XLOC_002649 (galt)


Basic Information

Item Value
gene id XLOC_002649
gene name galt
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 14263684 ~ 14488518 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004921
GATGGTTGTCGTAATCATCAAAAATGCCATTGAAATACGCAGTTTTCTTGCAGTCTTTGTCGATACAGTGAAACACATCGtatacatttatgtatattatgtttccactattattaatatattgggAACATCTTTAATCTGTTGAAATAGTGTTCGGATTATCATCTTTGTTAGCGACGCATACTGCGTTTTTCTTGCGCAGCGTTGTTTACCTCAGGATACTTAGTGAGGGAGAGCAAATGAAAACTTGAAACTCTAAAAAGAAACAATCAACGAATTCCTGTTTAATGTTTCATAACGAGTGAACAAGTAGATTAAGGACAAGCAGGAATAATTTTATTGTACCAGTACGCAGCAAAATGGACATGAACAATAAACCCACGTTTGATCCTAAAGAACACCAGCATTTAAGGTACAATCCTCTGCGGGACTCATGGGTTTTGGTCTCGGCCCATCGGATGAAGCGTCCATGGAAAGGACAGGTGGAGAAACCGCCAGAGGACAACATCCCACGGCATGATCCAAACAACCCTCTGTGTCCTGGCAGTGTGAGAGCTAATGGAGAGCTGAATCCTGAGTATGACAGCACATTCATGTTTGACAATGATTTTCCTGCTCTTCAGCCTGATGCTCCAGACCCCGGTTCGGATCATCACCCTCTTTTCCAGAGCAAAGCAGCCAGAGGCGTTTGTAAGGTCATGTGTTTCCACCCCTGGTCTGACATCACCCTCCCCCTGATGCAGCCTGCAGAGATCCGCAAAGTGATTGACAAGTGGGCAGATCTGACCGTAGAGCTCGGTGCTACATATGCATGGGTTCAGATCTTTGAGAATAAAGGAGCCATGATGGGCTGTTCAAACCCTCATCCTCACTGTCAGGTTTGGGCCAGTAATTTTCTTCCGAACGAGGCATCGTTGGCAGAGCGCTGTCAGAGAGACTTTTTGCAGAAGCACGGAGAGCCAATGCTGGTGCAGTACGCTCGGATGGAGGCACAAGCACAGGAGCGCGTGGTTGTAGAAAACGAGCACTGGTTAGTGGTGGTGCCGTATTGGGCGACATGGCCCTTCCAGACACTGCTGTTGCCACGACGACATGTCCTGCGTCTTCCTGACCTCACAACCCAGGAGAGAGACAGTCTGGCATCCATAATGAAAAGACTCCTGACGAAATATGACAACCTCTTTGAGGTCTCCTTCCCCTATTCAATGGGGTGGCACGgagcGCCAACAGGCAGTCATCTGAATAAAAACATGAGCCACTGGCAGCTTCACGCTCACTATTATCCACCTCTACTGCGATCCGCAAACATCCGCAAATTTATGGTTGGGTATGAGATGCTGGCTAATGAACAGAGGGATCTTACACCCGAACAGGCTGCAGAACAGTTAAGGAAGCTCAGCGAGGAACATTATAAGGTGAAGAAAGCAGAAGGTAAAAGCGGAGTGGAGAACTAAAAGACTGTGACCTGTCCACCACCTTCTGTGTCCAATGGCCAGATAATGAGAACATAAAACTGCAAGAAGCAGATGGAGCCATTAGACGACTCATCTGTTTTAGTGCAAAGAGTTGAAGATTTCAACTAACTACTTTTTTCTTGTCTTCTCATTCAGGTTTAAAGTTAAAATTGGCTCCCAAGTTTTCTGGTTAGGGCCTCCAAGGCCAAAGCATGTAAGCTGGTAATTGCTCTGTTGAAAGCCAAAGTGATTTTCCAGAAAGTTTCAAATGACAAGCTATAATCTTTACAATGTGCTGTTTCTATTGATTTAATGAACTCTGTTTGTGCTCTTTGAGCATTTCTGAATATAAATTTGTGTTAATACTTTCGATGAAATAAAGCTTAGACACTGATTATAATTA
>TCONS_00004922
CATGAACAATAAACCCACGTTTGATCCTAAAGAACACCAGCATTTAAGGTACAATCCTCTGCGGGACTCATGGGTTTTGGTCTCGGCCCATCGGATGAAGCGTCCATGGAAAGGACAGGTGGAGAAACCGCCAGAGGACAACATCCCACGGCATGATCCAAACAACCCTCTGTGTCCTGGCAGTGTGAGAGCTAATGGAGAGCTGAATCCTGAGTATGACAGCACATTCATGTTTGACAATGATTTTCCTGCTCTTCAGCCTGATGCTCCAGACCCCGTAAGGTCATGTGTTTCCACCCCTGGTCTGACATCACCCTCCCCCTGATGCAGCCTGCAGAGATCCGCAAAGTGATTGACAAGTGGGCAGATCTGACCGTAGAGCTCGGTGCTACATATGCATGGGTTCAGATCTTTGAGAATAAAGGAGCCATGATGGGCTGTTCAAACCCTCATCCTCACTGTCAGGTTTGGGCCAGTAATTTTCTTCCGAACGAGGCATCGTTGGCAGAGCGCTGTCAGAGAGACTTTTTGCAGAAGCACGGAGAGCCAATGCTGGTGCAGTACGCTCGGATGGAGGCACAAGCACAGGAGCGCGTGGTTGTAGAAAACGAGCACTGGTTAGTGGTGGTGCCGTATTGGGCGACATGGCCCTTCCAGACACTGCTGTTGCCACGACGACATGTCCTGCGTCTTCCTGACCTCACAACCCAGGAGAGAGACAGTCTGGCATCCATAATGAAAAGACTCCTGACGAAATATGACAACCTCTTTGAGGTCTCCTTCCCCTATTCAATGGGGTGGCACGG
>TCONS_00004923
CTTGCAGTCTTTGTCGATACAGTGAAACACATCGtatacatttatgtatattatgtttccactattattaatatattgggAACATCTTTAATCTGTTGAAATAGTGTTCGGATTATCATCTTTGTTAGCGACGCATACTGCGTTTTTCTTGCGCAGCGTTGTTTACCTCAGGATACTTAGTGAGGGAGAGCAAATGAAAACTTGAAACTCTAAAAAGAAACAATCAACGAATTCCTGTTTAATGTTTCATAACGAGTGAACAAGTAGATTAAGGACAAGCAGGAATAATTTTATTGTACCAGTACGCAGCAAAATGGACATGAACAATAAACCCACGTTTGATCCTAAAGAACACCAGCATTTAAGGTACAATCCTCTGCGGGACTCATGGGTTTTGGTCTCGGCCCATCGGATGAAGCGTCCATGGAAAGGACAGGTGGAGAAACCGCCAGAGGACAACATCCCACGGCATGATCCAAACAACCCTCTGTGTCCTGGCAGTGTGAGAGCTAATGGAGAGCTGAATCCTGAGTATGACAGCACATTCATGTTTGACAATGATTTTCCTGCTCTTCAGCCTGATGCTCCAGACCCCGGTTCGGATCATCACCCTCTTTTCCAGAGCAAAGCAGCCAGAGGCGTTTGTAAGGTCATGTGTTTCCACCCCTGGTCTGACATCACCCTCCCCCTGATGCAGCCTGCAGAGATCCGCAAAGTGATTGACAAGTGGGCAGATCTGACCGTAGAGCTCGGTGCTACATATGCATGGGTTCAGATCTTTGAGAATAAAGGAGCCATGATGGGCTGTTCAAACCCTCATCCTCACTGTCAGGTTTGGGCCAGTAATTTTCTTCCGAACGAGGCATCGTTGGCAGAGCGCTGTCAGAGAGACTTTTTGCAGAAGCACGGAGAGCCAATGCTGGTGCAGTACGCTCGGATGGAGGCACAAGCACAGGTAATACACCCACATAAGACACACTTCATAGCGTTCAGGAGTCTGTCAGCAGAAAAACTCCCTATGGATAGTTTGTAAAGACTCTCACAAACACAATGTAAGAGTGCTTTGACAGCCCTGCTGAGAGGGAAAAATTCTTAAACTGGTTTGAGATGCTGTGTTGGTCACTGAGCTGGTTgagtttgatggttttaaaagggaattttcagttttgaggaAAAGTTTGAAATATTCTTATCACGTATTTGTGAAACTTCACCTTATCAAATGAGGATGATGTGAAGATCTTTACACCATAAAACAATCTgttaacaaatgattaaaatttcATCACTATGCGAAAACGTCATGCAGTACAACCATCAAGTAAAACACATTTCATCATTTTTGGAATACATGTCAGTCCACAAGTCTTTTATAAGAGTAACaattttacatacagtatacaatatatgtcaaagc

Function

symbol description
galt Enables UDP-glucose:hexose-1-phosphate uridylyltransferase activity. Acts upstream of or within galactose catabolic process via UDP-galactose. Predicted to be active in cytoplasm. Used to study galactosemia. Human ortholog(s) of this gene implicated in classic galactosemia. Orthologous to human GALT (galactose-1-phosphate uridylyltransferase).

GO:

id name namespace
GO:0033499 galactose catabolic process via UDP-galactose biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0006012 galactose metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0008108 UDP-glucose molecular_function
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko00052 Galactose metabolism
ko00520 Amino sugar and nucleotide sugar metabolism
ko04917 Prolactin signaling pathway

ZFIN:

id description
ZDB-GENE-070112-172 Enables UDP-glucose:hexose-1-phosphate uridylyltransferase activity. Acts upstream of or within galactose catabolic process via UDP-galactose. Predicted to be active in cytoplasm. Used to study galactosemia. Human ortholog(s) of this gene implicated in classic galactosemia. Orthologous to human GALT (galactose-1-phosphate uridylyltransferase).

Ensembl:

ensembl_id ENSDARG00000069543

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004921 False 1857 mRNA 0.44 11 14263684 14488518
TCONS_00004922 False 806 processed_transcript 0.52 8 14326826 14488154
TCONS_00004923 True 1417 mRNA 0.42 7 14420964 14488472

Neighbor

gene id symbol gene type direction distance location
XLOC_002648 BX000705.1 coding downstream 331988 13931569 ~ 13931696 (-)
XLOC_002645 cntfr coding downstream 490823 13460130 ~ 13772861 (-)
XLOC_002647 BX293994.1 coding downstream 651436 13612133 ~ 13612248 (-)
XLOC_002646 BX293994.2 coding downstream 656541 13607027 ~ 13607143 (-)
XLOC_002644 il11ra coding downstream 866964 13305610 ~ 13396720 (-)
XLOC_002650 hdhd2 coding upstream 36666 14525184 ~ 14540443 (-)
XLOC_002651 ier3ip1 coding upstream 54208 14542726 ~ 14545658 (-)
XLOC_002652 skor2 coding upstream 59423 14547941 ~ 14556978 (-)
XLOC_002653 CT027820.1 coding upstream 243765 14732283 ~ 14732399 (-)
XLOC_002654 smad2 coding upstream 382618 14871136 ~ 14943281 (-)
XLOC_002643 CR759894.1 non-coding downstream 958501 13305065 ~ 13305183 (-)
XLOC_002642 NA non-coding downstream 961711 13298839 ~ 13301973 (-)
XLOC_002656 NA non-coding upstream 542488 15031006 ~ 15042748 (-)
XLOC_002657 NA non-coding upstream 544454 15032972 ~ 15034960 (-)
XLOC_002660 CT027832.1 non-coding upstream 593892 15082410 ~ 15086297 (-)
XLOC_002666 NA non-coding upstream 1228221 15716739 ~ 15724104 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_03960519_03974458 NA coding CI01000304 null 3960324 ~ 3974458 (-)