G758512


Basic Information

Item Value
gene id G758512
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87623329 ~ 87633544 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU861751
gacctatagcatatcacatcaataggacctgacctatatcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatggcatatcacatcaataggacctgacctatagcatatcctaatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatatcctaatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatatcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatggcatatcacatcaataggacctgacctatagcatatcctaatcaAATCAATAgaacctgacctatagcatatcacatcaataggacctgacctatatcatatcctaatcacatcaataggacctgacctatatcatatcctaatcacatcaataggatctgacctatagcatatcacatcaataggacctgacctatatcatatcctaatcacatcaataggatctgacctatatcatatcctaatcacatcaataggacctgacctatagcatatcctaatcacatcaataggatctgacctatagcatatcctaatcacatcaataggacctgacctatagcatatcctaatcacatcagtaggacctgacctatagcatatcatatCACATctataggacctgacctatagcatatcacatcaataggacctgacctatatcatagcacatcaataggacctgacctatatcctgatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatgtcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatgtcatatcacatcaataggacctgacctatagcatatcacatcaataggatctgacctatatcatatcctaatcacatcaataggacctgacctatagcatatcctaatcacatcagtaggacctgacctatagcatatcatatCACATctataggacctgacctatagcatatcacatcaataggacctgacctatatcatagcacatcaataggacctgacctatatcctgatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatgtcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacccatggcatatcacatcaataggacctgacctatagcgtATCCTAATCaaatcaataggacctgacctatagcatatcacatcaataggacctgacctatatcatatcctaatcacatcaataggacctgacctatatcatatcctaatcacatcagtaggacctgacctatagcatatcctaatcacatcaataggacctgacctatatcatatcctaatcacatcaataggatctgacctatagcatatcctaatcacatcaataggacctgacctatatcatatcctaatcacatcaataggatctgacctatagcatatcctaatcacatcaataggacctgacctatagcatatcctaatcacatcaataggacctgacctatagcatatcctaatcacatcaataggacctgacctatagcatatcctaatcacatcaataggacctgacctagagcatatcctaatcacatcaataggacctgacctatagcatatcacatcaataagACCTGACctatatcctaatcacatcaataggacctgacctatatcatagcacatcaataggacctgacctatatcctaatcacatcaattggacctgacctatagcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatagcatatcctaatcacatcaataggacctgacatatagcatatcctaatcacatcaataggtcctgacctatatcatatcttaatcacatcaataggatctgacctatagcatatcctaatcacatcaataggacctgatctatagcatatcacatcaataggacctgacctatatcatagcacatcaataggacctgacctatatcctaatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatatcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatagcatatccttatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatagcatatcctaatcacatcagtaggacctgacctatagcatatcctaatcacatcaataagaCCTGACctatatcctaatcacatcaataggacctgacctatatcatagcacatcaataggacctgacctatatccttatcacatcaataggacctgacctatagcatatcacataaataggacctgacctatagcatatcacatcaataggacctgagctatagcatatcacatcaataggacctgacctatggcatatcacatcaataggatctgacctatagcatatcctaatcaaatcaataggacctgacctatagcatatcacatcaataggatctgacctatagcatatcctaatcacatcaataggatctgacctatagcatatcacatcaataggacctgacctatagcatatcacatcaacaggacctgacctatagcatatcacatcaataggacctgacctatatcatatcttaatcacatcaataggaatctga

Function

NR:

description
proline-rich extensin-like protein EPR1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU861751 True 2979 lncRNA 0.39 2 87623329 87633544

Neighbor

gene id symbol gene type direction distance location
LOC110519501 LOC106569361 coding upstream 73491 87532950 ~ 87549838 (+)
LOC110530822 LOC106596771 coding upstream 216884 87003179 ~ 87406445 (+)
ly97.3 LOC106596797 coding upstream 702816 86912176 ~ 86920513 (+)
LOC110530851 LOC106569794 coding upstream 995427 86591510 ~ 86629379 (+)
LOC110504868 LOC106569793 coding upstream 1039591 86569700 ~ 86583738 (+)
LOC110512127 LOC106591122 coding downstream 54387 87687931 ~ 87691743 (+)
LOC110513441 apcdd1 coding downstream 112248 87745792 ~ 87775447 (+)
acss2l LOC106596660 coding downstream 383676 88017220 ~ 88059703 (+)
LOC110510807 LOC106569716 coding downstream 991897 88625441 ~ 88642762 (+)
LOC110510805 LOC105030507 coding downstream 1012856 88646400 ~ 88667320 (+)
G758486 NA non-coding upstream 75398 87547511 ~ 87547931 (+)
G758482 NA non-coding upstream 81790 87541227 ~ 87541539 (+)
G758432 NA non-coding upstream 187691 87407527 ~ 87435638 (+)
G758433 NA non-coding upstream 206435 87415728 ~ 87416894 (+)
G758410 NA non-coding upstream 272575 87350026 ~ 87350754 (+)
G758513 NA non-coding downstream 200 87633744 ~ 87634980 (+)
G758520 NA non-coding downstream 5992 87639536 ~ 87640417 (+)
G758495 NA non-coding downstream 45805 87679349 ~ 87684205 (+)
G758860 NA non-coding downstream 91125 87724669 ~ 87725814 (+)
G758259 LOC106569763 other upstream 689318 86933446 ~ 86934011 (+)
G758045 NA other upstream 987869 86634784 ~ 86635460 (+)
G757902 NA other upstream 1090950 86531153 ~ 86532379 (+)
G757754 NA other upstream 1391870 86230351 ~ 86231459 (+)
G758531 NA other downstream 83273 87716817 ~ 87717718 (+)
G758866 NA other downstream 98750 87732294 ~ 87733139 (+)
G758892 NA other downstream 241576 87875120 ~ 87876684 (+)
G758976 ankrd12 other downstream 332148 87959523 ~ 87971929 (+)
G758988 NA other downstream 358426 87991970 ~ 87995145 (+)

Expression


Co-expression Network