XLOC_026504 (rpl23)


Basic Information

Item Value
gene id XLOC_026504
gene name rpl23
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33423986 ~ 33427803 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051654
CTAGACTGCGCAGAGCTGTtgtcctccaggaactgagtttggcaCTTTTAgaaaattatagttttgtaatatTACCATGAGATGCTGAAGTGAATCAAGTCATACATACGACACACTAGATGGCGATGCTTTAGTTATGACGATGACGTGACGCCGGAAGCTGTGAAGTCTGTGGTGCGCGCACGCTTATATCCCATCATTCCTTTCTGTCTCTTCCTCTTTCCCTTTCAGCGACTATGTCTAAGAGAGGACGTGGTGGGTCATCGGGAGCCAAGTTCCGCATCTCACTGGGTCTCCCAGTGGGAGCGGTCATCAACTGCGCTGACAACACAGGTGCAAAGAACCTGTACATCATTTCCGTCAAAGGCATCAAGGGTCGTCTGAACAGGCTGCCTTCCGCCGGTGTGGGTGACATGGTTATGGCCACAGTGAAGAAAGGCAAGCCAGAGCTCAGGAAAAAGGTGCATCCTGCGGTGGTCATACGACAGCGGAAGTCGTATCGGCGAAAAGATGGCGTGTTTCTATACTTTGAAGACAATGCTGGGGTCATAGTGAATAACAAAGGAGAAATGAAAGGCTCCGCCATCACAGGACCTGTAGCCAAGGAATGCGCAGACCTGTGGCCCAGGATTGCTTCTAATGCTGGCAGCATTGCCTGAGCACACATTTTGGCTTGTCGTTTTCAATAAAGTACTCAAaagtg
>TCONS_00051655
CACAAGTTCAAAGCTTGTGTCGTTTAATTTATCAAGTTGACAAGTCTAGGCAGAATAAGTTGTCTTCATTCGTTTTCATTTAACTTACACTTTAACTTATAGTTACTGGTGTTGAcattttcaatagtttttttttcccaatgttttatttcataattggaagtgaatgaatgaattgttgctCCTTTGGCGAGTTTTTGTTTTAGATATGCTAGGTGTTTTGATAGATTTATGGAGTCAGGTTAATTTAGCCAGTGTGCTACTCATGTATTATCTAAAATTTAAACCTAGTCTATATTTTGGTggttttgctgtttttgtgtattttattaattttggtcCTCCTGTTTAGGACGTGGTGGGTCATCGGGAGCCAAGTTCCGCATCTCACTGGGTCTCCCAGTGGGAGCGGTCATCAACTGCGCTGACAACACAGGTGCAAAGAACCTGTACATCATTTCCGTCAAAGGCATCAAGGGTCGTCTGAACAGGCTGCCTTCCGCCGGTGTGGGTGACATGGTTATGCATCCTGCGGTGGTCATACGACAGCGGAAGTCGTATCGGCGAAAAGATGGCGTGTTTCTATACTTTGAAGACAATGCTGGGGTCATAGTGAATAACAAAGGAGAAATGAAAGGCTCCGCCATCACAGGACCTGTAGCCAAGGAATGCGCAGACCTGTGGCCCAGGATTGCTTCTAATGCTGGCAGCATTGCCTGAGCACAC
>TCONS_00051657
TTTCCCTTTCAGCGACTATGTCTAAGAGAGGTAAGAAACACACATGAAAATCCGCAATCATCCTTAAAATGAGGAGCATTTAAGCCCCCTAAAGTAAAGCACAGGTTTATATGATCATGGAGGATGTGTATTTCACCCATATTGATGTCAATTCTGAATTTTAACTTGGATTAAAACAGAAATGTACACTTTCCGCTAGCAAGAGAAGCCATGTTTGCTAAGTACGCAGAGTGAAGCTCGTGGAGCCAGTGGTGTGATTTTGGAACTCTTCATATTTGAACCGTTTTGTTCGTAAGCAAGTTTTGGAGTAGAGCTTTATGATAGCAGCCATTTAAAATCAGTGAAGAGCAGCACTTGTGAGTAGTTAACTCTACAATATGTGGTGAAACTGGTAGACGCTCGTCTGAATGGTGGAAAGAAGTCGCACGTTTGTATGTCAGGCTAACGTGTAAACGTGCACTATTAAACCAGTGTACAACAGGTTTCCACACCAGAAATTCTCCTTGAAATGTTATCATCGTAAATATTGTGTTTGTGTTGAGTGGAATCAAGCTTGTCCGGCAGCAAACGTCTGTTCACTTGCAACTGTATCGACAGGACGTGGTGGGTCATCGGGAGCCAAGTTCCGCATCTCACTGGGTCTCCCAGTGGGAGCGGTCATCAACTGCGCTGACAACACAGGTGCAAAGAACCTGTACATCATTTCCGTCAAAGGCATCAAGGGTCGTCTGAACAGGCTGCCTTCCGCCGGTGTGGGTGACATGGTTA

Function

symbol description
rpl23 Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL23 (ribosomal protein L23).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function
GO:0070180 large ribosomal subunit rRNA binding molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-8756 Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL23 (ribosomal protein L23).

Ensembl:

ensembl_id ENSDARG00000053457

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051654 False 703 mRNA 0.49 5 33423986 33427803
TCONS_00051655 False 726 lncRNA 0.43 4 33424024 33426932
TCONS_00051657 True 768 lncRNA 0.44 3 33425545 33427584

Neighbor

gene id symbol gene type direction distance location
XLOC_026503 ccdc103 coding downstream 1248 33420214 ~ 33422738 (-)
XLOC_026502 abi3a coding downstream 6160 33395942 ~ 33417826 (-)
XLOC_026501 si:dkey-283b1.6 coding downstream 28753 33389023 ~ 33395233 (-)
XLOC_026500 CABZ01012959.1 coding downstream 78739 33344076 ~ 33345247 (-)
XLOC_026499 NA coding downstream 119863 33300194 ~ 33304123 (-)
XLOC_026506 si:dkey-283b1.7 coding upstream 4388 33432191 ~ 33437796 (-)
XLOC_026507 sgsm3 coding upstream 33272 33461075 ~ 33494163 (-)
XLOC_026508 ELFN2 coding upstream 142780 33570583 ~ 33574576 (-)
XLOC_026509 CU695077.1 coding upstream 253715 33681518 ~ 33690754 (-)
XLOC_026510 cacna1aa coding upstream 345353 33773156 ~ 33901483 (-)
XLOC_026483 NA non-coding downstream 820795 32598644 ~ 32603191 (-)
XLOC_026481 NA non-coding downstream 851934 32565194 ~ 32572052 (-)
XLOC_026477 NA non-coding downstream 1086291 32325134 ~ 32337695 (-)
XLOC_026511 NA non-coding upstream 490763 33918566 ~ 33919195 (-)
XLOC_026513 BX510335.1 non-coding upstream 520866 33948669 ~ 33948788 (-)
XLOC_026529 BX649502.7 non-coding upstream 595362 34023165 ~ 34023613 (-)
XLOC_026534 BX649502.8 non-coding upstream 607389 34035192 ~ 34035631 (-)

Expression


Co-expression Network