcttgaatgagtaggtgtgtccaaacgtttgactggtcctgtaAATATTACCTTGGTTACCTAGACTAACCCGTACCCCTTCACATTGACTTGGTATAGGTACCCCTTGTATACAGCCccgttattgtgttactattttcccTAGATTAAGTTAGCACATTTTTCGGAAAATATACATCATGTGCTTGGTTCTTGTTGCCATAACACAGCTCCAATGCTATCAGTCGAAGGATTAGCATCGTGTATTAAAGACGCCACCTGTCGGAGGACAATATGGCCCCATCCTAGATGtcctctagcctggtcccagatctgtttagtGCTCTTTCCAACTCCATTGCTGTCATTGTGCAGCCATGTTTGGCATGATAATTCCATTTGGAGcaaaaacagactggcacccaggctagtcTTCTTCATCATCTATGAAAGGGATGTCCAGCTCTGAGAAGTTCCTGCTCCTAGTTTTGTTGTGGGCTGGGGGTTCTATCCATCTAGCCTGGTCAGTGGCTGTAGTAGTTCTCTGCGCCAGGTCAGGTGGCTTAGGAGGGCACTCCTGCCTCGGGCTCCTCCACAACAGGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU856278 True 3152 lncRNA 0.43 2 83064786 83068093

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-28 NA coding upstream 202602 82862111 ~ 82862184 (+)
LOC110530781 sppl2b coding upstream 306781 82728482 ~ 82758005 (+)
LOC110530778 LOC106590523 coding upstream 399765 82664195 ~ 82665021 (+)
LOC110530773 LOC106569595 coding upstream 529646 82525950 ~ 82535140 (+)
scp2a scp2 coding upstream 679928 82362119 ~ 82384858 (+)
LOC110530786 LOC106569613 coding downstream 107641 83175734 ~ 83204194 (+)
LOC118965639 NA coding downstream 131246 83199339 ~ 83204020 (+)
LOC110530792 NA coding downstream 163182 83231275 ~ 83281525 (+)
cplx4c LOC106569619 coding downstream 248651 83316744 ~ 83328050 (+)
LOC110530794 LOC106569618 coding downstream 293295 83361388 ~ 83380929 (+)
G753959 NA non-coding upstream 756 83063182 ~ 83064030 (+)
G753981 NA non-coding upstream 30212 83034243 ~ 83034574 (+)
G753957 NA non-coding upstream 41509 83021053 ~ 83023277 (+)
G753883 NA non-coding upstream 186202 82877922 ~ 82878584 (+)
G753848 LOC106569604 non-coding upstream 235054 82826254 ~ 82829732 (+)
G754864 NA non-coding downstream 137651 83205744 ~ 83208931 (+)
G754916 NA non-coding downstream 155179 83223272 ~ 83224112 (+)
G754935 LOC106569611 non-coding downstream 174235 83242328 ~ 83244775 (+)
G754946 NA non-coding downstream 191906 83259999 ~ 83266306 (+)
G753337 NA other upstream 1138627 81922162 ~ 81931491 (+)
sdhc LOC106569582 other upstream 1262501 81783282 ~ 81802285 (+)
G753205 LOC106569572 other upstream 1577176 81486820 ~ 81487610 (+)
G752398 NA other upstream 2322841 80741604 ~ 80741945 (+)
G752357 NA other upstream 2430734 80631310 ~ 80634052 (+)
G754927 NA other downstream 187646 83255739 ~ 83257866 (+)
G755286 NA other downstream 561279 83629372 ~ 83629738 (+)
G755277 NA other downstream 584952 83653045 ~ 83654438 (+)
G755298 NA other downstream 590004 83658097 ~ 83660046 (+)
LOC110529145 LOC106569623 other downstream 717867 83785960 ~ 83788580 (+)

Expression


Co-expression Network