XLOC_026495 (casp6b.2)


Basic Information

Item Value
gene id XLOC_026495
gene name casp6b.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32969204 ~ 32973554 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051633
GTGACTGCGTTGTTGATTAGTTTGTCATTAAACGTTCATAAATTCCACAGAATgcaccacaacaaatcaataaTGATGGCAACTGAAACCACGAGCAATGAATCAGTGTGTATCCAAATCAAGAGTATGATATGAAGCACGCGAAGCGAGGATTGGCTCTCATCTTTAACCAGAAAGATTTCAGTCTGCTCGGACTGAAAACCCGCAAAGGCACAGATAAAGACAGAGACAGCCTTGTTAGCAGatttgAAGAGCTGGATTTTGAGGTGAAGGCTTATAATGATTATAGTCGGGATAAAGTTTTGAAGGAAATTAAAGAAGTCGCTGCTGCTGATCATGTAGACGCAGACTGTTTCGTCTGCATCTTTTTAAGTCATGGGGAAGATGGCCATGTTTATGCCAATGATGAGAAGATCAAAATACCGGAAATCACTGATTTGTTCAAGGGGGATAAATGTCGTGGTCTTGTGGGAAAACCCAAGATCTTTATCTGGCAGGCTTGCCGTGGTGACAAAAAGGATGATCCTGTGGCTCCAATGAGTGCGGAGGACAGTGATGATGAAATGGCTGTAGATGCAGGAGTGTCTAACACCCTTCCAGCAGGAGCAGATTTCATTATGTGCTACTCAACAACTGAAGgatTTTGCTCTTTCCGTGATCCCTTGAATGGCACATGGTACATTCAGGATCTGTGTGAAATCATGGGGCGTTATCGTTCACAACTGGAGTTCACCAACATCCTGACGCTTGTTAACAGAAAAGTTTCATTGCGCTCTATATGCGATGATCTTTCTGCTACTGGCACAAAGCAGATGCCTTGCTTTGCATCCATGCTCACCAAGAGGCTGTTTTTCAGGCCTAAGAAgtaatattactgttttactCTATGACAATTTCAAATTGCGGGATTATATCATTTTCTTTTGGTGGGTGTGAATCTGCCAAGTAAGAAattatcctggaccatcatttcATTATGAAAATCTAATCCATACCTAATCCCTACCCTTAACTTTAAATAATTCCCCAAATCTGAAAGGATTAATATTGGATGACAATGATGTAGATGCACataaccataactgtaaattaagcTTAACATAAACTTTAAATCTATCCCTTAAGTCTGACTGGCCAATTTTAGTGTTGTTCAGGAGCAAATTTGAGTTGGTTTCATTTTTATCTTATTACTGATTGGACCAGTCCTTTGATTTTGTGTTTTATCCAACGCATCACAATGACACTTGTTGTCTGAAGAATGAATGTATTTTGATATGACTTCAGACACTATTTGACAAAGAACAAAATTActgtttaataaagcaaatacTAAACAAAACAA
>TCONS_00051634
TCCACAGAATgcaccacaacaaatcaataaTGATGGCAACTGAAACCACGAGCAATGAATCAGAAAGTTTAACAAAAACCGATGGCTGTAATCAAAGTGTGTATCCAAATCAAGAGTATGATATGAAGCACGCGAAGCGAGGATTGGCTCTCATCTTTAACCAGAAAGATTTCAGTCTGCTCGGACTGAAAACCCGCAAAGGCACAGATAAAGACAGAGACAGCCTTGTTAGCAGatttgAAGAGCTGGATTTTGAGGTGAAGGCTTATAATGATTATAGTCGGGATAAAGTTTTGAAGGAAATTAAAGAAGTCGCTGCTGCTGATCATGTAGACGCAGACTGTTTCGTCTGCATCTTTTTAAGTCATGGGGAAGATGGCCATGTTTATGCCAATGATGAGAAGATCAAAATACCGGAAATCACTGATTTGTTCAAGGGGGATAAATGTCGTGGTCTTGTGGGAAAACCCAAGATCTTTATCTGGCAGGCTTGCCGTGGTGACAAAAAGGATGATCCTGTGGCTCCAATGAGTGCGGAGGACAGTGATGATGAAATGGCTGTAGATGCAGGAGTGTCTAACACCCTTCCAGCAGGAGCAGATTTCATTATGTGCTACTCAACAACTGAAGgatTTTGCTCTTTCCGTGATCCCTTGAATGGCACATGGTACATTCAGGATCTGTGTGAAATCATGGGGCGTTATCGTTCACAACTGGAGTTCACCAACATCCTGACGCTTGTTAACAGAAAAGTTTCATTGCGCTCTATA
>TCONS_00051635
TTTGTCATTAAACGTTCATAAATTCCACAGAATgcaccacaacaaatcaataaTGATGGCAACTGAAACCACGAGCAATGAATCAGGTAAGGGCTTCATCTGgttgaataaaataattgtgtaaaatGTTACTTGTTCATGCTCATCTGCAGGTTTCATTTCATTATTTCGGCACATTTGGttgaaagaaaataatttaaataaatttatacttAATCTTACAAAAATGAGGACAAACAGCTGAATTTAGTTTGTAACTTCtccttttatttattgattgaattgatttatacattatttatatatgcagATCTTTCAAAACGATCATAAGACAACAATGGGTGTTATCCaaaagttttaggacaactttgataaaagattttgatccacttcaaatgttgactattgtaTGTTCAtatgtctttctttctttaagcTCACTTGCAACGTGTACAAATTTTGAGTGATTTGCAATTTGCAATTGTGttgattttgaattttttttctcattcaaaGAAAGTTTAACA

Function

symbol description
casp6b.2 Predicted to enable cysteine-type endopeptidase activity involved in execution phase of apoptosis. Predicted to be involved in apoptotic process. Predicted to act upstream of or within proteolysis. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in ovarian carcinoma. Orthologous to human CASP6 (caspase 6).

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0097153 cysteine-type endopeptidase activity involved in apoptotic process molecular_function
GO:0097200 cysteine-type endopeptidase activity involved in execution phase of apoptosis molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060312-12 Predicted to enable cysteine-type endopeptidase activity involved in execution phase of apoptosis. Predicted to be involved in apoptotic process. Predicted to act upstream of or within proteolysis. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in ovarian carcinoma. Orthologous to human CASP6 (caspase 6).

Ensembl:

ensembl_id ENSDARG00000070368

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051633 False 1342 mRNA 0.39 6 32969204 32973554
TCONS_00051634 False 770 mRNA 0.43 7 32969767 32973511
TCONS_00051635 True 527 processed_transcript 0.29 2 32972974 32973534

Neighbor

gene id symbol gene type direction distance location
XLOC_026494 casp6a coding downstream 3356 32961488 ~ 32965848 (-)
XLOC_026493 casp6b.1 coding downstream 10630 32953075 ~ 32958574 (-)
XLOC_026492 aoc2 coding downstream 34845 32924185 ~ 32934359 (-)
XLOC_026491 g6pcb coding downstream 56417 32906082 ~ 32912787 (-)
XLOC_026490 kat7a coding downstream 66934 32889796 ~ 32902270 (-)
XLOC_026496 CT583642.2 coding upstream 4307 32977861 ~ 32981430 (-)
XLOC_026497 CT583642.1 coding upstream 6415 32979969 ~ 33031799 (-)
XLOC_026498 rarab coding upstream 92059 33065613 ~ 33259621 (-)
XLOC_026499 NA coding upstream 326640 33300194 ~ 33304123 (-)
XLOC_026500 CABZ01012959.1 coding upstream 370522 33344076 ~ 33345247 (-)
XLOC_026483 NA non-coding downstream 366013 32598644 ~ 32603191 (-)
XLOC_026481 NA non-coding downstream 397152 32565194 ~ 32572052 (-)
XLOC_026477 NA non-coding downstream 631509 32325134 ~ 32337695 (-)
XLOC_026474 NA non-coding downstream 747119 32185899 ~ 32222085 (-)
XLOC_026469 NA non-coding downstream 1011838 31935697 ~ 31957366 (-)
XLOC_026505 CR396582.3 non-coding upstream 450638 33424192 ~ 33424328 (-)
XLOC_026509 CU695077.1 non-coding upstream 707964 33681518 ~ 33690754 (-)
XLOC_026511 NA non-coding upstream 945012 33918566 ~ 33919195 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G298887 NA non-coding CI01000086 null 256348 ~ 257472 (-)