XLOC_026511


Basic Information

Item Value
gene id XLOC_026511
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33918566 ~ 33919195 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053065
GCCCAAAAACGTGATTGGAAGGAAAACGCCCAAATATATTTCTTATTGGCTAACGCAGATTGTTCCCGCTCAAATTCGTTATTTCGGCGTTCAACGTTTTTTAAGAAACGTGGTATGTATGGGCACACACCGATTTATTTTAACTGACATTATAGACATGAAGGTTTTTAAAGAAAACCTTGTTTGTTGGAACAAAACTCCAGAAATGGCACGTAAAAAGTTTTTAGTTACACGAGTTTGTTTCATGAAATGACGCTGGGTCGCGGCGTTAACTGCAGGTAAAAACACTTCTGTTACTTACGTCGTCCCAGTGGTCAAATTCGTACCGCTTTTTCCTAAGTCCTGCCTCTACTTCTTTAAACAGGGCGTTCTCCTCTTCCTCGCTGATGAAGTTCTGTCTGACTTCAACCTGTCCACGCATTGCCGACAAAATTTCTTCGGACGATCCACACAACCATTTACACTCATCTGTACACTCGGGGCCTTTTCGTAAAGCTGAACTCTCCGAGAAAATCCTGTAAAGTGAGGTATTTTGCAGAGATTTCCTCTGAATTTGTCTGGATACTCTAATTAGTAGTGTCATGTTGTCGAGACCATATGTTGAGGGAATAAAATAGGCTATACGCGCAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053065 True 630 lncRNA 0.41 1 33918566 33919195

Neighbor

gene id symbol gene type direction distance location
XLOC_026510 cacna1aa coding downstream 17083 33773156 ~ 33901483 (-)
XLOC_026509 CU695077.1 coding downstream 227812 33681518 ~ 33690754 (-)
XLOC_026508 ELFN2 coding downstream 343990 33570583 ~ 33574576 (-)
XLOC_026507 sgsm3 coding downstream 424403 33461075 ~ 33494163 (-)
XLOC_026506 si:dkey-283b1.7 coding downstream 480770 33432191 ~ 33437796 (-)
XLOC_026512 gtf2f1 coding upstream 2776 33921971 ~ 33941875 (-)
XLOC_026513 BX510335.1 coding upstream 29474 33948669 ~ 33948788 (-)
XLOC_026514 ighd coding upstream 30051 33949246 ~ 33961589 (-)
XLOC_026515 ighv1-4 coding upstream 44052 33963247 ~ 34095221 (-)
XLOC_026516 ighj2-5 coding upstream 50943 33970138 ~ 33970190 (-)
XLOC_026505 CR396582.3 non-coding downstream 494238 33424192 ~ 33424328 (-)
XLOC_026500 CABZ01012959.1 non-coding downstream 573319 33344076 ~ 33345247 (-)
XLOC_026499 NA non-coding downstream 614443 33300194 ~ 33304123 (-)
XLOC_026483 NA non-coding downstream 1315375 32598644 ~ 32603191 (-)
XLOC_026529 BX649502.7 non-coding upstream 103970 34023165 ~ 34023613 (-)
XLOC_026534 BX649502.8 non-coding upstream 115997 34035192 ~ 34035631 (-)
XLOC_026538 BX649502.6 non-coding upstream 127984 34047179 ~ 34047616 (-)
XLOC_026539 BX649502.4 non-coding upstream 129010 34048205 ~ 34048653 (-)

Expression


Co-expression Network