G758965


Basic Information

Item Value
gene id G758965
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87937191 ~ 87982296 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU862374
attgtttttcttactttttcttttaatatatatattttaggtattttcttaaaactgcattgatggttaagggcttgtaagtaagcatttcactgtaaggtctaccacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctacctacacctgttgtattcagcatttcactgtaaggtctacctacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcagttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttccctgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaagatctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcagttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttccctgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactataaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattccgcatttcactataaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactataaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactataaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttg
>TU862375
attgtttttcttactttttcttttaatatatatattttaggtattttcttaaaactgcattgatggttaagggcttgtaagtaagcatttcactgtaaggtctaccacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctacctacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactatacctgttgtattcagcatttcactgtaaggtctacctacacctgttgtattcagcacttcACTGTggtgtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagtatctcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgcattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgcgaagtctactacacctgttgtattcagcatttcactgtaaggtctgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgcgaagtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcgggctcATGTAAAcaaatacaacttgatttgaaC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU862374 False 1448 lncRNA 0.40 2 87937191 87982296
TU862375 True 1268 lncRNA 0.40 3 87937191 87939675

Neighbor

gene id symbol gene type direction distance location
LOC110513441 apcdd1 coding upstream 161744 87745792 ~ 87775447 (+)
LOC110512127 LOC106591122 coding upstream 245448 87687931 ~ 87691743 (+)
LOC110512128 LOC106596732 coding upstream 266087 87569072 ~ 87671104 (+)
LOC110519501 LOC106569361 coding upstream 387353 87532950 ~ 87549838 (+)
LOC110530822 LOC106596771 coding upstream 530746 87003179 ~ 87406445 (+)
acss2l LOC106596660 coding downstream 34924 88017220 ~ 88059703 (+)
LOC110510807 LOC106569716 coding downstream 643145 88625441 ~ 88642762 (+)
LOC110510805 LOC105030507 coding downstream 664104 88646400 ~ 88667320 (+)
LOC118965580 NA coding downstream 904538 88886834 ~ 88903834 (+)
slc25a24l LOC106569755 coding downstream 1092328 89074624 ~ 89139486 (+)
G758962 NA non-coding upstream 3344 87928327 ~ 87933847 (+)
G758961 NA non-coding upstream 9406 87925763 ~ 87927785 (+)
G758935 NA non-coding upstream 29538 87906777 ~ 87907653 (+)
G758915 NA non-coding upstream 29990 87851604 ~ 87907201 (+)
G758989 NA non-coding downstream 14947 87997243 ~ 87998848 (+)
G758954 NA non-coding downstream 19250 88001546 ~ 88010619 (+)
G758999 NA non-coding downstream 37837 88020133 ~ 88021560 (+)
G759005 NA non-coding downstream 51332 88033628 ~ 88034819 (+)
G759013 NA non-coding downstream 72795 88055091 ~ 88057598 (+)
G758892 NA other upstream 60507 87875120 ~ 87876684 (+)
G758866 NA other upstream 204052 87732294 ~ 87733139 (+)
G758531 NA other upstream 219473 87716817 ~ 87717718 (+)
G758259 LOC106569763 other upstream 1003180 86933446 ~ 86934011 (+)
ly97.3 LOC106596797 other upstream 1016682 86912176 ~ 86920513 (+)
G758988 NA other downstream 9674 87991970 ~ 87995145 (+)
G759020 LOC106569827 other downstream 99725 88082021 ~ 88106947 (+)
G759031 LOC106569827 other downstream 126710 88109006 ~ 88110300 (+)
G759556 NA other downstream 715678 88697974 ~ 88701419 (+)
G759598 NA other downstream 878783 88861079 ~ 88861828 (+)

Expression


Co-expression Network