XLOC_026493 (casp6b.1)


Basic Information

Item Value
gene id XLOC_026493
gene name casp6b.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32953075 ~ 32958574 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051628
aAAATATAACAGAAACCGATGGCAGGATTCAAAGGTAACTCCTTAAAAAGGATACAATGTATTTATGTAAACATTGTACAGTTATGAGATTGAGTTACTCATTTATCACACTGTACATTAGTTACATTAGccaatttatttactattaagtaataataatatagactTGTGCATAAATTATAAGGCTTAGTTTGTTAATTTCAGTAGTTTCTAACAGAATATTAAAATCcacagttgtgcttgttaacatttgttaatCACTATCAATTAATAAGGACTCACAACGAATTTCATTAACATCaactaagattaataaatgctgtaatagtagtattgtttattgtttgttcatgttatgaatgcattaactaatgaaaccttattgtaaagtgatacTGTTATTAATGCTTCAAATGTTATGTAATTTTACATGTAATTCATCTTTGTCTTTAGTGTGTATCCAAATCAAGAGTATGATATGAGACACGCAAGGCGAGGAATGGCTCTCATCTTTAACCAGAAACAATTCGATTGGAAGCTCGGACTGAAAACCCGCAATGGCACAGATAAAGACAGAGACGACCTTGTTAGCAGATTTCAAGAGCTGAATTTTGAGGTGAAGGCTTATAATGATTATAGTCGGGATGACGTTTTGTTGAAAATTCAAGAAGCCTCTGCTGCTGATCATGTAGATGCAGACTGTTTCGTCTGCATCTTTTTAAGTCATGGGGAAGATGGCCATGTTTATGCCAATGATAAGAAGATCGAAATACCTGAAATTACTGATTTGTTCAAGGGGGATAAATGTCGTAGTCTTGTGGGTAAACCCAAGATCTTCATCTGGCAGGCTTGCCGTGGTGACAAACTGGATGATGCTGTGACTGAAATGAGTGTGGAGGATGTTGAAATGGCTGTAGATGCAGGAGTGCTTTACACCCTTCCAGCAGGAGCAGATTTCATTATGTGTTACTCAACAGCTGAAGgaTTTTGCTCTTTTCGTGAGCCCTTGAATGGCTCATGGTACATTCAGGATCTGTGTGAAATCTTGGGGCGTTATCATTCAGAGCTACAGTTCACTGACATCCTGACGCTTGTTAACATGAAAGTTTCATTGCGCTCTGTACCAAACTGCAGGAATCGCGCTGCTATTGGCAAAAAACAGATGCCTTGCTTTGCGTCCATGCTCACAAAGAGGCTGTTTTTCAGAGACAATACTCAGATCCAATAGTGTTTTTTACTCCATGGCAATTTCAAATTCAGggattttttcattttcttttggtgGGTTTGATTTTGCCAATTAAGATGTGATCCTGGAACgtcatttctgttttaaaatcTTATCCTTACCCTTAAACCTAACTAAATAAGTCCACAAATCTGAGTATTTTGATATGACATAGACTACATATTTTAAGAGgcattaagctttttttttattgtgtaataacATATCTTTTGACCTgttgttatgtttttattgtttttttccagtTTTGTTGTACATTGCACTTGTTTTGTAAAGcctaaaaataaagtgtgatctttTCCTATGTAATGTGATTATTCTGACCTGTTGGAATGTGCATTCCAATAATTCAGTAATATGTTCTACATGTGACCTCTGCTAGTATATGTAAGTTATACATTCCTACATTTagatttctttttacatttatatctatttattacCTCAGCAAATATGAATTAAGAGTGTCATTCTCTTGTTTGACTTATTTGACTTATGAAAAAGTATGTGTGTATTTACTGATTTGTTTTCTTGAAAACCGCacctaaaaataaacagggctttcgtaatacatgtttttaaaggaaaaggTTTGTGCAGCCCTATAGTATAATGGGAAAACTGAACAGTCTTAATCAAAGTACAGTTCACTTTTGAATTTGTAGTGAactgatgtaatgtaatgtattttttatataatgccatgtcagcaaccaaggctatcttcatggcaggaatctttcaacaataaatatacaattaaaaaaaaataaaaataaaacattaataaataagatttttttaatacatttaatcatgataaaaattctaaaatcttttctggtttcactttttcaaaaatgtccttaaaagagttaatttcataaaaagtccttctggaatcagtaaaagcaggacagtccagtaaaatatgttttacagtaagaggagttttgcagcacaaactaGTTTTTCAaagtagggttttcaccttggagcaaaaaaccatgtgttattcttgtatgcccaatacgacatctggtaaaaactacttgatcaaatcgattcttaaaatgcCTTAAAATTCGTAATCCTTGATGATGTACTGTATTGAGGATCTCAATACAGTACATCATCTGTATTGAGGATCTGTTTATACGAGTTTCTGGCAGAATCATAAATTATACTCCCATAATCCAAACGGGATCGAATGAGAACTCGATAAAGACGCAAAAGTACAGTTAAATCTGCTCCCCATTTAGTTTTTGCCAACACTTTGCTTATGTTCATTGCTTTCAAGCACTTGTTTTTTAACAACTTCATATGAGggataaaagtcattttgttgtCAAAAAGAAGACCTAAAAACTTGATTTCTTTAACTACTTTGATTGGAAA
>TCONS_00051629
AGTGACTCGTTTGCCTTCAGGTGACTGCGTTGTTTATTAGTTTGTCATTAAAACGCTCCTAAATTTCACAGACTCCACCACTCCACCCCAACAAATCAAACGCGATGGCAACTAACACCAGAAGCCATGAATCAGTGTGTATCCAAATCAAGAGTATGATATGAGACACGCAAGGCGAGGAATGGCTCTCATCTTTAACCAGAAACAATTCGATTGGAAGCTCGGACTGAAAACCCGCAATGGCACAGATAAAGACAGAGACGACCTTGTTAGCAGATTTCAAGAGCTGAATTTTGAGGTGAAGGCTTATAATGATTATAGTCGGGATGACGTTTTGTTGAAAATTCAAGAAGCCTCTGCTGCTGATCATGTAGATGCAGACTGTTTCGTCTGCATCTTTTTAAGTCATGGGGAAGATGGCCATGTTTATGCCAATGATAAGAAGATCGAAATACCTGAAATTACTGATTTGTTCAAGGGGGATAAATGTCGTAGTCTTGTGGGTAAACCCAAGATCTTCATCTGGCAGGCTTGCCGTGGTGACAAACTGGATGATGCTGTGACTGAAATGAGTGTGGAGGATGTTGAAATGGCTGTAGATGCAGGAGTGCTTTACACCCTTCCAGCAGGAGCAGATTTCATTATGTGTTACTCAACAGCTGAAGgaTTTTGCTCTTTTCGTGAGCCCTTGAATGGCTCATGGTACATTCAGGATCTGTGTGAAATCTTGGGGCGTTATCATTCAGAGCTACAGTTCACTGACATCCTGACGCTTGTTAACATGAAAGTTTCATTGCGCTCTGTACCAAACTGCAGGAATCGCGCTGCTATTGGCAAAAAACAGATGCCTTGCTTTGCGTCCATGCTCACAAAGAGGCTGTTTTTCAGAGACAATACTCAGATCCAATAGTGTTTTTTACTCCATGGCAATTTCAAATTCAGggattttttcattttcttttggtgGGTTTGATTTTGCCAATTAAGATGTGATCCTGGAACgtcatttctgttttaaaatcTTATCCTTACCCTTAAACCTAACTAAATAAGTCCACAAATCTGAGTATTTTGATATGACATAGACTACATATTTTAAGAGgcattaagctttttttttattgtgtaataacATATCTTTTGACCTgttgttatgtttttattgtttttttccagtTTTGTTGTACATTGCACTTGTTTTGTAAAGcctaaaaataaagtgtgatctttTCCTA
>TCONS_00051630
AGACTCCACCACTCCACCCCAACAAATCAAACGCGATGGCAACTAACACCAGAAGCCATGAATCAGaAAATATAACAGAAACCGATGGCAGGATTCAAAGTGTGTATCCAAATCAAGAGTATGATATGAGACACGCAAGGCGAGGAATGGCTCTCATCTTTAACCAGAAACAATTCGATTGGAAGCTCGGACTGAAAACCCGCAATGGCACAGATAAAGACAGAGACGACCTTGTTAGCAGATTTCAAGAGCTGAATTTTGAGGTGAAGGCTTATAATGATTATAGTCGGGATGACGTTTTGTTGAAAATTCAAGAAGCCTCTGCTGCTGATCATGTAGATGCAGACTGTTTCGTCTGCATCTTTTTAAGTCATGGGGAAGATGGCCATGTTTATGCCAATGATAAGAAGATCGAAATACCTGAAATTACTGATTTGTTCAAGGGGGATAAATGTCGTAGTCTTGTGGGTAAACCCAAGATCTTCATCTGGCAGGCTTGCCGTGGTGACAAACTGGATGATGCTGTGACTGAAATGAGTGTGGAGGATGTTGAAATGGCTGTAGATGCAGGAGTGCTTTACACCCTTCCAGCAGGAGCAGATTTCATTATGTGTTACTCAACAGCTGAAGgaTTTTGCTCTTTTCGTGAGCCCTTGAATGGCTCATGGTACATTCAGGATCTGTGTGAAATCTTGGGGCGTTATCATTCAGAGCTACAGTTCACTGACATCCTGACGCTTGTTAACATGAAAGTTTCATTGCGCTCTGTACCAAACTGCAGGAATCGCGCTGCT
>TCONS_00051631
gaattctaaacctgcgtcctgatggtaACGATTCAAAAGCAGAGTGAAGGGGATGAGTATTATCTTTCCAAATCCCGATTGCTGTTTTTTCCATAAAGGAGTCAAATAGAATCTGCAGCGAATGTTTTTTGTGACTAGTTATCTTATTTTCCTGATTGATAATTTGCAataatatcttcttctgtgttgtGCTACAAAACCATGAAGcaatattatataAAATATAACAGAAACCGATGGCAGGATTCAAAGTGTGTATCCAAATCAAGAGTATGATATGAGACACGCAAGGCGAGGAATGGCTCTCATCTTTAACCAGAAACAATTCGATTGGAAGCTCGGACTGAAAACCCGCAATGGCACAGATAAAGACAGAGACGACCTTGTTAGCAGATTTCAAGAGCTGAATTTTGAGGTGAAGGCTTATAATGATTATAGTCGGGATGACGTTTTGTTGAAAATTCAAGAAGCCTCTGCTGCTGATCATGTAGATGCAGACTGTTTCGTCTGCATCTTTTTAAGTCATGGGGAAGATGGCCATGTTTATGCCAATGATAAGAAGATCGAAATACCTGAAATTACTGATTTGTTCAAGGGGGATAAATGTCGTAGTCTTGTGGGTAAACCCAAGATCTTCATCTGGCAGGCTTGCCGTGGTGACAAACTGGATGATGCTGTGACTGAAATGAGTGTGGAGGATGTTGAAATGGCTGTAGATGCAGGAGTGCTTTACACCCTTCCAGCAGGAGCAGATTTCATTATGTGTTACTCAACAGCTGAAGG

Function

symbol description
casp6b.1 Predicted to enable cysteine-type endopeptidase activity involved in execution phase of apoptosis. Predicted to be involved in apoptotic process. Predicted to act upstream of or within proteolysis. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0097153 cysteine-type endopeptidase activity involved in apoptotic process molecular_function
GO:0097200 cysteine-type endopeptidase activity involved in execution phase of apoptosis molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-48 Predicted to enable cysteine-type endopeptidase activity involved in execution phase of apoptosis. Predicted to be involved in apoptotic process. Predicted to act upstream of or within proteolysis. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000025608

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051628 False 2647 mRNA 0.33 5 32953075 32956808
TCONS_00051629 False 1235 mRNA 0.40 6 32954169 32958574
TCONS_00051630 False 794 mRNA 0.44 7 32954575 32958505
TCONS_00051631 True 783 mRNA 0.40 6 32954875 32957702

Neighbor

gene id symbol gene type direction distance location
XLOC_026492 aoc2 coding downstream 18716 32924185 ~ 32934359 (-)
XLOC_026491 g6pcb coding downstream 40288 32906082 ~ 32912787 (-)
XLOC_026490 kat7a coding downstream 50805 32889796 ~ 32902270 (-)
XLOC_026489 zgc:113090 coding downstream 79434 32870185 ~ 32873641 (-)
XLOC_026488 si:dkey-16l2.20 coding downstream 93728 32855157 ~ 32859347 (-)
XLOC_026494 casp6a coding upstream 2914 32961488 ~ 32965848 (-)
XLOC_026495 casp6b.2 coding upstream 10630 32969204 ~ 32973554 (-)
XLOC_026496 CT583642.2 coding upstream 19287 32977861 ~ 32981430 (-)
XLOC_026497 CT583642.1 coding upstream 21395 32979969 ~ 33031799 (-)
XLOC_026498 rarab coding upstream 107039 33065613 ~ 33259621 (-)
XLOC_026483 NA non-coding downstream 349884 32598644 ~ 32603191 (-)
XLOC_026481 NA non-coding downstream 381023 32565194 ~ 32572052 (-)
XLOC_026477 NA non-coding downstream 615380 32325134 ~ 32337695 (-)
XLOC_026474 NA non-coding downstream 730990 32185899 ~ 32222085 (-)
XLOC_026469 NA non-coding downstream 995709 31935697 ~ 31957366 (-)
XLOC_026499 NA non-coding upstream 341620 33300194 ~ 33304123 (-)
XLOC_026500 CABZ01012959.1 non-coding upstream 385502 33344076 ~ 33345247 (-)
XLOC_026505 CR396582.3 non-coding upstream 465618 33424192 ~ 33424328 (-)
XLOC_026509 CU695077.1 non-coding upstream 722944 33681518 ~ 33690754 (-)
XLOC_026511 NA non-coding upstream 959992 33918566 ~ 33919195 (-)

Expression


Co-expression Network