XLOC_026502 (abi3a)


Basic Information

Item Value
gene id XLOC_026502
gene name abi3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33395942 ~ 33417826 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051650
atagctgtgtgtgtgtgtgatgacagaggaaggctgtggcgGATGAGCTCTGACTGACAAGACTGAAATCAGTCGGCTAACTATCGCAGGGAAGTTTCCGGAGTTGTTCTTGAACAACTTGAGTTGTTCAATCCAGGGCGCAATGAAGGATCAAAATTACAGCGATGAAATCACGAAAATACTGGAAGAGGCTCCCACTGCCCGCAAAGCACTTTTAGACAACTACGACAACTTGCACAAAGTAGCGGAGTACTGCGAGAACAACTACCTGAAGTCTGGAAATGACAGCAACAAAGCTCTGGAAGAGACCAAGGCCTTCACCACCCAGTCTTTGGCTAGTGTGGCCTATCAGATCAGCTCTCTGGCCACCAATGTGCTCAAGCTACTGGACGCACAAACCCTTCAGCTCCGCAAGATAGAGTCCTCTGTCAACCAGATTGGACAGACAGTGGACATGCACAGGGAGAAGGTGGCCCGCAGAGAGATTGGTGCATTTACAGTTGGGAAGAGGGTTCCTCGCAATCATAAAGTTGTTCCACCAGCAAAAAACAAAGAAGCCAAGCTAAAGTACACCCGCACACCCATCTCTTTCTCTAGCTTGGACTCTGTTGGCCATGGAGTGAAGGATTCTGGCCAACCACAGTTAAAAACGGCTACCATGTCGCGCAGCGGCAGCATACTGAGTCGAGGCGGTCGTCCTCCAGAGCCAGTCCAGTGTCCTGTGGCCCCCAGTCTGTCTCATGGAGCATCACTGACCTCACTCAACGACAAGTCTATCACTTCGAGTTTTGGTATAGCTGTGCCACCTCCTGTAGTGCCCAGCTGGCCCACCAGCCCTGATAGTGACATCATCGGCACACTATCGGAAGAAGTGCGGGAAGAAGGACCACCGCCTCCACCCCCAATGATGGAGGCAGAGGGTGAAGTGAATCATGCGCAGGAGGCCGCTCCACCAGCTCCACCACCACCTCCACCTCCTCCCATGGATTGTCCCAACAGCATCCCCCCGCCTCCTCCAATGCCCATCTCATCTACACCTGAACCAAGCAGCATGATGGCCATACCACCTCCCCCTCCTGCTCCACCTCTTGAAACAGTGGCTGAGGAGATTGGCTTTCCTCCACCTGAAGCTCTCGGTGACATGCCTCCTCCACCAGCCCCTGATGGCATTGATCTTCCAAGCCCACCACCTCTGCCTGGAGAGGAAAACATCGAAGATCTTGAGATTCCAGCACCGCCCCCTTCACCACCACTAGACGATTTTGACAGCTATGAGGAAATGCCCCCTCTGCCTCCCCCTATTGACTATGACATGTCAGCACCAGTCGACTATCTGGAGAAAGTGGTGGCACTATATACATATGACACAGGCAAGCCGGGTGACCTGGTGTTTCAGGAAGGGGACATCATTTACCTCACCAGCAGGAATGAGGACGGCTGGTGTGAAGGGGTCCTGAACGGAGTTAAGGGTTATTTTCCTGGCAACTATGTGGAGTCCACTGCTTGAGTCCACTGCTTGACCGGCCATATGTTTTTACAATGTCACTGAGCAAATTATTTGAGACCCGAAGCACCTTCATTTAACATTTTGTCAAGTGAATCTGTTTAGTTATATTGGCTGTACTGAGCTCCTTTTTGTTGTAGTTCTTGTTCTCAAACATCACAAAAGCTACTAACATGCTGACCGATGTTCCCAGCAAAGATGAGCTTGCGTTTATGAAAATACCCTGTCTCAAGTTTACTCTGGTTTTAAGAATAATGATCATTTATCTCTCAGGACTTTAAGTTATAATCTCAATGTACGACATATAAAGAAACATTTTATGTGCATTTCAGATGTATTTGATCTATTAAGATTATAAATGAATTCATATTTTAGTTTGAATAGGTTTTTATGcagagtaaatataatataaaataatatatttgtgtaatttaatttagtttcctAATTAACATTTATTGCTTGTGATCAGTTTATAACATTTCTTAGATTCCCTTTTGCGAATATTGTATTTAACAATATTTGTACTGTGGTGAGTTAAGGAAATCTGTTAATGTGCACCAGCTCACGTCACTGTTTTATGGTACCAAGTTAGCTTTTACAGTCCACAGGCTTTTTGATCTGTTCATTTATAATGAACAGGCTCATCTgtcttattttttacttttctaaaCTGTTACACAGTTGTCTATTTCATGTTGaggaaatgtataaaaatttctttgatgtaaatgtgtgtctctttgttttacaaaaatgaaAGAGTAATTATGGAGAA
>TCONS_00051651
CTTGTTTTACATCCTCAACAAAATTAAATTTCTCCTGGAAATGGAAAGCTTGCAGAGGAGATGatgcatttttttgtcatttgacagCTGCTGCGAGGTGGAAAAATGTGTACATGCATGGCAGTTTCTGCTCTAATGTTGTCAATGTGTTAACGTTGTGTTTAGATCTTGAGATTCCAGCACCGCCCCCTTCACCACCACTAGACGATTTTGACAGCTATGAGGAAATGCCCCCTCTGCCTCCCCCTATTGACTATGACATGTCAGCACCAGTCGACTATCTGGAGAAAGTGGTGGCACTATATACATATGACACAGGCAAGCCGGGTGACCTGGTGTTTCAGGAAGGGGACATCATTTACCTCACCAGCAGGAATGAGGACGGCTGGTGTGAAGGGGTCCTGAACGGAGTTAAGGGTTATTTTCCTGGCAACTATGTGGAGTCCACTGCTTGAGTCCACTGCTTG

Function

symbol description
abi3a Predicted to enable SH3 domain binding activity. Predicted to be located in cell junction; cytoskeleton; and filopodium. Predicted to be active in lamellipodium. Orthologous to human ABI3 (ABI family member 3).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0030027 lamellipodium cellular_component
GO:0017124 SH3 domain binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-958 Predicted to enable SH3 domain binding activity. Predicted to be located in cell junction; cytoskeleton; and filopodium. Predicted to be active in lamellipodium. Orthologous to human ABI3 (ABI family member 3).

Ensembl:

ensembl_id ENSDARG00000060072

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051650 False 2282 mRNA 0.45 9 33395942 33417826
TCONS_00051651 True 467 lncRNA 0.47 2 33396705 33398537

Neighbor

gene id symbol gene type direction distance location
XLOC_026501 si:dkey-283b1.6 coding downstream 709 33389023 ~ 33395233 (-)
XLOC_026500 CABZ01012959.1 coding downstream 50695 33344076 ~ 33345247 (-)
XLOC_026499 NA coding downstream 91819 33300194 ~ 33304123 (-)
XLOC_026498 rarab coding downstream 136321 33065613 ~ 33259621 (-)
XLOC_026497 CT583642.1 coding downstream 364143 32979969 ~ 33031799 (-)
XLOC_026503 ccdc103 coding upstream 2388 33420214 ~ 33422738 (-)
XLOC_026504 rpl23 coding upstream 6160 33423986 ~ 33427803 (-)
XLOC_026505 CR396582.3 coding upstream 6366 33424192 ~ 33424328 (-)
XLOC_026506 si:dkey-283b1.7 coding upstream 14365 33432191 ~ 33437796 (-)
XLOC_026507 sgsm3 coding upstream 43249 33461075 ~ 33494163 (-)
XLOC_026483 NA non-coding downstream 792751 32598644 ~ 32603191 (-)
XLOC_026481 NA non-coding downstream 823890 32565194 ~ 32572052 (-)
XLOC_026477 NA non-coding downstream 1058247 32325134 ~ 32337695 (-)
XLOC_026509 CU695077.1 non-coding upstream 263692 33681518 ~ 33690754 (-)
XLOC_026511 NA non-coding upstream 500740 33918566 ~ 33919195 (-)
XLOC_026513 BX510335.1 non-coding upstream 530843 33948669 ~ 33948788 (-)
XLOC_026529 BX649502.7 non-coding upstream 605339 34023165 ~ 34023613 (-)

Expression


Co-expression Network