XLOC_026512 (gtf2f1)


Basic Information

Item Value
gene id XLOC_026512
gene name gtf2f1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33921971 ~ 33941875 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051671
tgtgttTCCTTTTAATTAGTACACAAGAAAGCGTATATCAGCGAGTTTAAGCATTGTGAAATGAAGTAGAAACGCGGATTTCGCCTAACACAGATCAACCTTGCCATAACACAGCTAACGTTAAATATTTACGGTCATTAACAGTACTTCTTACTCTGCAGTAATGACGTCACTGGGTTCACAGGGGAGCAGCAGTTCATCCTCAACGGAGTATGTAGTACGAGTTCcaaaAAACACCAATAAGAAATACAGTATAATGGCTTTCAATGCTGGTGATAAAGTCAGTTGTTCCACATGGACTCAGGCTCGTATGGAGCGGGACATGAGTAATAGACGTATATATGGTGAGGAGGAGACACAAGAGGGGGCAGCAGGGAGTGAGTTTGGAAAAAAACAGAGAGAAGAAGCAAGGAGGAAGAAGTATGGCATCATTACGAAAGAGTTCAAGGTAGAGGACCAGCCTTGGATCCTTAAAGTTAACGGCAAGGCAGGAAGAAGATTTAAGGGTATAAAAAAAGGGGGCGTTACAGAGAATGCGTCCTACTACATCTTCACACAGAGTGCCGATGGTGCTTTTGAGGCATTTCCCGTGCACGCCTGGTATAACTTCACACCACAGGCCAAACACCGCACGCTCACAGCTGAGGAAGCAGAGGAAGAGTGGGGCAGgAGAAACAAAGTGGTGAACCACTTCAGTATCATGCTCCAGCGGCGTTTAAGAGAACAGGAGCGAGGAGGAGGAGATGAGGATGAGGAGGAAGGAGAAAAAGGcacaaagaaaaagaagaagggaGGCAGAGGAGGTGACCTGCGAATTCATGACCTCGAGGAAGATTTGGAAATGAGCAGCGATGAAAGTGATGGCAGCAATGGAGATGATGATGAAGCCAAGGCGAAAGCTAAAAAGGAAAAAGGTGCCAAAGGCAagggaaagaagaagaagaaaaagggcAGCGACTTAGAAGGATTTGAGGACAGTGACGATGGTGACTTTGAGGGTTTGGAGGTGGACTACATGTCTGATGAGAGCAGTTCAGAAGAAGAAGAACCAGAGAAGACCAAGCCCAATAAGGGAGAGGATGTTCCTAAAGGGATTGATGAAATGTCTGAAAGTGAGGAAGAGAGTGAGGAAGAGACCAAGAATGAGGAAGAGAAtaaggaagaggaagaggaggaagatgGGAAGAAGACGCCAGTGCAGgtggaaaagaagaaaaagaaagACAGCAGCGGCGAGTCCGACAGCTCTGAGGACAGTGATATTGAAGGAGAGGCAGCGTCAGCACTGTTTATGAAGAAGCGCACACCTCCTAAGCGAGGAGGTGGCCGTGGCTCAGCAGGCAGTTCAAGAACAGGTAGTCGACCAGGCACACCATCTATTGATAATGCTGCCACTTCCAACACTCTCCGTGCTGCTGCCAGCAAACTGGAGCAAGGTAAGCGACAGACAACTGTGCCGAGCTCAGAAACTCCAGCAGCCAAGAGATTAAAGATGGAGCCCAGTCCTCAAAGCTCCTCAGGGAAAAGCACACCACAGCCAGCGTCAGGGAAATCCACCCCCAGCGCCAGTGATGTGCTGCTGACAGAGGATGCGGTGCGCAGGTATCTCATCAGAAAGCCCATGACCACTAAAGACCTGCTGAAGAAGTTCCAGACTAAACGCACAGGCCTCAGCAGCGAGCAGACAGTCAATGTGCTCGCGCAGATCTTAAAGAGGCTCAATCCAGAGAGGAAGAACATCAATGACAAGATGCACTTCTACCTCACTGAGTGAAACTCTAAGCATCCATCACCAGCAGCCTCGCCTTCAGGAATGCAGCTCATTTTGGTGAACACCTACTTTGTTTTGCTGTCATTTTGCTTTTAACAGTCCAGTGTTTATTTACAGTAGTCATTAAACTGCTGCTCATTGAGTTAAAGCTGAGAATACCGGAGGTCAAGAGTAAAATGACAAAGAAACGTTGCAAAGAAAGATAGCACAGTGAgtttttgtatattgtagatatAGGAAATGTGTGATTGTAAATTTCACATTTATGCATCTTAATGAGAAGCTGGTTAATGTTTTTCcaagaaagaaattaaataagGACTCAGAAAATGTGAAGATGTGGCTTTTATTACACACTCATTTGttctaatagattttttttttaactggctTAACATtgtgctgatttaaaaaaaaaaactgtaaaaggtACCATATTTTGCTGGCGCTTGCCCTTTGTAGTATGATATATCTGTTTTGAAATAAATACCTATtggtttttatttgaaa
>TCONS_00051672
tgtgttTCCTTTTAATTAGTACACAAGAAAGCGTATATCAGCGAGTTTAAGCATTGTGAAATGAAGTAGAAACGCGGATTTCGCCTAACACAGATCAACCTTGCCATAACACAGCTAACGTTAAATATTTACGGTCATTAACAGTACTTCTTACTCTGCAGTAATGACGTCACTGGGTTCACAGGGGAGCAGCAGTTCATCCTCAACGGAGTATGTAGTACGAGTTCcaaaAAACACCAATAAGAAATACAGTATAATGGCTTTCAATGCTGGTGATAAAGTCAGTTGTTCCACATGGACTCAGGCTCGTATGGAGCGGGACATGAGTAATAGACGTATATATGGTGAGGAGGAGACACAAGAGGGGGCAGCAGGGAGTGAGTTTGGAAAAAAACAGAGAGAAGAAGCAAGGAGGAAGAAGTATGGCATCATTACGAAAGAGTTCAAGGTAGAGGACCAGCCTTGGATCCTTAAAGTTAACGGCAAGGCAGGAAGAAGATTTAAGGGTATAAAAAAAGGGGGCGTTACAGAGAATGCGTCCTACTACATCTTCACACAGAGTGCCGATGGTGCTTTTGAGGCATTTCCCGTGCACGCCTGGTATAACTTCACACCACAGGCCAAACACCGCACGCTCACAGCTGAGGAAGCAGAGGAAGAGTGGGGCAGgAGAAACAAAGTGGTGAACCACTTCAGTATCATGCTCCAGCGGCGTTTAAGAGAACAGGAGCGAGGAGGAGGAGATGAGGATGAGGAGGAAGGAGAAAAAGGcacaaagaaaaagaagaagggaGGCAGAGGAGGTGACCTGCGAATTCATGACCTCGAGGAAGATTTGGAAATGAGCAGCGATGAAAGTGATGGCAGCAATGGAGATGATGATGAAGCCAAGGCGAAAGCTAAAAAGGAAAAAGGTGCCAAAGGCAagggaaagaagaagaagaaaaagggcAGCGACTTAGAAGGATTTGAGGACAGTGATATTGAAGGAGAGGCAGCGTCAGCACTGTTTATGAAGAAGCGCACACCTCCTAAGCGAGGAGGTGGCCGTGGCTCAGCAGGCAGTTCAAGAACAGGTAGTCGACCAGGCACACCATCTATTGATAATGCTGCCACTTCCAACACTCTCCGTGCTGCTGCCAGCAAACTGGAGCAAGGTAAGCGACAGACAACTGTGCCGAGCTCAGAAACTCCAGCAGCCAAGAGATTAAAGATGGAGCCCAGTCCTCAAAGCTCCTCAGGGAAAAGCACACCACAGCCAGCGTCAGGGAAATCCACCCCCAGCGCCAGTGATGTGCTGCTGACAGAGGATGCGGTGCGCAGGTATCTCATCAGAAAGCCCATGACCACTAAAGACCTGCTGAAGAAGTTCCAGACTAAACGCACAGGCCTCAGCAGCGAGCAGACAGTCAATGTGCTCGCGCAGATCTTAAAGAGGCTCAATCCAGAGAGGAAGAACATCAATGACAAGATGCACTTCTACCTCACTGAGTGAAACTCTAAGCATCCATCACCAGCAGCCTCGCCTTCAGGAATGCAGCTCATTTTGGTGAACACCTACTTTGTTTTGCTGTCATTTTGCTTTTAACAGTCCAGTGTTTATTTACAGTAGTCATTAAACTGCTGCTCATTGAGTTAAAGCTGAGAATACCGGAGGTCAAGAGTAAAATGACAAAGAAACGTTGCAAAGAAAGATAGCACAGTGAgtttttgtatattgtagatatAGGAAATGTGTGATTGTAAATTTCACATTTATGCATCTTAATGAGAAGCTGGTTAATGTTTTTCcaagaaagaaattaaataagGACTCAGAAAATGTGAAGATGTGGCTTTTATTACACACTCATTTGttctaatagattttttttttaactggctTAACATtgtgctgattt
>TCONS_00051673
TGAAACTTTGGCtgtgttTCCTTTTAATTAGTACACAAGAAAGCGTATATCAGCGAGTTTAAGCATTGTGAAATGAAGTAGAAACGCGGATTTCGCCTAACACAGATCAACCTTGCCATAACACAGCTAACGTTAAATATTTACGGTCATTAACAGTACTTCTTACTCTGCAGTAATGACGTCACTGGGTTCACAGGGGAGCAGCAGTTCATCCTCAACGGAGTATGTAGTACGAGTTCcaaaAAACACCAATAAGAAATACAGTATAATGGCTTTCAATGCTGGTGATAAAGTCAGTTGTTCCACATGGACTCAGGCTCGTATGGAGCGGGACATGAGTAATAGACGTATATATGGTGAGGAGGAGACACAAGAGGGGGCAGCAGGGAGTGAGTTTGGAAAAAAACAGAGAGAAGAAGCAAGGAGGAAGAAGTATGGCATCATTACGAAAGAGTTCAAGGTAGAGGACCAGCCTTGGATCCTTAAAGTTAACGGCAAGGCAGGAAGAAGATTTAAGGGTATAAAAAAAGGGGGCGTTACAGAGAATGCGTCCTACTACATCTTCACACAGAGTGCCGATGGTGCTTTTGAGGCATTTCCCGTGCACGCCTGGTATAACTTCACACCACAGGCCAAACACCGCACGCTCACAGCTGAGGAAGCAGAGGAAGAGTGGGGCAGgAGAAACAAAGTGGTGAACCACTTCAGTATCATGCTCCAGCGGCGTTTAAGAGAACAGGAGCGAGGAGGAGGAGATGAGGATGAGGAGGAAGGAGAAAAAGGcacaaagaaaaagaagaagggaGGCAGAGGAGGTGACCTGCGAATTCATGACCTCGAGGAAGATTTGGAAATGAGCAGCGATGAAAGTGATGGCAGCAATGGAGATGATGATGAAGCCAAGGCGAAAGCTAAAAAGGAAAAAGGTGCCAAAGGCAagggaaagaagaagaagaaaaagggcAGCGACTTAGAAGGATTTGAGGACAGTGATATTGAAGGAGAGGCAGCGTCAGCACTGTTTATGAAGAAGCGCACACCTCCTAAGCGAGGAGGTGGCCGTGGCTCAGCAGGCAGTTCAAGAACAGGTAGTCGACCAGGCACACCATCTATTGATAATGCTGCCACTTCCAACACTCTCCGTGCTGCTGCCAGCAAACTGGAGCAAGGTAAGCGACAGACAACTGTGCCGAGCTCAGAAACTCCAGCAGCCAAGAGATTAAAGATGGAGCCCAGTCCTCAAAGCTCCTCAGGGAAAAGCACACCACAGCCAGCGTCAGGGAAATCCACCCCCAGCGCCAGTGATGTGCTGCTGACAGAGGATGCGGTGCGCAGGTATCTCATCAGAAAGCCCATGACCACTAAAGACCTGCTGAAGAAGTTCCAGACTAAACGCACAGGCCTCAGCAGCGAGCAGACAGTCAATGTGCTCGCGCAGATCTTAAAGAGGCTCAATCCAGAGAGGAAGAACATCAATGACAAGATGCACTTCTACCTCACTGAGTGAAACTCTAAGCATCCATCACCAGCAGCCTCGCCTTCAGGAATGCAGCTCATTTTGGTGAACACCTACTTTGTTTTGCTGTCATTTTGCTTTTAACAGTCCAGTGTTTATTTACAGTAGTCATTAAACTGCTGCTCATTGAGTTAAAGCTGAGAATACCGGAGGTCAAGAGTAAAATGACAAAGAAACGTTGCAAAGAAAGATAGCACAGTGAgtttttgtatattgtagatatAGGAAATGTGTGATTGTAAATTTCACATTTATGCATCTTAATGAGAAGCTGGTTAATGTTTTTCcaagaaagaaattaaataagGACTCAGAAAATGTGAAGATGTGGCTTTTATTACACACTCATTTGttctaatagattttttttttaactggctTAACATtgtgctgattt
>TCONS_00051674
GATTTGGAAATGAGCAGCGATGAAAGTGATGGCAGCAATGGAGATGATGATGAAGCCAAGGCGAAAGCTAAAAAGGAAAAAGGTGCCAAAGGCAagggaaagaagaagaagaaaaagggcAGCGACTTAGAAGGATTTGAGGACAGTGACGATGGTGACTTTGAGGGTTTGGAGGTGGACTACATGTCTGATGAGAGCAGTTCAGAAGAAGAAGAACCAGAGAAGACCAAGCCCAATAAGGGAGAGGATGTTCCTAAAGGGATTGATGAAATGTCTGAAAGTGAGGAAGAGAGTGAGGAAGAGACCAAGAATGAGGAAGAGAAtaaggaagaggaagaggaggaagatgGGAAGAAGACGCCAGTGCAGgtggaaaagaagaaaaagaaagACAGCAGCGGCGAGTCCGACAGCTCTGAGGACAGTGATATTGAAGGAGAGGCAGCGTCAGCACTGTTTATGGTGAAGAAGCGCACACCTCCTAAGCGAGGAGGTGGCCGTGGCTCAGCAGGCAGTTCAAGAACAGGTAGTCGACCAGGCACACCATCTATTGATAATGCTGCCACTTCCAACACTCTCCGTGCTGCTGCCAGCAAACTGGAGCAAGGTAAGCGACAGACAACTGTGCCGAGCTCAGAAACTCCAGCAGCCAAGAGATTAAAGATGGAGCCCAGTCCTCAAAGCTCCTCAGGGAAAAGCACACCACAGCCAGCGTCAGGGAAATCCACCCCCAGCGCCAGTGATGTGCTGCTGACAGAGGATGCGGTGCGCAGGTATCTCATCAGAAAGCCCATGACCACTAAAGACCTGCTGAAGAAGTTCCAGACTAAACGCACAGGCCTCAGCAGCGAGCAGACAGTCAATGTGCTCGCGCAGATCTTAAAGAGGCTCAATCCAGAGAGGAAGAACATCAATGACAAGATGCACTTCTACCTCACTGAGTGAAACTCTAAGCATCCATCACCAGCAGCCTCGCCTTCAGGAATGCAGCTCATTTTGGTGAACACCTACTTTGTTTTGCTGTCATTTTGCTTTT
>TCONS_00051675
ATTGAAAATTGTAATTCTTATAAATATTAGTCTTGCCATTAAAAAGCCATCCACTTTTAAGGTGGCAATAAACTAAATCTGAATAAAATGTGCTCATGACTAATTAAAACCATCGCAACCAGTCGTGCTGACACAATGAGCTGATTTCGGATTTGTTGTTGgtgtttaattgcatttaaagtgtgttattatttgtttagATCTTGTTTTActgctgttttctttctctttgcCACTCAGATTTAAGGGTATAAAAAAAGGGGGCGTTACAGAGAATGCGTCCTACTACATCTTCACACAGAGTGCCGATGGTGCTTTTGAGGCATTTCCCGTGCACGCCTGGTATAACTTCACACCACAGGCCAAACACCGCACGCTCACAGCTGAGGAAGCAGAGGAAGAGTGGGGCAGgAGAAACAAAGTGGTGAACCACTTCAGTATCATGCTCCAGCGGCGTTTAAGAGAACAGGAGCGAGGAGGAGGAGATGAGGATGAGGAGGAAGGAGAAAAAGGcacaaagaaaaagaagaagggaGGCAGAGGAGGTGACCTGCGAATTCATGACCTCGAGGAAGATTTGGAAATGAGCAGCGATGAAAGTGATGGCAGCAATGGAGATGATGATGAAGCCAAGGCGAAAGCTAAAAAGGAAAAAGTCCTCAAAGCTCCTCAGGGAAAAGCACACCACAGCCAGCGTCAGGGAAATCCACCCCCAGCGCCAGTGATGTGCTGCTGACAGAGGATGCGGTGCGCAGGTATCTCATCAGAAAGCCCATGACCACTAA
>TCONS_00051676
AGATTTAAGGGTATAAAAAAAGGGGGCGTTACAGAGAATGCGTCCTACTACATCTTCACACAGAGTGCCGATGGTGCTTTTGAGGCATTTCCCGTGCACGCCTGGTATAACTTCACACCACAGGCCAAACACCGCACGCTCACAGCTGAGGAAGCAGAGGAAGAGTGGGGCAGgAGAAACAAAGTGGTGAACCACTTCAGTATCATGCTCCAGCGGCGTTTAAGAGAACAGGAGCGAGGAGGAGGAGATGAGGATGAGGAGGAAGGAGAAAAAGGcacaaagaaaaagaagaagggaGGCAGAGGAGGTGACCTGCGAATTCATGACCTCGAGGAAGATTTGGAAATGAGCAGCGATGAAAGTGATGGCAGCAATGGAGATGATGATGAAGCCAAGGCGAAAGCTAAAAAGGAAAAAGGTGCCAAAGGCAagggaaagaagaagaagaaaaagggcAGCGACTTAGAAGGATTTGAGGACAGTGACGATGGTGACTTTGAGGGTTTGGAGGTGGACTACATGTCTGATGAGAGCAGTTCAGAAGAAGAAGAACCAGAGAAGACCAAGCCCAATAAGGGAGAGGATGTTCCT
>TCONS_00051677
GTCATTAACAGTACTTCTTACTCTGCAGTAATGACGTCACTGGGTTCACAGGGGAGCAGCAGTTCATCCTCAACGGAGTATGTAGTACGAGTTCcaaaAAACACCAATAAGAAATACAGTATAATGGCTTTCAATGCTGGTGATAAAGTCAGTTGTTCCACATGGACTCAGGCTCGTATGGAGCGGGACATGAGTAATAGACGTATATATGGTGAGGAGGAGACACAAGAGGGGGCAGCAGGGAGTGAGTTTGGAAAAAAACAGAGAGAAGAAGCAAGGAGGAAGAAGTATGGCATCATTACGAAAGAGTTCAAGGTAGAGGACCAGCCTTGGATCCTTAAAGTTAACGGCAAGGCAGGAAGAAGGTACACTTTATGCTTTTATCTTTTGCATTTAAGTGTTTATTGTTGCAATGATTGTTGTTGTGTCACCATGCATGGGGCTTATGATTTGGGcagaataaaaatacttttgaatTAAAATCAAACATgacacaaaaatgtcaaaatttgtAGTAATCAAAAGTGGATTAAGTGGTTATTCAGAAAGTTATTCATGAAAGTTATTCAGATTGCATTTATGGAATAGTTTCTGTGAACcattcttttttatgtaaagtcTGCA

Function

symbol description
gtf2f1 Predicted to enable RNA polymerase II general transcription initiation factor activity and TFIIF-class transcription factor complex binding activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within positive regulation of transcription elongation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIF complex. Orthologous to human GTF2F1 (general transcription factor IIF subunit 1).

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005674 transcription factor TFIIF complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0016251 RNA polymerase II general transcription initiation factor activity molecular_function
GO:0001096 TFIIF-class transcription factor complex binding molecular_function

KEGG:

id description
ko03022 Basal transcription factors
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-030131-4557 Predicted to enable RNA polymerase II general transcription initiation factor activity and TFIIF-class transcription factor complex binding activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within positive regulation of transcription elongation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIF complex. Orthologous to human GTF2F1 (general transcription factor IIF subunit 1).

Ensembl:

ensembl_id ENSDARG00000032129

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051671 False 2281 mRNA 0.45 14 33921971 33941319
TCONS_00051672 False 1901 mRNA 0.45 12 33922072 33941319
TCONS_00051673 False 1913 mRNA 0.45 13 33922072 33941875
TCONS_00051674 False 1036 mRNA 0.50 8 33922387 33934788
TCONS_00051675 False 785 lncRNA 0.45 5 33922620 33935438
TCONS_00051676 False 591 mRNA 0.49 4 33932379 33935200
TCONS_00051677 True 624 lncRNA 0.38 4 33936453 33938821

Neighbor

gene id symbol gene type direction distance location
XLOC_026511 NA coding downstream 2776 33918566 ~ 33919195 (-)
XLOC_026510 cacna1aa coding downstream 20488 33773156 ~ 33901483 (-)
XLOC_026509 CU695077.1 coding downstream 231217 33681518 ~ 33690754 (-)
XLOC_026508 ELFN2 coding downstream 347395 33570583 ~ 33574576 (-)
XLOC_026507 sgsm3 coding downstream 427808 33461075 ~ 33494163 (-)
XLOC_026513 BX510335.1 coding upstream 6794 33948669 ~ 33948788 (-)
XLOC_026514 ighd coding upstream 7371 33949246 ~ 33961589 (-)
XLOC_026515 ighv1-4 coding upstream 21372 33963247 ~ 34095221 (-)
XLOC_026516 ighj2-5 coding upstream 28263 33970138 ~ 33970190 (-)
XLOC_026517 ighj2-3 coding upstream 28806 33970681 ~ 33970734 (-)
XLOC_026505 CR396582.3 non-coding downstream 497643 33424192 ~ 33424328 (-)
XLOC_026500 CABZ01012959.1 non-coding downstream 576724 33344076 ~ 33345247 (-)
XLOC_026499 NA non-coding downstream 617848 33300194 ~ 33304123 (-)
XLOC_026529 BX649502.7 non-coding upstream 81290 34023165 ~ 34023613 (-)
XLOC_026534 BX649502.8 non-coding upstream 93317 34035192 ~ 34035631 (-)
XLOC_026538 BX649502.6 non-coding upstream 105304 34047179 ~ 34047616 (-)
XLOC_026539 BX649502.4 non-coding upstream 106330 34048205 ~ 34048653 (-)

Expression


Co-expression Network