G759598


Basic Information

Item Value
gene id G759598
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88861079 ~ 88861828 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU863229
CAGTTAAAACACAGTTGCAGTCAAAAGAGGCAGGAAAAGATGGTAGTTCTCTGGTAGTGAAGCAAAAAAGGCAAGAGATTCCAAACTCTAAAGAGATCCTAAGCATCCTGCGTTCCCAATATGCAGGTTTGGTAGATcacttgaaagagagagagaatttgaaaAAGCCTTCAGACGTGCAACAATTCTTAAGAGTAgagtttggaaagaaaacacagaGATTCCAAGAGGTGAAGAAAGTGAAGAGACTAATGGAGCTGAGTGCTTCTGTTTGTCAGGTGAGAATTGAAGGGACACCAAAAGGAACTGGCTTCCTTCTGTTTAAAAAGTTCATCCTTACAAACGCCCATGTTGTCCATCAAATCTATGAGCCGATAACTAACAAGCTACAACAATCGGTAACAGTCACGTTTGACTTTGAAGACCTGGGTGAGAGAACGCAGCAGATACCAGTGCAAAGTGAGGTTGTAGCCTATGGAAAAGTTGA
>TU863230
CAGTTAAAACACAGTTGCAGTCAAAAGAGGCAGGAAAAGATGGTAGTTCTCTGGTAGTGAAGCAAAAAAGGCAAGAGATTCCAAACTCTAAAGAGATCCTAAGCATCCTGCGTTCCCAATATGCAGGTTTGGTAGATcacttgaaagagagagagaatttgaaaAAGCCTTCAGACGTGCAACAATTCTTAAGAGTAgagtttggaaagaaaacacagaGATTCCAAGAGGTGAAGAAAGTGAAGAGACTAATGGAGCTGAGTGCTTCTGTTTGTCAGGTGAGAATTGAAGGGACACCAAAAGGAACTGGCTTCCTTCTGTTTAAAAAGTTCATCCTTACAAACGCCCATGTTGTCCATCAAATCTATGAGCCGATAACTAACAAGCTACAACAATCGGTAACAGTCACGTTTGACTTTGAAGACCTGGGTGAGAGAACGCAGCAGATACCAGTGCAAAGTGAGGTTGTAGCCTATGGAAAAGTTGATTTGGGTTGTGTTGACTTTGCTTTGCTGGAGCTTAGCTCAGATCCTGACATCATCTTGCCTTCAAGCTTGCTTGACAGCTTCAGCTTTCCGTCTCTAGAGGGTGGAATCTGCATCGTCGGCCACCCCGAGGGCGGGGTGAAAAAGACAGACCCCTGCTTTATCATTCAACATGGAGATCGTAAACAAGCTGTAGAAAAACATGGAACAGAAAATGAGGAATTCTTACATGTCATAAACAACAGATATTTTGAGGAGAAATGGG
>TU863231
tttggaaagaaaacacagaGATTCCAAGAGGTGAAGAAAGTGAAGAGACTAATGGAGCTGAGTGCTTCTGTTTGTCAGGTGAGAATTGAAGGGACACCAAAAGGAACTGGCTTCCTTCTGTTTAAAAAGTTCATCCTTACAAACGCCCATGTTGTCCATCAAATCTATGAGCCGATAACTAACAAGCTACAACAATCGGTAACAGTCACGTTTGACTTTGAAGACCTGGGTGAGAGAACGCAGCAGATACCAGTGCAAAGTGAGGTTGTAGCCTATGGAAAAGTTGA
>TU863232
tttggaaagaaaacacagaGATTCCAAGAGGTGAAGAAAGTGAAGAGACTAATGGAGCTGAGTGCTTCTGTTTGTCAGGTGAGAATTGAAGGGACACCAAAAGGAACTGGCTTCCTTCTGTTTAAAAAGTTCATCCTTACAAACGCCCATGTTGTCCATCAAATCTATGAGCCGATAACTAACAAGCTACAACAATCGGTAACAGTCACGTTTGACTTTGAAGACCTGGGTGAGAGAACGCAGCAGATACCAGTGCAAAGTGAGGTTGTAGCCTATGGAAAAGTTGATTTGGGTTGTGTTGACTTTGCTTTGCTGGAGCTTAGCTCAGATCCTGACATCATCTTGCCTTCAAGCTTGCTTGACAGCTTCAGCTTTCCGTCTCTAGAGGGTGGAATCTGCATCGTCGGCCACCCCGAGGGCGGGGTGAAAAAGACAGACCCCTGCTTTATCATTCAACATGGAGATCGTAAACAAGCTGTAGAAAAACATGGAACAGAAAATGAGGAATTCTTACATGTCATAAACAACAGATATTTTGAGGAGAAATGGG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU863229 False 487 lncRNA 0.42 1 88861079 88861565
TU863230 False 750 TUCP 0.43 1 88861079 88861828
TU863231 False 287 lncRNA 0.43 1 88861279 88861565
TU863232 True 550 TUCP 0.44 1 88861279 88861828

Neighbor

gene id symbol gene type direction distance location
LOC110510805 LOC105030507 coding upstream 193759 88646400 ~ 88667320 (+)
LOC110510807 LOC106569716 coding upstream 218317 88625441 ~ 88642762 (+)
acss2l LOC106596660 coding upstream 801376 88017220 ~ 88059703 (+)
LOC110513441 apcdd1 coding upstream 1085632 87745792 ~ 87775447 (+)
LOC110512127 LOC106591122 coding upstream 1169336 87687931 ~ 87691743 (+)
LOC118965580 NA coding downstream 25269 88886834 ~ 88903834 (+)
slc25a24l LOC106569755 coding downstream 213059 89074624 ~ 89139486 (+)
fubp1 LOC106569753 coding downstream 233271 89094836 ~ 89113049 (+)
usp33 LOC106569751 coding downstream 287425 89148990 ~ 89223706 (+)
LOC110530860 LOC106569749 coding downstream 363524 89225089 ~ 89291341 (+)
G759597 NA non-coding upstream 388 88860332 ~ 88860691 (+)
G759596 NA non-coding upstream 2356 88858350 ~ 88858723 (+)
G759592 NA non-coding upstream 12427 88848438 ~ 88848652 (+)
G759586 NA non-coding upstream 26146 88834643 ~ 88834933 (+)
G759582 NA non-coding upstream 34800 88826053 ~ 88826279 (+)
G759577 NA non-coding downstream 457 88862022 ~ 88863062 (+)
G759608 NA non-coding downstream 34384 88895949 ~ 88896189 (+)
G759618 NA non-coding downstream 66511 88928076 ~ 88929046 (+)
G759630 LOC106569748 non-coding downstream 78542 88940107 ~ 88944442 (+)
G759556 NA other upstream 159660 88697974 ~ 88701419 (+)
G759031 LOC106569827 other upstream 750779 88109006 ~ 88110300 (+)
G759020 LOC106569827 other upstream 754132 88082021 ~ 88106947 (+)
G758988 NA other upstream 865934 87991970 ~ 87995145 (+)
G758976 ankrd12 other upstream 889150 87959523 ~ 87971929 (+)
LOC118965583 LOC106569839 other downstream 706438 89560138 ~ 89659347 (+)
G759892 NA other downstream 834855 89696420 ~ 89696907 (+)
G760623 NA other downstream 1298705 90160270 ~ 90208959 (+)
G760718 NA other downstream 1512522 90362653 ~ 90400472 (+)

Expression


Co-expression Network