Fish Transcriptome and Expression Database

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model fish

XLOC_026513 (BX510335.1)

Basic Information

Item	Value
gene id	XLOC_026513
gene name	BX510335.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007114.7
NCBI id	CM002887.2
chromosome length	62628489
location	33948669 ~ 33948788 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051678
GCTGGCAGCTAGGTCTCTGCAACTCTAACATGGTCACCaattgaagctaagcagagctgtgcctggtcagtagccggatgggagaccacatggaaaaactactgtaggttgctgctggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000084425

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00051678	True	120	rRNA	0.52	1	33948669	33948788

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_026512	gtf2f1	coding	downstream	6794	33921971 ~ 33941875 (-)
XLOC_026511	NA	coding	downstream	29474	33918566 ~ 33919195 (-)
XLOC_026510	cacna1aa	coding	downstream	47186	33773156 ~ 33901483 (-)
XLOC_026509	CU695077.1	coding	downstream	257915	33681518 ~ 33690754 (-)
XLOC_026508	ELFN2	coding	downstream	374093	33570583 ~ 33574576 (-)
XLOC_026514	ighd	coding	upstream	458	33949246 ~ 33961589 (-)
XLOC_026515	ighv1-4	coding	upstream	14459	33963247 ~ 34095221 (-)
XLOC_026516	ighj2-5	coding	upstream	21350	33970138 ~ 33970190 (-)
XLOC_026517	ighj2-3	coding	upstream	21893	33970681 ~ 33970734 (-)
XLOC_026518	ighj2-2	coding	upstream	22160	33970948 ~ 33970998 (-)
XLOC_026505	CR396582.3	non-coding	downstream	524341	33424192 ~ 33424328 (-)
XLOC_026500	CABZ01012959.1	non-coding	downstream	603422	33344076 ~ 33345247 (-)
XLOC_026499	NA	non-coding	downstream	644546	33300194 ~ 33304123 (-)
XLOC_026529	BX649502.7	non-coding	upstream	74377	34023165 ~ 34023613 (-)
XLOC_026534	BX649502.8	non-coding	upstream	86404	34035192 ~ 34035631 (-)
XLOC_026538	BX649502.6	non-coding	upstream	98391	34047179 ~ 34047616 (-)
XLOC_026539	BX649502.4	non-coding	upstream	99417	34048205 ~ 34048653 (-)
XLOC_026544	BX649502.10	non-coding	upstream	109891	34058679 ~ 34058717 (-)

Expression

Co-expression Network