XLOC_002650 (hdhd2)


Basic Information

Item Value
gene id XLOC_002650
gene name hdhd2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 14525184 ~ 14540443 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004924
GTTCATCTTTCAGTATGGTTTGATGTGTGTTGTAAATGATGGCTCGCCGCACACTAAAAGCAGTTCTCATTGATCTGAGCGGGACTCTTCATATCGAGGACACTGCAGTTCCTGGTGCACAAGAGGCTTTAGCGCGATTAAGACAGGCTCCAGTTGCTGTCAAATTCGTGACCAATACCACAAAGGAATGTAAAAGGACGTTGTTTGAGCGTCTGCGTGGGCTGAACTTTGACCTCCAGGAGCAGGAGATCTTTACATCTCTCACTGCCGCACGTAATCTAGTGGAGCAGAAAGCAGTGCGCCCCCTGCTGATGGTGGAGGACAGTGCTCTGGAGGACTTCACAGGTTTGGAAACTTCAGATCCTAATGCAGTTGTAATAGGATTAGCGCCTGACCACTTCAACTACCAGACACTCAACAAAGCCTTCCAACTCATTTTAGATGGTGCCCCCCTGATTGCCATCCATAAAGCACGATACTATAAAAAGAAGGATGGTTTGGCTTTGGGACCAGGCCCATTTGTGACTGGATTAGAGTATGCCACTGACACAAAGGCCACAGTTGTGGGTAAACCAGAGAAAGGCTTCTTTCTAGAGGCCTTGCGAGATCTCAACTGCTCACCAGAGGAGGCTGTGATGATCGGAGATGATGCCAGAGATGATGTTGGTGGGGCTCAGAATGCAGGGATGCTGGGAATTTTAGTAAAGACTGGTAAATACAGACCTGCTGATGAGGGTAAAATTAACCCACCACCTCACCTGACATGTGCCAGCTTTCCAGAGGCAGTCAATTATATACTTGATCATCTCTTAGGATCTAAATAAGTTAGGTTTAAAACAATACAAAGGCAAAACAAAGTAATGGTACCCTTATGTAGCATGTACATTATATTGGTTATCTGAGAAAAATATTATAGATTAATAAAGTTGATGTAttcctttaaaatttaaagagcaagacgtgtgtttttttattttttatttcagcataTAATCAAAATTGTATtgaccttttaaaaatgtattaatcaatgaaagcaatttttttttgttatttactttaatatatattGTCAGTTAATTGATTGCagtttaaagaaaaacaaaacaagaaaaaatagtacaaaagtaggcAGTAAATGGTGGATGTGCAATAAAAAGCATTAGTTTGGtgcaggggcgttgctagggtcgaaagggataaggggcttagccccaaagacaCCCCAATCCACCCCcattaaaaaagctaaaatacCACCACTTTCATAAGGTAATCTACTTTTATAATAGAtttataaatggtttaataataaaaagggtttttgagttgacagttttttaaaaataaattttgaagctttgtgacttgtaacaccaaaaaggaaaaaaaaaaaacattgataaattatcacacttctcatttactagtctgttgtgagccatatcatacctcttgagcctcctatctcctctcctgatttgcagtttctgtttgttttttgaaaatgtaattttctgcatgtcttcaaatctgaaaataatataaattttatagTGTGAGTTAGTATCCAATttgatacaaagctacaaacatgttcagttggacagagtgattaactgaggtgtagtgttgtcaaaatACTGAAATTTCTAAAgtcaataccttgcaaaatattgatattcaataggctactatttttgacataataacaattttatcaaaaatagtacaaaaaataaaaataaagatttatatgctagaaatgcgtttacttcaaatttctttagagggagattttttttcagttttcctcaaaataatgtgatgtgggcattgtagcactttaaaagcgtgtaatgcctgtttcattcattcattgagcagaaattccatatatgcctcacaaaagtagtagaacattccaggaaatccttaatatggatgaaggcatccagctattgctgtagttgaatgaaaataagatctgaataaacataaaaaggctttaactgatcatttacacgactgcgataataaatgtttatacagttaaagtcagaattattattcccctttgaattttattttcttatttaaatatttcccaaatgaagtttaacagaacaaggaaatttccactgtatgtctgacaatatttttttcttttgaataaattcttatttgttttatttcagctagaataaaagctatattacattttttaaaaacccttttagggtcaaaattattagcccttttaagcaaattttttttctgatagtctacagaacaaaccatcgttatacaacaactcgcctaattaccctaaccttcctttaaaggtcactttaagctgtatagaagtgtcttgaaaaatgtctagtcaaatattatttactgtcatcatggcaaagataaaataaatcagtaattagagatgagctattaaaactattatgtttaaaaaaaaggtgttgagaaaatctctccgttaaacagaaattagggaaaaaaataaacaggggggctaataattcaactgtctTCTTCCAGCCATCTCAGGTATTtttataagaaagtcgatttataatcccCTGCTAACTGACAtggcatgttacagtagaatgcTATACAATAtgctagatcacaggtgtcaaactcagttccaaaagggctgcagctctgtacagtttagttccaaccctaattaaacacacctgatcaaactaattgagtccttcaggcttgtttgaaacctacaggtaagtgtgttggagcagggttggaactaaactgtgcagggcttcggccctccagggattgagtttgacacccctgtgctAGATGCATGaaccaccgcggtgactgaagctctgcacaagacttttggccagcggagaaattaaaatggtcgtgccgaactgagtctggttctctcaagttttttttttctacactcccatcaggtgaagttttttttccctctccgctgtcgccactggctcgcattgttcaggattggtagagctacgcatcgatgaatttgctcttcagtgtttgaactctcagtaatgattaaatcacactgaactgagctaaactgaactaaactgaacttaaacactaaaaaaatgaactacactgttccagttactatgaccatttatgtgaagctgctttgacacaatctacattgtaaaagcgctatacaaataaagctgaattgaattgaatgaactcactgtgatttaactattacagaaacagatgtgactggctatatcatatctagataaatatgcctagatatctatatcatatttAGAAAGCAAGAACAATTTAAGTTTTTCTGACTAATTCGCATGTATGCATTGAAATGATGCACATTTTAtggattacagttattttatttcaccaaaactacacacattttatactgtggaaacaacTGTTAAGCTTCATCAGaagttagaactattcagtttcgtgaaagagttgtattattaccttaTTAGCTCAGCTCttcataataatgaataaatgaagtgcagtggcggaattttttttaaacatcctgtgacaacagtgccactcccacctgccggtagatacaggtactgctgaactGCTGACCCGACACAAACACTGCGTTAAGTGGAATGTGCGTGATGTACAGTACGCGGTAATTTTCAGTACTTATATAACAAAATGAATGTTATAcaccatatttttatttatgctttttttatttatgcttttgacaCTACATCatgggcttaagcccccaaagcccctcCCTCGCAACGCCACTGGTTTCGTGCCTAGCTGATGTTTCAGACAGACTCATACTCTTTCTCCCAGGCTGTGTATCTATCCATCAGACATCTGGCTGATGGTTTGGTGTGAACAATCACGTCCAGGAAATCTGCTGTGGTCACAGTTTCTAGTTCAATAACCGGCATATTGGACTGACCTGTGAAGATGCATGGCGTAATGGAGACTGTGAATTGTGGGCGAAACAGGATTTCGTGATGAAACAGCAGTTTAATGTTGTTCAGAATGGGATGGCGGGATATTTCTTACCTTCAATGTGGTTTTCAAGGGCGTCAAATATTTTGCGCACAGGTCTCATAGCTGCCTCCTTACAGACCAACCTGATATCTGACCCAGAGTAACCTCCCGTCTCCTGAAATACAGAAGATCTAAAATTGTCAGTATAtttgcctgtctgtctatctgaaTGTCTGTAAGTTATTGAGTGTTTTTCTATCTGTTCAACTGTCTGTCTCTACCTCTCAATTTTTAATTCAGGTGTTTCAATTGGACCCATTGCCACAGGTATATACAGTAAAGAAATTAGCTATTTAGGCTACATCCACACAAAACCCCtatcaaaattagttttttttttttttttttttttgcatagtctTAAAAATATCTGCATACACATGAAACCACTGAACCTAACAAAAATGATGTAATATAcattagtgtttctcaaccacgttccaccAACACTGCTGaatatgttttggatgtctccagGCCcgaattggctaatcgggaggactgagagaattcccggtgggccggtccgttttttggccgcgagggccggtgtccctagctccagaatctgttgctctcagcagtcacactttttaaatttatttatttacttgaccacagcctttttattgattattttaccgTAATCATCATTCATAAAACAGTTGTTGTGGTCGagcggttagcacgttaggttaagggtgctttcacacctacacttttgtttcgaaacgtgtctcgtttgcccagttagcgcggttcatttggcatatgtgaacagggcaatcgtgctctgttccgcgccaaagtaatcgctccgagatcgcttgaacgaggtggtctcggctcgattaaaacgaACCCTGGGGCagttcgattacagtgagaaagcgatctgatccgagcgcagttatatcacagtgttttatggatatgtaataggcttacggctatatgaagagagaattatgattatggcgggaagttttgcgagtctccggatgcccgcaaacgagtgatgatctcccggtaatctcgcgtctccctcccggtcctcaaataggcatcgtcgcacacccttctcacccctccccaccgcatctctcctcagacacatcgcgcgcgcaccctgtcaatcaccatcaaaccaccacctctcctgacagcttagcgggacgctgcaaaataaaccctgacactctgaccaatgtaaggagagtttactcgcacgtgacttgttttagctcttttggtctgattagaaactttgcagtgtgaaagcgaaccgctccaagagcaaagagcaacaatgtaacatttgtaatctctgtttcggaacaactgaatcgattcacaggtgtgaaagcaccctaagacgcCGCGGACCtgggttcgatcctcgttagagtaatttagtgttttatgttgataagacatataatactgttagggttgttgaacatttgatgttctaaagcagctgttttctcaaaaaaa
>TCONS_00004925
ACAGAAAGGACCCCAGAAGGAAGTTCATCTTTCAGTATGGTTTGATGTGTGTTGTAAATGATGGCTCGCCGCACACTAAAAGCAGTTCTCATTGATCTGAGCGGGACTCTTCATATCGAGGACACTGCAGTTCCTGGTGCACAAGAGGCTTTAGCGCGATTAAGACAGGCTCCAGTTGCTGTCAAATTCGTGACCAATACCACAAAGGAATGTAAAAGGACGTTGTTTGAGCGTCTGCGTGGGCTGAACTTTGACCTCCAGGAGCAGGAGATCTTTACATCTCTCACTGCCGCACGTAATCTAGTGGAGCAGAAAGCAGTGCGCCCCCTGCTGATGGTGGAGGACAGTGCTCTGGAGGACTTCACAGGTTTGGAAACTTCAGATCCTAATGCAGTTGTAATAGGATTAGCGCCTGACCACTTCAACTACCAGACACTCAACAAAGCCTTCCAACTCATTTTAGATGGTGCCCCCCTGATTGCCATCCATAAAGCACGATACTATAAAAAGAAGGATGGTTTGGCTTTGGGACCAGGCCCATTTGTGACTGGATTAGAGTATGCCACTGACACAAAGGCCACAGTTGTGGGTAAACCAGAGAAAGGCTTCTTTCTAGAGGCCTTGCGAGATCTCAACTGCTCACCAGAGGAGGCTGTGATGATCGGAGATGATGCCAGAGATGATGTTGGTGGGGCTCAGAATGCAGGGATGCTGGGAATTTTAGTAAAGACTGGTAAATACAGACCTGCTGATGAGGGTAAAATTAACCCACCACCTCACCTGACATGTGCCAGCTTTCCAGAGGCAGTCAATTATATACTTGATCATCTCTTAGGATCTAAATAAGTTAGGTTTAAAACAATACAAAGGCAAAACAAAGTAATGGTACCCTTATGTAGCATGTACATTATATTGGTTATCTGAGAAAAATATTATAGATTAATAAAGTTGATGTAttcctttaaaattt

Function

symbol description
hdhd2 Predicted to enable phosphatase activity. Predicted to be involved in dephosphorylation. Orthologous to human HDHD2 (haloacid dehalogenase like hydrolase domain containing 2).

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016791 phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-37 Predicted to enable phosphatase activity. Predicted to be involved in dephosphorylation. Orthologous to human HDHD2 (haloacid dehalogenase like hydrolase domain containing 2).

Ensembl:

ensembl_id ENSDARG00000024728

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004924 False 5571 mRNA 0.39 6 14525184 14536399
TCONS_00004925 True 970 mRNA 0.45 7 14529807 14540443

Neighbor

gene id symbol gene type direction distance location
XLOC_002649 galt coding downstream 36666 14263684 ~ 14488518 (-)
XLOC_002648 BX000705.1 coding downstream 593488 13931569 ~ 13931696 (-)
XLOC_002645 cntfr coding downstream 752323 13460130 ~ 13772861 (-)
XLOC_002647 BX293994.1 coding downstream 912936 13612133 ~ 13612248 (-)
XLOC_002646 BX293994.2 coding downstream 918041 13607027 ~ 13607143 (-)
XLOC_002651 ier3ip1 coding upstream 2283 14542726 ~ 14545658 (-)
XLOC_002652 skor2 coding upstream 7498 14547941 ~ 14556978 (-)
XLOC_002653 CT027820.1 coding upstream 191840 14732283 ~ 14732399 (-)
XLOC_002654 smad2 coding upstream 330693 14871136 ~ 14943281 (-)
XLOC_002655 si:dkey-88l16.2 coding upstream 395602 14936045 ~ 14940346 (-)
XLOC_002643 CR759894.1 non-coding downstream 1220001 13305065 ~ 13305183 (-)
XLOC_002642 NA non-coding downstream 1223211 13298839 ~ 13301973 (-)
XLOC_002656 NA non-coding upstream 490563 15031006 ~ 15042748 (-)
XLOC_002657 NA non-coding upstream 492529 15032972 ~ 15034960 (-)
XLOC_002660 CT027832.1 non-coding upstream 541967 15082410 ~ 15086297 (-)
XLOC_002666 NA non-coding upstream 1176296 15716739 ~ 15724104 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_03997982_04001803 HDHD2 coding CI01000304 null 3997982 ~ 4001803 (-)