G758891 (ralbp1)


Basic Information

Item Value
gene id G758891
gene name ralbp1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87846933 ~ 87866192 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU862269
CTACACCTTTATTTTTCAACTGGCATGGGAAGCTACGAAAGCCTTTTAACAATATGAAAATAACCTTATGGCGAAGATGAAACCACAGTGACGTGTCATATCCATTTCAATCGTGACAGATCCGTTAATAAACGATAACATTTGTAAAATCACATTTCCCCCGGCAACAGGATTTTCTCAGACCAACAAGTTCCAACGCTGTAGAACAGAGCGCGGTCACACTTCCTTCAGTTAATTCAGATCATTACTTACGTcaacaaaaacaacagaaatgCCGAAAAAACAACATAAGAGTTGAAAATACAGTATGTTTTACATTTTACAATAATGTACATGCACATCCTGCTGTGCCGTCTTGATGTCCTTCGCTTTCACCCATCACAAATTGACACCGACAGGTAAAGTAGCGTGTTTCCATTGTTCCAATGGTCATAGACTATGTATTCTGTAATGACTGACTTATAATGTTGACTTGCGCCCACTTATAACAAGCTCTTGTTTATTAGGGCagagaatgaaaaaaaaaaaaacgttaaaaaaaaaatgttttgcaacggaaagagaaaaaaaatgtgCATTTCTCATTGAACAAGTTAAGTTAGTGCCACCCCGTGTTCAAtttgttttcttccgtttggtgcccaaatgaacacaacccagtccTTCTGACCCTCTGTCAATAAGAGATGTAATTATGAATATGGAAAAAGGAAGGCAACATTTTACTTGAAGGGTACTACCTACATAAggacttcataacacattcataacccatccaTAAAACattcataagcactacataagCATTTCGTAACGCTTATCTCTTTGGGTTCTGAAATGTGTTCTGTAGATCATTCAAAAGGTTTGTATTAACAGGCACAGCAGTGCTCAGTGAAGTTGACATGTCCGTGCTGCTTCTTCAGCTTACCATCATCTACTATATATCATATTACTGAATAAATGGCATCAGGTAGGTACATTTAAACGTTTTATATTAGCAAGGATTAGACTTCTTCTCCCAATATCTACCAGCGTATTATGTAAATATATAGAAAGACCAATCACCAATATCTACCAGCGTATTATGTAAATATATAGAAAGACCAATCACCAATATCTACCAGAGTATTATGTAAATATATAATAGATAGATAGACTaatcggcagggtagcctagtggtttagagcgttgggccagtaaccggaaggttgcaagatcgaatcctccgagctgacaaggtacaaacaaatctgtcgttctgcccctgaataaggcagttaacccaccgttccaaggccgtcattgaaaataagaat
>TU862270
CTACACCTTTATTTTTCAACTGGCATGGGAAGCTACGAAAGCCTTTTAACAATATGAAAATAACCTTATGGCGAAGATGAAACCACAGTGACGTGTCATATCCATTTCAATCGTGACAGATCCGTTAATAAACGATAACATTTGTAAAATCACATTTCCCCCGGCAACAGGATTTTCTCAGACCAACAAGTTCCAACGCTGTAGAACAGAGCGCGGTCACACTTCCTTCAGTTAATTCAGATCATTACTTACGTcaacaaaaacaacagaaatgCCGAAAAAACAACATAAGAGTTGAAAATACAGTATGTTTTACATTTTACAATAATGTACATGCACATCCTGCTGTGCCGTCTTGATGTCCTTCGCTTTCACCCATCACAAATTGACACCGACAGGTAAAGTAGCGTGTTTCCATTGTTCCAATGGTCATAGACTATGTATTCTGTAATGACTGACTTATAATGTTGACTTGCGCCCACTTATAACAAGCTCTTGTTTATTAGGGCagagaatgaaaaaaaaaaaaacgttaaaaaaaaaatgttttgcaacggaaagagaaaaaaaatgtgCATTTCTCATTGAACAAGTTAAGTTAGTGCCACCCCGTGTTCAAtttgttttcttccgtttggtgcccaaatgaacacaacccagtccTTCTGACCCTCTGTCAATAAGAGATGTAATTATGAATATGGAAAAAGGAAGGCAACATTTTACTTGAAGGGTACTACCTACATAAggacttcataacacattcataacccatccaTAAAACattcataagcactacataagCATTTCGTAACGCTTATCTCTTTGGGTTCTGAAATGTGTTCTGTAGATCATTCAAAAGGTTTGTATTAACAGGCACAGCAGTGCTCAGTGAAGTTGACATGTCCGTGCTGCTTCTTCAGCTTACCATCATCTACTATATATCATATTACTGAATAAATGGCATCAGGTAGGTACATTTAAACGTTTTATATTAGCAAGGATTAGACTTCTTCTCCCAATATCTACCAGCGTATTATGTAAATATATAGAAAGACCAATCACCAATATCTACCAGCGTATTATGTAAATATATAGAAAGACCAATCACCAATATCTACCAGAGTATTATGTAAATATATAATAGATAGATAGACTaatcggcagggtagcctagtggtttagagcgttgggccagtaaccggaaggttgcaagatcgaatcctccgagctgacaaggtacaaacaaatctgtcgttctgcccctgaacaagacagttaacc
>TU862271
CTACACCTTTATTTTTCAACTGGCATGGGAAGCTACGAAAGCCTTTTAACAATATGAAAATAACCTTATGGCGAAGATGAAACCACAGTGACGTGTCATATCCATTTCAATCGTGACAGATCCGTTAATAAACGATAACATTTGTAAAATCACATTTCCCCCGGCAACAGGATTTTCTCAGACCAACAAGTTCCAACGCTGTAGAACAGAGCGCGGTCACACTTCCTTCAGTTAATTCAGATCATTACTTACGTcaacaaaaacaacagaaatgCCGAAAAAACAACATAAGAGTTGAAAATACAGTATGTTTTACATTTTACAATAATGTACATGCACATCCTGCTGTGCCGTCTTGATGTCCTTCGCTTTCACCCATCACAAATTGACACCGACAGGTAAAGTAGCGTGTTTCCATTGTTCCAATGGTCATAGACTATGTATTCTGTAATGACTGACTTATAATGTTGACTTGCGCCCACTTATAACAAGCTCTTGTTTATTAGGGCagagaatgaaaaaaaaaaaaacgttaaaaaaaaaatgttttgcaacggaaagagaaaaaaaatgtgCATTTCTCATTGAACAAGTTAAGTTAGTGCCACCCCGTGTTCAAtttgttttcttccgtttggtgcccaaatgaacacaacccagtccTTCTGACCCTCTGTCAATAAGAGATGTAATTATGAATATGGAAAAAGGAAGGCAACATTTTACTTGAAGGGTACTACCTACATAAggacttcataacacattcataacccatccaTAAAACattcataagcactacataagCATTTCGTAACGCTTATCTCTTTGGGTTCTGAAATGTGTTCTGTAGATCATTCAAAAGGTTTGTATTAACAGGCACAGCAGTGCTCAGTGAAGTTGACATGTCCGTGCTGCTTCTTCAGCTTACCATCATCTACTATATATCATATTACTGAATAAATGGCATCAGGTAGGTACATTTAAACGTTTTATATTAGCAAGGATTAGACTTCTTCTCCCAATATCTACCAGCGTATTATGTAAATATATAGAAAGACCAATCACCAATATCTACCAGCGTATTATGTAAATATATAGAAAGACCAATCACCAATATCTACCAGAGTATTATGTAAATATATAATAGATAGATAGACTaatcggcagggtagcctagtggtttagagcgttgggccagtaaccggaaggttgcaagatcgaatcctccgagctgacaaggtacaaacaaatctgtcgttctcccactgttcccctgaacaaggcagttaacccaccgttcctaggccgtcattgtaaataagaatttgttcttaacctttatttaactaggcaagtcagttaaataaaaaataaaaaaaataaataaaataataaaatgtattaatgtttccaaatatttatattttatattcatggtgcagcaccaacaccaacatgTGTGTAAATGaagcatttctatgttttgtagtaaaaaaataagaagaagaagaccaagtgtttccaatgacatcatcagtgtGCGTCACGTGACTTTAAACAATTATGGAGGAGCCATTGCATGTCATTGGCAACGCTCGTAATTATATtgtttattacaacaacaacaacaaaaatagaaacgcgcCATTTTCTCACACGTTGATGTTGAGGtggtgatgaagatgatgaagatgaagtggtaaaaaaaatgtttgccatCTCTCTTTAATGCTGTCTTTAGTGGTTCTATCGACCCAAcagacccgtctctctctctcagttattATGGCACAGAGGATCCATTCCATCCATGATTGGTGCAGGACTGGTACAGGATTGGTACAGGACTGGTACAGGATTGGTGCAGGATTGGTACAGGACTGGTACAGGATTGGTACAGGATTGGTACAGGATTGGTGCAGGATTGGTACAGGACTGGTACAGGATTGGTACAGGACTGGTGCAGGATTGGTGCAGGATTGGTGCAGGATTGGTACAGGACTGGTACAGGATTGGTAAAGACAAGCATTAAGTGGAGTTGTTTTTTATGTTGTTTAGCATGGGCCATATTAAAAAGCTGTCATCTAAGATGCTTTTCTATCATTTATAGGTCTGTATTCATAAAGCAaccgagtaggagtgctgatctaggatcagtgtaGCCTTTTAGATTGTAGTGAATAAGAACTACATGGACAGAGAGGATCTGATccgagatcagcactcctactgtgagacgctttgtgaatataGGACCTGGAGCCTACCTCGTCCTTCATTAGTaacctcactcctcctctcctacctcctcctctcctacctcctcctcGTTTGggcagggagaaggggagagatggatggatcccagggaaagagggggagagggatgaataGAGTCcggggagagatgaatagagtccagggagagatggagagatgaatagagaccagggaaagatggatagatgaatagagaccagggagagatggatagatgaatagagaccagggagagatgcatagagaccagggagagatgcatagagaccagggagagatggagagagaccagggagagatgaatagagaccagggagagatgaatagagaccaGATGAATAGAGACCAGATGGATAGAGGccagggagagatgaatagagaccagggagagatgaatagagaccaGATGAATAGAGACCAGATGGATAGAGGccagggagagatgaatagagaccagggagagatgaatagagactaGATGAATAGAGACCAGATGGATAGAGaccagggagagatgaatagagagaccAGATGAATAGAGaccagggagagatgaatagagaccaGACGGATAGAGGccagggagagatggatagagaccAGGGAGAGGGATGTGTAGAGCTGGAGAGGAGCTCACAGGTTGGTCTCCCTCCTATCTTTACTAGGGGAAGGTTTAGGGGGATCCTTGGCGGTGGTAGCTTTCCCGTTCTTAGCTTCGACCGCCACCACTGGCTCTGCCGCTGCAGGGGAAACCATGGCAGCTACGGAACGTTTGGTCTGCTCCTCACTCCTCGCCTCGGGGCTGGGCTGTATGGGCGGAGCCTGTTCTGCTGAAGGTGGGGCTGTCAGCTCCTGCTGCTGTAGCTTGTGGGTCTGGAGGAGGCGGAGCTGAACGCGCAGTTCCAAGATGGCTTCCTGCTCCTCGTGGATGGCCTGGTTGAAGTGGGTGTTCT
>TU862272
CTACACCTTTATTTTTCAACTGGCATGGGAAGCTACGAAAGCCTTTTAACAATATGAAAATAACCTTATGGCGAAGATGAAACCACAGTGACGTGTCATATCCATTTCAATCGTGACAGATCCGTTAATAAACGATAACATTTGTAAAATCACATTTCCCCCGGCAACAGGATTTTCTCAGACCAACAAGTTCCAACGCTGTAGAACAGAGCGCGGTCACACTTCCTTCAGTTAATTCAGATCATTACTTACGTcaacaaaaacaacagaaatgCCGAAAAAACAACATAAGAGTTGAAAATACAGTATGTTTTACATTTTACAATAATGTACATGCACATCCTGCTGTGCCGTCTTGATGTCCTTCGCTTTCACCCATCACAAATTGACACCGACAGGTAAAGTAGCGTGTTTCCATTGTTCCAATGGTCATAGACTATGTATTCTGTAATGACTGACTTATAATGTTGACTTGCGCCCACTTATAACAAGCTCTTGTTTATTAGGGCagagaatgaaaaaaaaaaaaacgttaaaaaaaaaatgttttgcaacggaaagagaaaaaaaatgtgCATTTCTCATTGAACAAGTTAAGTTAGTGCCACCCCGTGTTCAAtttgttttcttccgtttggtgcccaaatgaacacaacccagtccTTCTGACCCTCTGTCAATAAGAGATGTAATTATGAATATGGAAAAAGGAAGGCAACATTTTACTTGAAGGGTACTACCTACATAAggacttcataacacattcataacccatccaTAAAACattcataagcactacataagCATTTCGTAACGCTTATCTCTTTGGGTTCTGAAATGTGTTCTGTAGATCATTCAAAAGGTTTGTATTAACAGGCACAGCAGTGCTCAGTGAAGTTGACATGTCCGTGCTGCTTCTTCAGCTTACCATCATCTACTATATATCATATTACTGAATAAATGGCATCAGGTAGGTACATTTAAACGTTTTATATTAGCAAGGATTAGACTTCTTCTCCCAATATCTACCAGCGTATTATGTAAATATATAGAAAGACCAATCACCAATATCTACCAGAGTATTATGTAAATATATAATAGATAGATAGACTaatcggcagggtagcctagtggtttagagcgttgggccagtaaccggaaggttgcaagatcgaatcctccgagctgacaaggtacaaacaaatctgtcgttctgcccctgaataaggcagttaacccaccgttccaaggccgtcattgaaaataagaat
>TU862273
CTACACCTTTATTTTTCAACTGGCATGGGAAGCTACGAAAGCCTTTTAACAATATGAAAATAACCTTATGGCGAAGATGAAACCACAGTGACGTGTCATATCCATTTCAATCGTGACAGATCCGTTAATAAACGATAACATTTGTAAAATCACATTTCCCCCGGCAACAGGATTTTCTCAGACCAACAAGTTCCAACGCTGTAGAACAGAGCGCGGTCACACTTCCTTCAGTTAATTCAGATCATTACTTACGTcaacaaaaacaacagaaatgCCGAAAAAACAACATAAGAGTTGAAAATACAGTATGTTTTACATTTTACAATAATGTACATGCACATCCTGCTGTGCCGTCTTGATGTCCTTCGCTTTCACCCATCACAAATTGACACCGACAGGTAAAGTAGCGTGTTTCCATTGTTCCAATGGTCATAGACTATGTATTCTGTAATGACTGACTTATAATGTTGACTTGCGCCCACTTATAACAAGCTCTTGTTTATTAGGGCagagaatgaaaaaaaaaaaaacgttaaaaaaaaaatgttttgcaacggaaagagaaaaaaaatgtgCATTTCTCATTGAACAAGTTAAGTTAGTGCCACCCCGTGTTCAAtttgttttcttccgtttggtgcccaaatgaacacaacccagtccTTCTGACCCTCTGTCAATAAGAGATGTAATTATGAATATGGAAAAAGGAAGGCAACATTTTACTTGAAGGGTACTACCTACATAAggacttcataacacattcataacccatccaTAAAACattcataagcactacataagCATTTCGTAACGCTTATCTCTTTGGGTTCTGAAATGTGTTCTGTAGATCATTCAAAAGGTTTGTATTAACAGGCACAGCAGTGCTCAGTGAAGTTGACATGTCCGTGCTGCTTCTTCAGCTTACCATCATCTACTATATATCATATTACTGAATAAATGGCATCAGGTAGGTACATTTAAACGTTTTATATTAGCAAGGATTAGACTTCTTCTCCCAATATCTACCAGCGTATTATGTAAATATATAGAAAGACCAATCACCAATATCTACCAGAGTATTATGTAAATATATAATAGATAGATAGACTaatcggcagggtagcctagtggtttagagcgttgggccagtaaccggaaggttgcaagatcgaatcctccgagctgacaaggtacaaacaaatctgtcgttctcccactgttcccctgaacaaggcagttaacccaccgttcctaggccgtcattgtaaataagaatttgttcttaacctttatttaactaggcaagtcagttaaataaaaaataaaaaaaataaataaaataataaaatgtattaatgtttccaaatatttatattttatattcatggtgcagcaccaacaccaacatgTGTGTAAATGaagcatttctatgttttgtagtaaaaaaataagaagaagaagaccaagtgtttccaatgacatcatcagtgtGCGTCACGTGACTTTAAACAATTATGGAGGAGCCATTGCATGTCATTGGCAACGCTCGTAATTATATtgtttattacaacaacaacaacaaaaatagaaacgcgcCATTTTCTCACACGTTGATGTTGAGGtggtgatgaagatgatgaagatgaagtggtaaaaaaaatgtttgccatCTCTCTTTAATGCTGTCTTTAGTGGTTCTATCGACCCAAcagacccgtctctctctctcagttattATGGCACAGAGGATCCATTCCATCCATGATTGGTGCAGGACTGGTACAGGATTGGTACAGGACTGGTACAGGATTGGTGCAGGATTGGTACAGGACTGGTACAGGATTGGTGCAGGACTGGTACAGGATTGGTACAGGACTGGTACAGGATTGGTACAGGATTGGTACAGGATTGGTGCAGGATTGGTACAGGACTGGTACAGGATTGGTACAGGACTGGTGCAGGATTGGTGCAGGATTGGTGCAGGATTGGTACAGGACTGGTACAGGATTGGTAAAGACAAGCATTAAGTGGAGTTGTTTTTTATGTTGTTTAGCATGGGCCATATTAAAAAGCTGTCATCTAAGATGCTTTTCTATCATTTATAGGTCTGTATTCATAAAGCAaccgagtaggagtgctgatctaggatcagtgtaGCCTTTTAGATTGTAGTGAATAAGAACTACATGGACAGAGAGGATCTGATccgagatcagcactcctactgtgagacgctttgtgaatataGGACCTGGAGCCTACCTCGTCCTTCATTAGTaacctcactcctcctctcctacctcctcctctcctacctcctcctcGTTTGggcagggagaaggggagagatggatggatcccagggaaagagggggagagggatgaataGAGTCcggggagagatgaatagagtccagggagagatggagagatgaatagagaccagggaaagatggatagatgaatagagaccagggagagatggatagatgaatagagaccagggagagatgcatagagaccagggagagatgcatagagaccagggagagatggagagagaccagggagagatgaatagagaccagggagagatgaatagagaccaGATGAATAGAGACCAGATGGATAGAGGccagggagagatgaatagagaccagggagagatgaatagagaccaGATGAATAGAGACCAGATGGATAGAGGccagggagagatgaatagagaccagggagagatgaatagagactaGATGAATAGAGACCAGATGGATAGAGaccagggagagatgaatagagagaccAGATGAATAGAGaccagggagagatgaatagagaccaGACGGATAGAGGccagggagagatggatagagaccAGGGAGAGGGATGTGTAGAGCTGGAGAGGAGCTCACAGGTTGGTCTCCCTCCTATCTTTACTAGGGGAAGGTTTAGGGGGATCCTTGGCGGTGGTAGCTTTCCCGTTCTTAGCTTCGACCGCCACCACTGGCTCTGCCGCTGCAGGGGAAACCATGGCAGCTACGGAACGTTTGGTCTGCTCCTCACTCCTCGCCTCGGGGCTGGGCTGTATGGGCGGAGCCTGTTCTGCTGAAGGTGGGGCTGTCAGCTCCTGCTGCTGTAGCTTGTGGGTCTGGAGGAGGCGGAGCTGAACGCGCAGTTCCAAGATGGCTTCCTGCTCCTCGTGGATGGCCTGGTTGAAGTGGGTGTTCT

Function

symbol description
ralbp1 Predicted to enable GTPase activator activity. Predicted to be involved in endocytosis; positive regulation of GTPase activity; and small GTPase mediated signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be active in membrane. Is expressed in central nervous system; midbrain; midbrain neural keel; and neural plate. Human ortholog(s) of this gene implicated in pancreatic adenocarcinoma. Orthologous to human RALBP1 (ralA binding protein 1).

NR:

description
ralA-binding protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU862269 False 1317 lncRNA 0.38 2 87846933 87866192
TU862270 False 1284 lncRNA 0.37 2 87846933 87851821
TU862271 False 3233 lncRNA 0.43 2 87846933 87850341
TU862272 False 1271 lncRNA 0.38 3 87846933 87866192
TU862273 True 3231 lncRNA 0.43 3 87846933 87850341

Neighbor

gene id symbol gene type direction distance location
LOC110513441 apcdd1 coding upstream 71486 87745792 ~ 87775447 (+)
LOC110512127 LOC106591122 coding upstream 155190 87687931 ~ 87691743 (+)
LOC110512128 LOC106596732 coding upstream 175829 87569072 ~ 87671104 (+)
LOC110519501 LOC106569361 coding upstream 297095 87532950 ~ 87549838 (+)
LOC110530822 LOC106596771 coding upstream 440488 87003179 ~ 87406445 (+)
acss2l LOC106596660 coding downstream 151028 88017220 ~ 88059703 (+)
LOC110510807 LOC106569716 coding downstream 759249 88625441 ~ 88642762 (+)
LOC110510805 LOC105030507 coding downstream 780208 88646400 ~ 88667320 (+)
LOC118965580 NA coding downstream 1020642 88886834 ~ 88903834 (+)
slc25a24l LOC106569755 coding downstream 1208432 89074624 ~ 89139486 (+)
G758909 NA non-coding upstream 9090 87837070 ~ 87837843 (+)
G758908 NA non-coding upstream 12453 87833754 ~ 87834480 (+)
G758886 NA non-coding upstream 50526 87792997 ~ 87796407 (+)
G758877 NA non-coding upstream 75172 87771001 ~ 87771761 (+)
G758863 NA non-coding upstream 119088 87727425 ~ 87727845 (+)
G758925 NA non-coding downstream 11751 87877943 ~ 87878785 (+)
G758926 NA non-coding downstream 19010 87885202 ~ 87887096 (+)
G758935 NA non-coding downstream 40585 87906777 ~ 87907653 (+)
G758961 NA non-coding downstream 59571 87925763 ~ 87927785 (+)
G758962 NA non-coding downstream 62135 87928327 ~ 87933847 (+)
G758866 NA other upstream 113794 87732294 ~ 87733139 (+)
G758531 NA other upstream 129215 87716817 ~ 87717718 (+)
G758259 LOC106569763 other upstream 912922 86933446 ~ 86934011 (+)
ly97.3 LOC106596797 other upstream 926424 86912176 ~ 86920513 (+)
G758045 NA other upstream 1211473 86634784 ~ 86635460 (+)
G758892 NA other downstream 8928 87875120 ~ 87876684 (+)
G758976 ankrd12 other downstream 99500 87959523 ~ 87971929 (+)
G758988 NA other downstream 125778 87991970 ~ 87995145 (+)
G759020 LOC106569827 other downstream 215829 88082021 ~ 88106947 (+)
G759031 LOC106569827 other downstream 242814 88109006 ~ 88110300 (+)

Expression


Co-expression Network