Fish Transcriptome and Expression Database

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model fish

XLOC_026500 (CABZ01012959.1)

Basic Information

Item	Value
gene id	XLOC_026500
gene name	CABZ01012959.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007114.7
NCBI id	CM002887.2
chromosome length	62628489
location	33344076 ~ 33345247 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051648
AGTAATGTGAAGTTGCAGCAGGTTCAACAaagaatatatatttgtatgtatctTGTAAGATGCCCATCTAAACATTAGCTAAAAGTATATGCTAATGGTTAAGGTGGGAAAAATTCACGAGCTATTCCAGATTCTATTACCACACATCTAAACAAATCCATTTACTCCAATACCCGCTAAATCAGG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000098119

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00051648	True	186	lncRNA	0.34	2	33344076	33345247

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_026499	NA	coding	downstream	39953	33300194 ~ 33304123 (-)
XLOC_026498	rarab	coding	downstream	84455	33065613 ~ 33259621 (-)
XLOC_026497	CT583642.1	coding	downstream	312277	32979969 ~ 33031799 (-)
XLOC_026496	CT583642.2	coding	downstream	362646	32977861 ~ 32981430 (-)
XLOC_026495	casp6b.2	coding	downstream	370522	32969204 ~ 32973554 (-)
XLOC_026501	si:dkey-283b1.6	coding	upstream	43776	33389023 ~ 33395233 (-)
XLOC_026502	abi3a	coding	upstream	50695	33395942 ~ 33417826 (-)
XLOC_026503	ccdc103	coding	upstream	74967	33420214 ~ 33422738 (-)
XLOC_026504	rpl23	coding	upstream	78739	33423986 ~ 33427803 (-)
XLOC_026505	CR396582.3	coding	upstream	78945	33424192 ~ 33424328 (-)
XLOC_026483	NA	non-coding	downstream	740885	32598644 ~ 32603191 (-)
XLOC_026481	NA	non-coding	downstream	772024	32565194 ~ 32572052 (-)
XLOC_026477	NA	non-coding	downstream	1006381	32325134 ~ 32337695 (-)
XLOC_026474	NA	non-coding	downstream	1121991	32185899 ~ 32222085 (-)
XLOC_026509	CU695077.1	non-coding	upstream	336271	33681518 ~ 33690754 (-)
XLOC_026511	NA	non-coding	upstream	573319	33918566 ~ 33919195 (-)
XLOC_026513	BX510335.1	non-coding	upstream	603422	33948669 ~ 33948788 (-)
XLOC_026529	BX649502.7	non-coding	upstream	677918	34023165 ~ 34023613 (-)

Expression

Co-expression Network