XLOC_026503 (ccdc103)


Basic Information

Item Value
gene id XLOC_026503
gene name ccdc103
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33420214 ~ 33422738 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051652
GTTTGTTGTGGAGGCGTGAGCTAGAGAGTTAGCGTTACTGGTCAGCTAAACGAAGACGCTGACGACTTTCTGAATTTAGAGGTAAAACAGTTTTCATACTCCTTCAAGAAGTAAATTGGGTGGCTCTTTGTGGTCATATTTGTCGATAAACAAAGCAGGAATGGAGAACTCTGATGTGATAAATTTCAGTTGTCTTGAAAAAGAGCTACACTCGGCGCTGCAAGCGGACAGAAAATACCAGAGGGAAAATGATGCCAAGTTTCGTGCTCTGAACCAAAAGGTCGCCAGCTACGAAGAATTCAGaGACATTGTTCTCGCATCTCATTTGAAACCACTTGATCGAAACGACATCTCTGGTTCACCCCGAAAGCAGCCATGGAATCCAGTTGCTTGTAGGACAAATTATGTATGTGCTTCTTCTGAGCAGGTCCAGCCACAATTATCTGAGGTCCAGCCAAGAAGTGCATCAGAGTTCATCCGTGACTGGCGCAGGTTTGCAGGATGCTCATTTGAAAAGTACAGTCTCCTTGTAAGTCTGGGAGGAGAGGCGCTACAAAAAATCTTCAGCACAGAGATTGGCCTCGGTCTTCTGGGAGAGTTCCTACTGATTCTGTCTCAGTGTCTAAAGTCAGGGGATGAGGACAGAGTGACTGGAGTGCTGGACGGCCTTTCCAAAACAGGCCGCTTTTCCATTAACCTGTCTCTTCTTAGTCAGGCGGAACAAGAAGCCTGCGAGGAGCTTTTCAACAAGCTAAAAGTTGCAGCCGGCGAATGTCATCCATATAAAGATAATTCAAACACTTCAGTTGTTTGTGAGGCAGGTCTGACACACATGGAGGATAACAAGACTGACATTACAACAACACTTAAAGAATTAGCAGGAAAATATGGCACTGAAAAATAGTTTATACTAAAACAAATCTATTAGTTTCTTCAGTTTCATATTctctttgttgtttgttgttgttagttTTCAGGCAAAATATGTTAAAAGTGCAAGTCCTTTACTTTTGGTCCATCTGCCCATTGTTACTTTTAGCTTATGAAGCCCCTCAGGATAAAGAGGACATCTTTGCGAGGAAGGCCTGTCCTGCATTTCTTGTCTTTGACACTGTGGCCTTCCTTTCTGACATGACCGTCAATCTTTCTTGTCGCTGCAAACCAGAGGAGATGCATTCAGTGGTGTGGTACTATCAAAAACACATCGGCTCCATGAACACCAAAGTCCTCACAGACTATGCAGGAACTGCAGTGGTGGAATCCTCCAAGGTTGGCAGAGGGTCAGATCTGCGTAGTCGCTTTTCCATCCGCTTGTTTAGCCTTCTCATCTTCAGGGTTCAGAAAGCTGACTCGGGCCACTATATCTGTGGcacggcctctggtgaattcttCTACGGCTACGATGTTGACGTCCAGGTGGTCCGACACGTTTTATTTCCCTGGAACCTCAATCGGAGAACTCAAGCAGAGGATGCAGAGATGTTTCAGGTGTTCACTCGGCACCAGTCATGGTCTAAATGTGACCGTTGTGACATCCAGGGTGAGCAGACCCGTGTAGGATTTTGTTTTGTCAAAAGCATCTACCTTCAGGTACGTTATCAGAGTGATTCAGAGACAGAGGCTCCCTGCGGTTCCCCAGCTGTTCCTTTACAATTTGGCATTTCAGGCAGCAGCTACGGAGCTGAGCTTGAGGTGAGGGACTGTCATGCCACCTGTCCTCCAAAACCTAAAGTATCTCCAGAGAGACAAGCTCTAATGAAGTTCCTTGAGATTGAAGATCAAGCTTCTTCAGGGGTTTCCATCCACTTCTACAACCACCCCACAGACTCTGATCTGGTCCTGATTTGTCCTGGTGCCAAACCGCAGTATGCAGTGGCCTGGGATAAAGGCTCAAAGCCGCTTTATCTATCTCAGTATATGGAGGGGCTGAATAGGACGTCTCGGGTCTTCATTGACAGCGGTCACCATCTACACTTCACGCCTGTGCAGCTGGAAGATAAAGGCTCCTATTTCTGTTGGATCCAAGGAGAACTGGCTGCAGAGATCAGATTAGGGGTGTATCTGCGTTTGGGACGTTTGCGACAGATCTTCGACCCAGAGTCCATCTATGCTCTACGACTTATTTTCATTTGCTACATTGGCATTACTGCTGTGTTTATCCTCACAGTGTTTGTCAGatttatttttcagataaacaagacaGACACATCTGCTGACATTGACTGAATTTGAATGTGCTGTAGTTTGATTTGTGATGTCAAACAATTAAAcgctttttttactttatataa
>TCONS_00051653
GTTGTGGAGGCGTGAGCTAGAGAGTTAGCGTTACTGGTCAGCTAAACGAAGACGCTGACGACTTTCTGAATTTAGAGTTGTCTTGAAAAAGAGCTACACTCGGCGCTGCAAGCGGACAGAAAATACCAGAGGGAAAATGATGCCAAGTTTCGTGCTCTGAACCAAAAGGTCGCCAGCTACGAAGAATTCAGaGACATTGTTCTCGCATCTCATTTGAAACCACTTGATCGAAACGACATCTCTGGTTCACCCCGAAAGCAGCCATGGAATCCAGTTGCTTGTAGGACAAATTATGTATGTGCTTCTTCTGAGCAGGTCCAGCCACAATTATCTGAGGTCCAGCCAAGAAGTGCATCAGAGTTCATCCGTGACTGGCGCAGGTTTGCAGGATGCTCATTTGAAAAGTACAGTCTCCTTGTAAGTCTGGGAGGAGAGGCGCTACAAAAAATCTTCAGCACAGAGATTGGCCTCGGTCTTCTGGGAGAGTTCCTACTGATTCTGTCTCAGTGTCTAAAGTCAGGGGATGAGGACAGAGTGACTGGAGTGCTGGACGGCCTTTCCAAAACAGGCCGCTTTTCCATTAACCTGTCTCTTCTTAGTCAGGCGGAACAAGAAGCCTGCGAGGAGCTTTTCAACAAGCTAAAAGTTGCAGCCGGCGAATGTCATCCATATAAAGATAATTCAAACACTTCAGTTGTTTGTGAGGCAGGTCTGACACACATGGAGGATAACAAGACTGACATTACAACAACACTTAAAGAATTAGCAGGAAAATATGGCACTGAAAAATAGTTTATACTAAAACAAATCTATTAGTTTCTTCAGTTTCATATTctctttgttgtttgttgttgttagttTTCAGGCAAAATATGTTAAAAGTGCAAGTCCTTTACTTTTGGTCCATCTGCCCATTGTTACTTTTAGCTTATGAAGCCCCTCAGGATAAAGAGGACATCTTTGCGAGGAAGGCCTGTCCTGCATTTCTTGTCTTTGACACTGTGGCCTTCCTTTCTGACATGACCGTCAATCTTTCTTGTCGCTGCAAACCAGAGGAGATGCATTCAGTGGTGTGGTACTATCAAAAACACATCGGCTCCATGAACACCAAAGTCCTCACAGACTATGCAGGAACTGCAGTGGTGGAATCCTCCAAGGTTGGCAGAGGGTCAGATCTGCGTAGTCGCTTTTCCATCCGCTTGTTTAGCCTTCTCATCTTCAGGGTTCAGAAAGCTGACTCGGGCCACTATATCTGTGGcacggcctctggtgaattcttCTACGGCTACGATGTTGACGTCCAGGTGGTCCGACACGTTTTATTTCCCTGGAACCTCAATCGGAGAACTCAAGCAGAGGATGCAGAGATGTTTCAGGTGTTCACTCGGCACCAGTCATGGTCTAAATGTGACCGTTGTGACATCCAGGGTGAGCAGACCCGTGTAGGATTTTGTTTTGTCAAAAGCATCTACCTTCAGGTACGTTATCAGAGTGATTCAGAGACAGAGGCTCCCTGCGGTTCCCCAGCTGTTCCTTTACAATTTGGCATTTCAGGCAGCAGCTACGGAGCTGAGCTTGAGGTGAGGGACTGTCATGCCACCTGTCCTCCAAAACCTAAAGTATCTCCAGAGAGACAAGCTCTAATGAAGTTCCTTGAGATTGAAGATCAAGCTTCTTCAGGGGTTTCCATCCACTTCTACAACCACCCCACAGACTCTGATCTGGTCCTGATTTGTCCTGGTGCCAAACCGCAGTATGCAGTGGCCTGGGATAAAGGCTCAAAGCCGCTTTATCTATCTCAGTATATGGAGGGGCTGAATAGGACGTCTCGGGTCTTCATTGACAGCGGTCACCATCTACACTTCACGCCTGTGCAGCTGGAAGATAAAGGCTCCTATTTCTGTTGGATCCAAGGAGAACTGGCTGCAGAGATCAGATTAGGGGTGTATCTGCGTTTGGGACGTTTGCGACAGATCTTCGACCCAGAGTCCATCTATGCTCTACGACTTATTTTCATTTGCTACATTGGCATTACTGCTGTGTTTATCCTCACAGTGTTTGTCAGatttatttttcagataaacaagacaGACACATCTGCTGACATTGACTGAATTTGAATGTGCTGTAGTTTGATTTGTGATGTCAAACAATTAAAcgctttttttacttta

Function

symbol description
ccdc103 Acts upstream of or within axonemal dynein complex assembly; cerebrospinal fluid circulation; and embryonic heart tube morphogenesis. Located in axoneme. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; otic placode; peripheral olfactory organ; and spinal cord neural tube. Used to study primary ciliary dyskinesia. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 17. Orthologous to human CCDC103 (coiled-coil domain containing 103).

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0003351 epithelial cilium movement involved in extracellular fluid movement biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0003146 heart jogging biological_process
GO:0070286 axonemal dynein complex assembly biological_process
GO:0036159 inner dynein arm assembly biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0030030 cell projection organization biological_process
GO:0001947 heart looping biological_process
GO:0031514 motile cilium cellular_component
GO:0042995 cell projection cellular_component
GO:0036157 outer dynein arm cellular_component
GO:0005929 cilium cellular_component
GO:0005930 axoneme cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-040718-253 Acts upstream of or within axonemal dynein complex assembly; cerebrospinal fluid circulation; and embryonic heart tube morphogenesis. Located in axoneme. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; otic placode; peripheral olfactory organ; and spinal cord neural tube. Used to study primary ciliary dyskinesia. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 17. Orthologous to human CCDC103 (coiled-coil domain containing 103).

Ensembl:

ensembl_id ENSDARG00000053455

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051652 False 2291 mRNA 0.45 3 33420214 33422738
TCONS_00051653 True 2174 lncRNA 0.46 4 33420219 33422734

Neighbor

gene id symbol gene type direction distance location
XLOC_026502 abi3a coding downstream 2388 33395942 ~ 33417826 (-)
XLOC_026501 si:dkey-283b1.6 coding downstream 24981 33389023 ~ 33395233 (-)
XLOC_026500 CABZ01012959.1 coding downstream 74967 33344076 ~ 33345247 (-)
XLOC_026499 NA coding downstream 116091 33300194 ~ 33304123 (-)
XLOC_026498 rarab coding downstream 160593 33065613 ~ 33259621 (-)
XLOC_026504 rpl23 coding upstream 1248 33423986 ~ 33427803 (-)
XLOC_026505 CR396582.3 coding upstream 1454 33424192 ~ 33424328 (-)
XLOC_026506 si:dkey-283b1.7 coding upstream 9453 33432191 ~ 33437796 (-)
XLOC_026507 sgsm3 coding upstream 38337 33461075 ~ 33494163 (-)
XLOC_026508 ELFN2 coding upstream 147845 33570583 ~ 33574576 (-)
XLOC_026483 NA non-coding downstream 817023 32598644 ~ 32603191 (-)
XLOC_026481 NA non-coding downstream 848162 32565194 ~ 32572052 (-)
XLOC_026477 NA non-coding downstream 1082519 32325134 ~ 32337695 (-)
XLOC_026509 CU695077.1 non-coding upstream 258780 33681518 ~ 33690754 (-)
XLOC_026511 NA non-coding upstream 495828 33918566 ~ 33919195 (-)
XLOC_026513 BX510335.1 non-coding upstream 525931 33948669 ~ 33948788 (-)
XLOC_026529 BX649502.7 non-coding upstream 600427 34023165 ~ 34023613 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_04595809_04598174 NA coding CI01000069 null 4595750 ~ 4598174 (-)