XLOC_002651 (ier3ip1)


Basic Information

Item Value
gene id XLOC_002651
gene name ier3ip1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 14542726 ~ 14545658 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004926
GGCGGCGCGCGTATGACGTGAGTTTGTTCGCGACGCAAGCCCTTGTACGTCAGCACAGTGCCAACATGGCGTTCACACTGTACGCATTGATTCAAACAGCGATATTATTCACAAATGCCATCGCTGTTCTTCACGAAGAGAGGTTTCTCAGCAAAAttggctGGGGAGCAGAGCAAGGCGTTGGAGGATTTGGAGATGATCCCGGGATTAAAGCACAACTTCTAAACCTTATTCGCTCTGTCAGGACAGTCATGAGAGTTCCTCTGATAGCAGTAAATTCAGTCTGTATCGTCTTACTTTTGTTGTTTGGATGAAGAAAGAATGGACTGCGGTGGATGAAGATCTAATGTGGAACACTGATTGTGGCAACGGAaaatgaccattttttttttttgtatctgtgGTTCTAAATGTTGCTCTCCAATGTCTCAAAATTGTATCCGAATGAATTACTGTAAGTACTCTGGTAGTTTTATATGACTAAAATACCAGTAAACGTTTTCCTTTTCACGCTTTCGTACCTCTATAAAAGCTCCCGTGTGTTTACgtggggttttttttttatttacatccaGGGTCTAGTAAAGTGTCAGTTGCTCAGGCATAACTTTTTTGTTCCAGTAAACAACAGAGAAATCAATCAGCTTTCCTTCACCAAAAGCCATACTGTTGTCTTCATTTttcacttctttttttgttttttgttttgtttaaccttttttaaatgtcaaatttccCAAGTGAATTTCCTATCATTTCAGTTTCAAAGACCACTTGGAAAGTTAAATCTGggtttaatatatttaaaggcATATGGGTAAAATCTTTGCATTTTAATAAAGATGTGCTAAAGGTATGTTGTTAATGGAACGTTTCAttgtttctgctttttttttttttttttttttagaaa

Function

symbol description
ier3ip1 Predicted to be involved in several processes, including endoplasmic reticulum to Golgi vesicle-mediated transport; organ growth; and positive regulation of secretion by cell. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in COPII-coated ER to Golgi transport vesicle and endoplasmic reticulum membrane. Predicted to be integral component of Golgi membrane. Orthologous to human IER3IP1 (immediate early response 3 interacting protein 1).

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0030134 COPII-coated ER to Golgi transport vesicle cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0030173 integral component of Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-050506-106 Predicted to be involved in several processes, including endoplasmic reticulum to Golgi vesicle-mediated transport; organ growth; and positive regulation of secretion by cell. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in COPII-coated ER to Golgi transport vesicle and endoplasmic reticulum membrane. Predicted to be integral component of Golgi membrane. Orthologous to human IER3IP1 (immediate early response 3 interacting protein 1).

Ensembl:

ensembl_id ENSDARG00000039601

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004926 True 913 mRNA 0.37 3 14542726 14545658

Neighbor

gene id symbol gene type direction distance location
XLOC_002650 hdhd2 coding downstream 2283 14525184 ~ 14540443 (-)
XLOC_002649 galt coding downstream 54208 14263684 ~ 14488518 (-)
XLOC_002648 BX000705.1 coding downstream 611030 13931569 ~ 13931696 (-)
XLOC_002645 cntfr coding downstream 769865 13460130 ~ 13772861 (-)
XLOC_002652 skor2 coding upstream 2283 14547941 ~ 14556978 (-)
XLOC_002653 CT027820.1 coding upstream 186625 14732283 ~ 14732399 (-)
XLOC_002654 smad2 coding upstream 325478 14871136 ~ 14943281 (-)
XLOC_002655 si:dkey-88l16.2 coding upstream 390387 14936045 ~ 14940346 (-)
XLOC_002656 NA coding upstream 485348 15031006 ~ 15042748 (-)
XLOC_002647 BX293994.1 non-coding downstream 930478 13612133 ~ 13612248 (-)
XLOC_002646 BX293994.2 non-coding downstream 935583 13607027 ~ 13607143 (-)
XLOC_002643 CR759894.1 non-coding downstream 1237543 13305065 ~ 13305183 (-)
XLOC_002642 NA non-coding downstream 1240753 13298839 ~ 13301973 (-)
XLOC_002657 NA non-coding upstream 487314 15032972 ~ 15034960 (-)
XLOC_002660 CT027832.1 non-coding upstream 536752 15082410 ~ 15086297 (-)
XLOC_002666 NA non-coding upstream 1171081 15716739 ~ 15724104 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G421497 NA non-coding CI01000304 null 4003039 ~ 4003732 (-)