XLOC_026506 (si:dkey-283b1.7)


Basic Information

Item Value
gene id XLOC_026506
gene name si:dkey-283b1.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33432191 ~ 33437796 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051658
CAAATGTTCATGCGCTGCCCCGCGCGCACCATAACAAACGAGAGCCCAACATAAACAAACTGTCAGTAACGATGCTTTCTCTCGTCCTTTGCGTCCTGTTTGCACTTCAGCGCTTTGTTCTCCAAAGTGCATCAGAGTACTCGTCCAAATCCGAACTGGATTACGAATTCGGTGACTATCGAGGCAAGTTCTGCATGGACGATCAAGGATTTGTTTATGGCATCGGACAGGTTTATTACCCGGGCTCCACAGCGTGTCCATGCACCTGCACAGAGGACGGTCCCGTGTGTGTCAGACCCAAGTGCCCGCGGATACACCCGAGATGCACGCGCATCAAATACAAGTCCTGCTGTCCCGTATGTGAAGCGGTCAGTAAAGTTTGCTTGTTCCGCGGCAAAACTTACAGAGTGCTGGAGGAATTTAGGttgtcaccCTGTGAGCGCTGCCGGTGTGAAGTCAACAAAGAAGTTTACTGCACCATATCCGGCTGTCCAGCTTTGCATTGTGTAAATCCTGTATACGAACCCAACCATTGCTGTCCGGTGTGCAAAAGTGGGCCAAACTGCTTTGCTGGAAATCGCGTAATCTCCGCAGGAGAGCGTGTGGAGATTGATGAGCAGACGGTGTGTTTCTGCACCTACCGGGACGGAACGTGGCAGACGCACCATCACGCTACCTGCGAGGAGCGAGAAGACAATGAAGCCACTGACTCTGACAACACGTCCAAACAGATGGAGGAGCAGgagaaggagaaagagagagagagagtgtactGGCCCAGGCTAGATGCCATCCCGTGATGGTGTGCCTGGCACCAGCTCTCTTGACAGGCAGGAGGGGGTGCAGGTGTCTGTGCCCAGGGTAAATACAACCTGTGCTGGGACAACCGCCAATGCTGACCTCTTTAGCCAACCTCACCACCGACTCCCTCCCACAATGACCTATATCCGCAACCCTCTGAGAGGCAACACACAATAACTCTAGCACTTTGTTGCGTTACTCTCTATACCGTTGCAATCAACATTATTCAAGTCCCTTAATCTGCATTGCTGCCATAaagaaaaaattatgaaaaaggtTGAATGAAAATATAAGTTTTgaattatttcaatttaattatttcacAATAAGGGACAGCATACATTAGtggtcaaactcaattcctggagggccacgactctgcagattttagcttcaaccacctccaactcacacctgcttaatagtctctggtagtcttgattagttggatcagctgtgtttgattagggttggagcagaactgtgcagagctgcggccctccaggaatccagtttgagacctatggcgTACATTAACCAACATTCCTCAGGAGCGTGATTGTAGCCAAATTAGCCCAAAGACTAGTTTTCATTGGTAGTCCCTTTTCCAGATGTTAAAGACCTATACCAATAAAATTACAAATTCAAACTCTAAACAAAACTCAAATGGACAACAAAAAACACCCACAACAACAATAGCAAAAATACTAGTGTTTGCAACATTAAAGAACATGTAAACTACAATAAACcatttttaattacaaatttgtGCCATACTGAAAAAAATGAAGCAATCAGATTGTCTCTAAATATTCATGTGACCTTTTGTTGAGAATCTTTTATTCTTTATAACCTCTAAGTGCTTAAATCACCTCTCTGTGCTGGAGTCTTGGCCCATTCCCTTCCCCCAAAACATCAAGATGAATAATCTTTGGTTTCAACATTGCCACTGCTTTTTACCAGTTCcgccaaatatttttttataagattTGAAAGTAGAGACCATCTAGACCACGGATGGgaaatcttggtcctggagggctagtTTACagcagagttttgctccaactctaatcaaacttaactgaacatgctaatcagtgtcttcaagatcaatTGAATgctaggtgtgtttgattggggttagagctaaactctgcaggacgaCAGCCCTCCAGGGCTGAGTTTACCATAAAAAAATCCAGAATGATAAATATATCAGGCTTTCTGTGGATTTGGATGTGTTTTTACAAATGATTGTCATGCTGGAAAGCCCATCGATCATCAAGCTTGCAGTCTTTCTCAATATGGCTTGATGCAACAAAGAATCCATGTGATCCTTCATATAAATAAGACCTTCTACTTCGGCAAAGTATCCCTTAGCCTTGCATTTTTACCACAAGACAAAGAACTCACAAGACAAAGTTTGGCACATcaacccataaaacatttttCACAGAACTCCACCACTCTCTCCGaatgaaatacattttagaaaata
>TCONS_00051659
AGTAACGATGCTTTCTCTCGTCCTTTGCGTCCTGTTTGCACTTCAGCGCTTTGTTCTCCAAAGTGCATCAGAGTACTCGTCCAAATCCGAACTGGATTACGAATTCGGTGACTATCGAGGCAAGTTCTGCATGGACGATCAAGGATTTGTTTATGGCATCGGACAGGTTTATTACCCGGGCTCCACAGCGTGTCCATGCACCTGCACAGAGGACGGTCCCGTGTGTGTCAGACCCAAGTGCCCGCGGATACACCCGAGATGCACGCGCATCAAATACAAGTCCTGCTGTCCCGTATGTGAAGCGGTCAGTAAAGTTTGCTTGTTCCGCGGCAAAACTTACAGAGTGCTGGAGGAATTTAGGttgtcaccCTGTGAGCGCTGCCGGTGTGAAGTCAACAAAGAAGTTTACTGCACCATATCCGGCTGTCCAGCTTTGCATTGTGTAAATCCTGTATACGAACCCAACCATTGCTGTCCGGTGTGCAAAAGTGGTAAGAGTTTACACATGCAACATCACATGTGCATTAACAATTTACccaatttttttctaaacataatcacaTGCACCTTTTAAACTGTTGTGCAACTCTTGAGGATCAATGGAGTTACATTGGTTATTTCTTGTCTGTTGATTGATTTGTGCTCGATTACAGCATACTTCTGGGTGATGTCATGGAAAAAGAGTGATGCAACGGAACTGTTCGATAGATTGCGTACTACCATGCGGGGTATAAATAGGAACTAGATCGTGGCGTGCTGGGATGGCACAGGCACTATGGGGCATTGGGCCATCCCTGACAACAGAAGGCAAGAGCTGGACAGATTGCGTGTGATAAGTTTGTTCATGTAGAAATTAGAAAGTAATGTGTGGAGACTTCAAAGCATGCAGATTTTGGCTATGCATTTGTGCAGTCATTTTGGCAAATTTGCACATTTTGGTAAATCTAAGAAGTCGCCCTCTTAATTAAAAAgccatttaattttagttttatcttATAGTTCTAGGTTATGGTTAGGTTTAGAATACCTAAGCTTTTTTGTCAACTTAATATGATAAGATCCACATTAGAGATAAATCTAAGAggtagttaaataaaatatttgcacaCACATCACATACTCCCTATGAAAGCAGAAGTTGACTCATAATAGTGATGTGAAGGTTTGCCACACAGACACAATTTTAACTGTTCTTCATCTTAAAATCtcctctta

Function

symbol description
si:dkey-283b1.7 Predicted to be involved in negative regulation of BMP signaling pathway. Predicted to be located in extracellular region and synapse. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in extracellular space.

GO:

id name namespace
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0005615 extracellular space cellular_component
GO:0032281 AMPA glutamate receptor complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120215-126 Predicted to be involved in negative regulation of BMP signaling pathway. Predicted to be located in extracellular region and synapse. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in extracellular space.

Ensembl:

ensembl_id ENSDARG00000053460

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051658 False 2302 mRNA 0.44 3 33432191 33437796
TCONS_00051659 True 1215 lncRNA 0.42 2 33435754 33437732

Neighbor

gene id symbol gene type direction distance location
XLOC_026504 rpl23 coding downstream 4388 33423986 ~ 33427803 (-)
XLOC_026505 CR396582.3 coding downstream 7863 33424192 ~ 33424328 (-)
XLOC_026503 ccdc103 coding downstream 9453 33420214 ~ 33422738 (-)
XLOC_026502 abi3a coding downstream 14365 33395942 ~ 33417826 (-)
XLOC_026501 si:dkey-283b1.6 coding downstream 36958 33389023 ~ 33395233 (-)
XLOC_026507 sgsm3 coding upstream 23279 33461075 ~ 33494163 (-)
XLOC_026508 ELFN2 coding upstream 132787 33570583 ~ 33574576 (-)
XLOC_026509 CU695077.1 coding upstream 243722 33681518 ~ 33690754 (-)
XLOC_026510 cacna1aa coding upstream 335360 33773156 ~ 33901483 (-)
XLOC_026511 NA coding upstream 480770 33918566 ~ 33919195 (-)
XLOC_026500 CABZ01012959.1 non-coding downstream 86944 33344076 ~ 33345247 (-)
XLOC_026499 NA non-coding downstream 128068 33300194 ~ 33304123 (-)
XLOC_026483 NA non-coding downstream 829000 32598644 ~ 32603191 (-)
XLOC_026481 NA non-coding downstream 860139 32565194 ~ 32572052 (-)
XLOC_026513 BX510335.1 non-coding upstream 510873 33948669 ~ 33948788 (-)
XLOC_026529 BX649502.7 non-coding upstream 585369 34023165 ~ 34023613 (-)
XLOC_026534 BX649502.8 non-coding upstream 597396 34035192 ~ 34035631 (-)

Expression


Co-expression Network