G759020 (LOC106569827)


Basic Information

Item Value
gene id G759020
gene name LOC106569827
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88082021 ~ 88106947 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU862451
tgtattgcatacatatatatacacatgtggaACTATGAGTAAATCAAGTAGAGGCACATCTGACGGTAATGTTTGGATGATGTCATTGTTTTGTTGTTACAGTACTATCCAGGTTCTTTTCATTCCGGAGTTGAAAGTTTTCAGTTCCAGTACTTTTGAGTTCCTGGTTGGTTAGCTGGTGCTACAGGGGCTCAACCCTGTTACAAATCCCCCTCCCCCTAGGAATCCCTAcgagagtaggagggagggggGTCTGAGGTACCCTGTCTAGTCAGGCTCAATGTGgataagagaagaggaggagtagggaggagcaggagagaggagtagggaggagtagggaggagtagagaagaggagTAGGGAGGGGGGTCTGAGGTACCCTGTCTAGTCAGtagggaggagcaggagagagaagtagggaggagtagggaggagcaggagtagggaggagcaggagagaggagggaggagtggagaagaggaggagtaggagagaggaggagtagggaggagtggagaagaggaggagggaggagtaaggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagggaggagtagggaggagtggagaagaggaggagggaggggggtctGAGGTACCCTGTCTAGTCAGGCTCAATGTggacaagagaagaggaggagtaaggaggagcaggagaagaggaggagggaggagtggagaagaggaggagggaggaggagcaggagagaggagtagggaggagcaggagaagaggaggagggaggagcaggATAAGAGgcggagggaggagtggagaagaggaggagtagggaggagcaggagagaggaggagtggagaagaggaggagtacggaggagcaggagagaggagtagggaggagcaggagaagaggaggagggaggagtggagaagaggaggagtagggaggagtggagtagaggaggagtggagaagaggaggagtagggaggagcaggagagaggagtagggaggagcaggagaaggggaggagagaggagtggagaagaggaggagtagggaggagtggagaagaggagtagtagggaggagcaggagagaagagtagggaggagcaagagagaggagtagggaggagcaggagaagaggaggagggaggagtggagaagagggaggagtagggaggagcaggagagaggaggagtagggaggagcggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagtggagtagggaggagcaggagaagaggaggagggaggagtggagaagaggaggagtagggaagagcaggagagaggaggagtggagaagaggaggagtacggaggagcaggagagaggagtagggaggagcaggagaagaggaggagggaggagtggagaagaggaggagtagggaggagtggagtagaggaggagtggagaagaggaggagtagggaggagcaggagaagaggaggagggaggagtggagaagaggaggagtagggagtcgaggagaagaggaggagtagggaggagtggagaagtggagtagggaggagtagggaggagtggagaagtggaggagtagggaggagtggagaacaggaggagtagggaAGAGTTGAGAAGAGGATGAGTAGGGAGGAgtggaaaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtagggaggagtggagaagtggaggagtagggaggagtggagaagtggagtagtagggaggagtggagaagaggaggagtagggaagAGTTGAGAAGAGGATGAGTAGGGATGAgtggaaaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggactggagaagaggaggagtagggaggactggagaagtggaggagtagggaggagtggagaagaggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggactggagaagtggaggagtagggaggagtggagaagaggaggagtggagaagaggaggagtagggaggagtaaggaggagtggagaagaggagtggagaagaggagtagggaggagtggaggagaggagtagggagaAGTAAgtaggagtggagaagaggaggagtggagaagaggaggagtatggaggagcaggagagaggagtagggaggagcaggagaagaggaggagtagggaggagtggagtcgaggaggagtggagaagaggaggagtagggaggagcaggaaaagaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagtggagtagggaggagtagggaggagtggagaagagggaggagtagggaggagcaggagagaggaggagtagggaggagcggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggagtaGTGGAGAAGTGGAGtagggaggagcaggagaagaggaggagggaggagtggagaagaggaggagtagggaagagcaggagagaggaggagtggagaagaggaggagtacggaggagcaggagagaggagtagggaggagcaggagaagaggaggagggaggagtggagaagaggaggagtagggaggagtggagtagaggaggagtggagaagaggaggagtagggaggagcaggagaagaggaggagggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagtggagtagggaggagtagggaggagtggagaagtggaggagtagggaggagtggagaaggggagtagtagggaggagtggagaagaggaggagtagggaagAGTTGAGAAGAGGATGAGTAGGGAGGAgtggaaaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggactggagaagtggaggagtagggaggagtggagaagaggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggactggagaagtggaggagtagggaggagtggagaagaggaggagtggagaagaggaggagtagggaggagtaaggaggagtggagaagaggagtggagaagaggagtagggaggagtggaggagaggagtagggagaAGTAAgtaggagtggagaagaggaggagtatggaggagcaggagagaggagtagggaggagcaggagaagaggaggagtagggaggagtggagtcgaggaggagtggagaagaggaggagtagggaggagcaggaaaagaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagtggagtagggaggagtagggaggagtggagaagagggaggagtagggaggagcaggagagaggaggagtagggaggagcggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagaggagtggagaataggaggagtagggaggagtaaggaggagtggagaagaggaggagtggagaagaggaggagtagggaggagtggaggagaggagtagggagaAGTAAgtaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtggagaagaggagagagtgtggaCAGTTCCATCAGGAGCGaagcaggagggaggagagggagtagagaggaggactaTGAAAGATGGGTCTGAGGTACTGGCTGGGGTAtggtgagaaagagagtggagcGAGTAAAGAGGGAGTTAAGGAGAACAGGGGTATGGTGATTGTTCCTGTTGTGATTCTGCTGGTCCAGTCTCATCCAGGTCTGGTATAGAGGtggtcccagtcccagtcttacTGGTCCCAGTCACCATggggaaggtgaaccttcgttcTGTGACGTCTAGCCAGCCTCGGGGGGAGGAGGGGGCTGCCCAGCGGGAGGGGGGGCGGCGGTTGGCTGGCCTCGCCGGGCGCAGGAAACACGACTCCAGGGGCGGAGCCACCGGGGAGCGAGGGAGGTCCTTCTCCATACACCCCGCCTGGTTCCTGTCTCCTTCTCCATGCCTCCCCTCTCTGCTCTGGCCGGCAGACCccagtctcttctcctccctgaaGCTCTGTTCCAACAGCTTCTTGTTCAGCAGACGGGCTGCGTTCTCTGCCAGCGTGTATCCAGGCGGGGCAGACAGGTCCTGGCGTATACTGACCACCTCCggtgtcctctcccctcctgttcccCCCGGCCCTCCCTGGGTGTCTACTATCAGCTGCACCGGGCTGGGAGAACGCCCGCGGACATTCCTCAGGAACTCCTGGGCTGCTCCAAGGGACCTGGGGTCTGAGGGTGGTAGGCTGGGTACCCCTGGCCCCCCGGGAGGTGAGGGGTCAGGGGGAGCGGGGCGGGTGCGGCTTGGGGACTTGGTGAATTTGGACTGCAGGGGTTCGTAAGCTACGGGGGTGTGGTCTATGATGTTGAAGAGGCTGGACAGGCCGTCGTTAATGGTGGTGTGGACGGGAGAGTCCCTGGTGGTGGTGGAACGAGCCCAGGCCGACTCAGAGGCTCCCTGTTATTATACATTAACACTTAGAGAGGCCTCAGGCAGCTGACTACAACAATACGTAGAGAAATATGACTGAGGATTCAAAACAATAACTACCTTCTGGGGGGTGGTGGGAGTCGGAACCCTGGGGCCGGTCGTGGAGCTGGAGGAGGCCCCCACAGGGAGGTCAGCCTTCGATGATGTCGACAACTTCCTCTGGAGCTTAGGAGAACCGTACTTAGGAGAACAACATGTCCGCTCGAACTTGGACTGGACTACAGGAGAGTACTGTATCTTGCGGATGTTtctggagggggaggagatgggggtggAGCCTCCTCCTATAGGGGTGAGGCAGCGGTGGGGGGAGCTGGTGAGGTTGCGGAGGATGTCAGTTTGTAAGCCCACACTGATGGTCTGGGTGGTCTGGGTTCCCCGAGTAGTGAAACCGTTGGTTTGACACGCCGTGTCTC
>TU862452
tgtattgcatacatatatatacacatgtggaACTATGAGTAAATCAAGTAGAGGCACATCTGACGGTAATGTTTGGATGATGTCATTGTTTTGTTGTTACAGTACTATCCAGGTTCTTTTCATTCCGGAGTTGAAAGTTTTCAGTTCCAGTACTTTTGAGTTCCTGGTTGGTTAGCTGGTGCTACAGGGGCTCAACCCTGTTACAAATCCCCCTCCCCCTAGGAATCCCTAcgagagtaggagggagggggGTCTGAGGTACCCTGTCTAGTCAGGCTCAATGTGgataagagaagaggaggagtagggaggagcaggagagaggagtagggaggagtagggaggagtagagaagaggagTAGGGAGGGGGGTCTGAGGTACCCTGTCTAGTCAGtagggaggagcaggagagagaagtagggaggagtagggaggagcaggagtagggaggagcaggagagaggagggaggagtggagaagaggaggagtaggagagaggaggagtagggaggagtggagaagaggaggagggaggagtaaggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagggaggagtagggaggagtggagaagaggaggagggaggggggtctGAGGTACCCTGTCTAGTCAGGCTCAATGTggacaagagaagaggaggagtaaggaggagcaggagaagaggaggagggaggagtggagaagaggaggagggaggaggagcaggagagaggagtagggaggagcaggagaagaggaggagggaggagcaggATAAGAGgcggagggaggagtggagaagaggaggagtagggaggagcaggagagaggaggagtggagaagaggaggagtacggaggagcaggagagaggagtagggaggagcaggagaagaggaggagggaggagtggagaagaggaggagtagggaggagtggagtagaggaggagtggagaagaggaggagtagggaggagcaggagagaggagtagggaggagcaggagaaggggaggagagaggagtggagaagaggaggagtagggaggagtggagaagaggagtagtagggaggagcaggagagaagagtagggaggagcaagagagaggagtagggaggagcaggagaagaggaggagggaggagtggagaagagggaggagtagggaggagcaggagagaggaggagtagggaggagcggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagtggagtagggaggagcaggagaagaggaggagggaggagtggagaagaggaggagtagggaagagcaggagagaggaggagtggagaagaggaggagtacggaggagcaggagagaggagtagggaggagcaggagaagaggaggagggaggagtggagaagaggaggagtagggaggagtggagtagaggaggagtggagaagaggaggagtagggaggagcaggagaagaggaggagggaggagtggagaagaggaggagtagggagtcgaggagaagaggaggagtagggaggagtggagaagtggagtagggaggagtagggaggagtggagaagtggaggagtagggaggagtggagaacaggaggagtagggaAGAGTTGAGAAGAGGATGAGTAGGGAGGAgtggaaaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtagggaggagtggagaagtggaggagtagggaggagtggagaagtggagtagtagggaggagtggagaagtggaggagtagggaggagtggaggagtagggaggagtggagaagaggagtggagaataggaggagtagggaggagtaaggaggagtggagaagaggaggagtggagaagaggaggagtagggaggagtggaggagaggagtagggagaAGTAAgtaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtggagaagaggagagagtgtggaCAGTTCCATCAGGAGCGaagcaggagggaggagagggagtagagaggaggactaTGAAAGATGGGTCTGAGGTACTGGCTGGGGTAtggtgagaaagagagtggagcGAGTAAAGAGGGAGTTAAGGAGAACAGGGGTATGGTGATTGTTCCTGTTGTGATTCTGCTGGTCCAGTCTCATCCAGGTCTGGTATAGAGGtggtcccagtcccagtcttacTGGTCCCAGTCACCATggggaaggtgaaccttcgttcTGTGACGTCTAGCCAGCCTCGGGGGGAGGAGGGGGCTGCCCAGCGGGAGGGGGGGCGGCGGTTGGCTGGCCTCGCCGGGCGCAGGAAACACGACTCCAGGGGCGGAGCCACCGGGGAGCGAGGGAGGTCCTTCAGGAGGAAgtagatgtgagagagagagagagagagagagagagagacaaaatagCTTCCTATATTCATAGGTTTTCATGATGATTATTTTAAGAATTAGAAAAAGACATTACCCAAGACAGAAGAAAAGAAGTATTAACAAAAGTAAGTGTGATTAAAacagaaaaacaaataatgaCCACAATATAGATCAGGAGGAAACACCATGTGGTGGAACTACAGTGggatgaaacaggtggaggaactacagggtgatgaaacaggtggagaaactacagggtgatgaaacaggtggagaaactacagggtgatgaaacaggtggtggaactacagggtgatgaaacaggtggtgaaactacagggtgatgaaacaggtggaggaactacagggtgatgaaacaggtggaggaactacagtgtgatgaaacaggtgggaggaactacagggtgatgaaacaggtggaggaactacagggtgatgaaacaggtggagaaactacagggtgatgaaacaggtggtggaactacagggtgatgaaacaggtggagaaactacagggtgatgaaacaggtggaggaactacagggtgatgaaacaggtggaggaactacagggtgatgaaacaggtggaggaactacagtgtgatgaaacaggtggaggagctacagggtgatgaaacaggtggaggaactacagtgtgatgaaacaggtggaggaactacagggtgatgaaacaggtggaggaactacagtgtgatgaaacaggtggaggagctacagggtgatgaaacaggtgggaggaactacagggtgatgaaacaggtggaggaactacagggtgatgaaacaggtgggaggaactacagtgtgatgaaacaggtggaggaactacagtgtgatgaaacaggtggagaAGCTAGTTAGTTAGCATGAATGATGATGATCACACAGCTAC
>TU862454
tgtattgcatacatatatatacacatgtggaACTATGAGTAAATCAAGTAGAGGCACATCTGACGGTAATGTTTGGATGATGTCATTGTTTTGTTGTTACAGTACTATCCAGGTTCTTTTCATTCCGGAGTTGAAAGTTTTCAGTTCCAGTACTTTTGAGTTCCTGGTTGGTTAGCTGGTGCTACAGGGGCTCAACCCTGTTACAAATCCCCCTCCCCCTAGGAATCCCTAcgagagtaggagggagggggGTCTGAGGTACCCTGTCTAGTCAGGCTCAATGTGgataagagaagaggaggagtagggaggagcaggagagaggagtagggaggagtagggaggagtagagaagaggagTAGGGAGGGGGGTCTGAGGTACCCTGTCTAGTCAGtagggaggagcaggagagagaagtagggaggagtagggaggagcaggagtagggaggagcaggagagaggagggaggagtggagaagaggaggagtaggagagaggaggagtagggaggagtggagaagaggaggagggaggagtaaggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagggaggagtagggaggagtggagaagaggaggagggaggggggtctGAGGTACCCTGTCTAGTCAGGCTCAATGTggacaagagaagaggaggagtaaggaggagcaggagaagaggaggagggaggagtggagaagaggaggagggaggaggagcaggagagaggagtagggaggagcaggagaagaggaggagggaggagcaggATAAGAGgcggagggaggagtggagaagaggaggagtagggaggagcaggagagaggaggagtggagaagaggaggagtacggaggagcaggagagaggagtagggaggagcaggagaagaggaggagggaggagtggagaagaggaggagtagggaggagtggagtagaggaggagtggagaagaggaggagtagggaggagcaggagagaggagtagggaggagcaggagaaggggaggagagaggagtggagaagaggaggagtagggaggagtggagaagaggagtagtagggaggagcaggagagaagagtagggaggagcaagagagaggagtagggaggagcaggagaagaggaggagggaggagtggagaagagggaggagtagggaggagcaggagagaggaggagtagggaggagcggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagtggagtagggaggagcaggagaagaggaggagggaggagtggagaagaggaggagtagggaagagcaggagagaggaggagtggagaagaggaggagtacggaggagcaggagagaggagtagggaggagcaggagaagaggaggagggaggagtggagaagaggaggagtagggaggagtggagtagaggaggagtggagaagaggaggagtagggaggagcaggagaagaggaggagggaggagtggagaagaggaggagtagggagtcgaggagaagaggaggagtagggaggagtggagaagtggagtagggaggagtagggaggagtggagaagaggagtagggaggagtagggaggagtggagaagtggaggagtagggaggagtggagaagtggagtagtagggaggagtggagaagtggaggagtagggaggagtggaggagtagggaggagtggagaagaggagtggagaataggaggagtagggaggagtaaggaggagtggagaagaggaggagtggagaagaggaggagtagggaggagtggaggagaggagtagggagaAGTAAgtaggagtggaggaggagagagtgtggaCAGTTCCATCAGGAGCGaagcaggagggaggagagggagtagagaggaggactaTGAAAGATGGGTCTGAGGTACTGGCTGGGGTAtggtgagaaagagagtggagcGAGTAAAGAGGGAGTTAAGGAGAACAGGGGTATGGTGATTGTTCCTGTTGTGATTCTGCTGGTCCAGTCTCATCCAGGTCTGGTATAGAGGtggtcccagtcccagtcttacTGGTCCCAGTCACCATggggaaggtgaaccttcgttcTGTGACGTCTAGCCAGCCTCGGGGGGAGGAGGGGGCTGCCCAGCGGGAGGGGGGGCGGCGGTTGGCTGGCCTCGCCGGGCGCAGGAAACACGACTCCAGGGGCGGAGCCACCGGGGAGCGAGGGAGGTCCTTCTCCATACACCCCGCCTGGTTCCTGTCTCCTTCTCCATGCCTCCCCTCTCTGCTCTGGCCGGCAGACCccagtctcttctcctccctgaaGCTCTGTTCCAACAGCTTCTTGTTCAGCAGACGGGCTGCGTTCTCTGCCAGCGTGTATCCAGGCGGGGCAGACAGGTCCTGGCGTATACTGACCACCTCCggtgtcctctcccctcctgttcccCCCGGCCCTCCCTGGGTGTCTACTATCAGCTGCACCGGGCTGGGAGAACGCCCGCGGACATTCCTCAGGAACTCCTGGGCTGCTCCAAGGGACCTGGGGTCTGAGGGTGGTAGGCTGGGTACCCCTGGCCCCCCGGGAGGTGAGGGGTCAGGGGGAGCGGGGCGGGTGCGGCTTGGGGACTTGGTGAATTTGGACTGCAGGGGTTCGTAAGCTACGGGGGTGTGGTCTATGATGTTGAAGAGGCTGGACAGGCCGTCGTTAATGGTGGTGTGGACGGGAGAGTCCCTGGTGGTGGTGGAACGAGCCCAGGCCGACTCAGAGGCTCCCTGTTATTATACATTAACACTTAGAGAGGCCTCAGGCAGCTGACTACAACAATACGTAGAGAAATATGACTGAGGATTCAAAACAATAACTACCTTCTGGGGGGTGGTGGGAGTCGGAACCCTGGGGCCGGTCGTGGAGCTGGAGGAGGCCCCCACAGGGAGGTCAGCCTTCGATGATGTCGACAACTTCCTCTGGAGCTTAGGAGAACCGTACTTAGGAGAACAACATGTCCGCTCGAACTTGGACTGGACTACAGGAGAGTACTGTATCTTGCGGATGTTtctggagggggaggagatgggggtggAGCCTCCTCCTATAGGGGTGAGGCAGCGGTGGGGGGAGCTGGTGAGGTTGCGGAGGATGTCAGTTTGTAAGCCCACACTGATGGTCTGGGTGGTCTGGGTTCCCCGAGTAGTGAAACCGTTGGTTTGACACGCCGTGTCTC

Function

NR:

description
PREDICTED: microtubule cross-linking factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU862451 False 5365 TUCP 0.58 2 88082021 88106947
TU862452 False 3461 lncRNA 0.54 7 88082021 88087807
TU862454 True 3315 TUCP 0.58 6 88082021 88106947

Neighbor

gene id symbol gene type direction distance location
acss2l LOC106596660 coding upstream 22318 88017220 ~ 88059703 (+)
LOC110513441 apcdd1 coding upstream 306574 87745792 ~ 87775447 (+)
LOC110512127 LOC106591122 coding upstream 390278 87687931 ~ 87691743 (+)
LOC110512128 LOC106596732 coding upstream 410917 87569072 ~ 87671104 (+)
LOC110519501 LOC106569361 coding upstream 532183 87532950 ~ 87549838 (+)
LOC110510807 LOC106569716 coding downstream 537634 88625441 ~ 88642762 (+)
LOC110510805 LOC105030507 coding downstream 558593 88646400 ~ 88667320 (+)
LOC118965580 NA coding downstream 799027 88886834 ~ 88903834 (+)
slc25a24l LOC106569755 coding downstream 986817 89074624 ~ 89139486 (+)
fubp1 LOC106569753 coding downstream 1007029 89094836 ~ 89113049 (+)
G759019 NA non-coding upstream 190 88080980 ~ 88081831 (+)
G759018 NA non-coding upstream 1553 88078082 ~ 88080468 (+)
G759017 NA non-coding upstream 4424 88077240 ~ 88077597 (+)
G759016 NA non-coding upstream 9930 88071829 ~ 88072091 (+)
G759015 NA non-coding upstream 24798 88056003 ~ 88057223 (+)
G759055 NA non-coding downstream 81257 88169064 ~ 88175409 (+)
G759064 NA non-coding downstream 133748 88221555 ~ 88224684 (+)
G759080 NA non-coding downstream 163484 88251291 ~ 88251637 (+)
G759085 NA non-coding downstream 176146 88263953 ~ 88264693 (+)
G759089 NA non-coding downstream 188682 88276489 ~ 88277177 (+)
G758988 NA other upstream 86876 87991970 ~ 87995145 (+)
G758976 ankrd12 other upstream 110092 87959523 ~ 87971929 (+)
G758892 NA other upstream 205337 87875120 ~ 87876684 (+)
G758866 NA other upstream 348882 87732294 ~ 87733139 (+)
G758531 NA other upstream 364303 87716817 ~ 87717718 (+)
G759031 LOC106569827 other downstream 21199 88109006 ~ 88110300 (+)
G759556 NA other downstream 610167 88697974 ~ 88701419 (+)
G759598 NA other downstream 773272 88861079 ~ 88861828 (+)
LOC118965583 LOC106569839 other downstream 1480196 89560138 ~ 89659347 (+)
G759013 NA non-coding upstream 24423 88055091 ~ 88057598 (+)

Expression


Co-expression Network