G759746


Basic Information

Item Value
gene id G759746
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89248480 ~ 89249661 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU863430
GGTTAGTAATGACAGGGTAGTTGGTCTGTGGTGGTAGTGGGGGGTTAGTAATGACAGGGTAGTTAGCCTGTGGTGATAATGGGGGTTAGTGATGACAGGGTAGTTGGTCTGTTGGTCCATTAATTTCCCCATAGGAgtggctgaacgaaccagaggtacCTCATTTccccataggaatggctgaacgaaccagaggtaactcatttcCCCATAGGAgtggctgaacgaaccagaggtacCTCATTTCCCCATAGAgtggctgaacgaaccagaggtaactcatttcCCCATAGGAgtggctgaacgaaccagaggtatCTCATTTccccataggaatggctgaacgaaccagaggtacCTCATTTccccataggaatggctgaacgaaccagaggtacCTCATTTccccataggaatggctgaacgaaccagaggtaactcatttcCCCATAGGAgtggctgaacgaaccagaggtaactcatttcCCCATAGGAgtggctgaacgaaccagaggtatCTCATTTccccataggaatggctgaacgaaccagaggtaactcatttcCCCATAGGAgtggctgaacgaaccagaggtatCTCATCTCTGCGTTTCAGGAGCTCTATTGCCTTTCAATTTCAGGGTGTGACTTTAAATTCCAAGCCAAGACTTGAAAAATCCTAATTGAAAACAGCAGTTTTCATATCTTTAATAGGAATAGGAATAGAAACCCGACCGACTGATTCTAAAACAACCCTCCTATAAAATCCATCCTTGATGGTGCCCAGCTGAGAGTTCAGGCTGAGGGTACCAAGGTTTGGAAAATAGAACTGATCCTTAGGGAGTATCATGTGACATATATTGGTAATATGATTCATGTTGCCAGCTAGAGTGAGATTACTGTGATGAAGAAACTACTGTCGTTAGCTCAGATGAATGCAGGGATCGGAGgttgcatcccaaacggcaccctattccatagtgcactactggcccTGGTCCAGAGTAGTGCAccgtgtagggaatagggggccgtttgggacacagccagCAGTGCTGGGCAGTCAGGTCCTGTTGGGTTGGGTTgaactgggctgggctggg
>TU863431
GGTTAGTAATGACAGGGTAGTTGGTCTGTGGTGGTAGTGGGGGGTTAGTAATGACAGGGTAGTTAGCCTGTGGTGATAATGGGGGTTAGTGATGACAGGGTAGTTGGTCTGTTGGTCCATTAATTTCCCCATAGGAgtggctgaacgaaccagaggtacCTCATTTccccataggaatggctgaacgaaccagaggtaactcatttcCCCATAGGAgtggctgaacgaaccagaggtacCTCATTTCCCCATAGAgtggctgaacgaaccagaggtaactcatttcCCCATAGGAgtggctgaacgaaccagaggtatCTCATTTccccataggaatggctgaacgaaccagaggtaactcatttcCCCATAGGAgtggctgaacgaaccagaggtatCTCATCTCTGCGTTTCAGGAGCTCTATTGCCTTTCAATTTCAGGGTGTGACTTTAAATTCCAAGCCAAGACTTGAAAAATCCTAATTGAAAACAGCAGTTTTCATATCTTTAATAGGAATAGGAATAGAAACCCGACCGACTGATTCTAAAACAACCCTCCTATAAAATCCATCCTTGATGGTGCCCAGCTGAGAGTTCAGGCTGAGGGTACCAAGGTTTGGAAAATAGAACTGATCCTTAGGGAGTATCATGTGACATATATTGGTAATATGATTCATGTTGCCAGCTAGAGTGAGATTACTGTGATGAAGAAACTACTGTCGTTAGCTCAGATGAATGCAGGGATCGGAGgttgcatcccaaacggcaccctattccatagtgcactactggcccTGGTCCAGAGTAGTGCAccgtgtagggaatagggggccgtttgggacacagccagCAGTGCTGGGCAGTCAGGTCCTGTTGGGTTGGGTTgaactgggctgggctggg
>TU863432
GGTTAGTAATGACAGGGTAGTTGGTCTGTGGTGGTAGTGGGGGGTTAGTAATGACAGGGTAGTTAGCCTGTGGTGATAATGGGGGTTAGTGATGACAGGGTAGTTGGTCTGTTGGTCCATTAATTTCCCCATAGGAgtggctgaacgaaccagaggtacCTCATTTccccataggaatggctgaacgaaccagaggtaaCTCATTTccccataggaatggctgaacgaaccagaggtaactcatttcCCCATAGGAgtggctgaacgaaccagaggtaactcatttcCCCATAGGAgtggctgaacgaaccagaggtatCTCATCTCTGCGTTTCAGGAGCTCTATTGCCTTTCAATTTCAGGGTGTGACTTTAAATTCCAAGCCAAGACTTGAAAAATCCTAATTGAAAACAGCAGTTTTCATATCTTTAATAGGAATAGGAATAGAAACCCGACCGACTGATTCTAAAACAACCCTCCTATAAAATCCATCCTTGATGGTGCCCAGCTGAGAGTTCAGGCTGAGGGTACCAAGGTTTGGAAAATAGAACTGATCCTTAGGGAGTATCATGTGACATATATTGGTAATATGATTCATGTTGCCAGCTAGAGTGAGATTACTGTGATGAAGAAACTACTGTCGTTAGCTCAGATGAATGCAGGGATCGGAGgttgcatcccaaacggcaccctattccatagtgcactactggcccTGGTCCAGAGTAGTGCAccgtgtagggaatagggggccgtttgggacacagccagCAGTGCTGGGCAGTCAGGTCCTGTTGGGTTGGGTTgaactgggctgggctggg
>TU863434
GGTTAGTAATGACAGGGTAGTTGGTCTGTGGTGGTAGTGGGGGGTTAGTAATGACAGGGTAGTTAGCCTGTGGTGATAATGGGGGTTAGTGATGACAGGGTAGTTGGTCTGTTGGTCCATTAATTTCCCCATAGGAgtggctgaacgaaccagaggtacCTCATTTccccataggaatggctgaacgaaccagaggtaactcatttcCCCATAGGAgtggctgaacgaaccagaggtaactcatttcCCCATAGGAgtggctgaacgaaccagaggtaactcatttcCCCATAGGAgtggctgaacgaaccagaggtatCTCATTTccccataggaatggctgaacgaaccagaggtaactcatttcCCCATAGGAgtggctgaacgaaccagaggtatCTCATCTCTGCGTTTCAGGAGCTCTATTGCCTTTCAATTTCAGGGTGTGACTTTAAATTCCAAGCCAAGACTTGAAAAATCCTAATTGAAAACAGCAGTTTTCATATCTTTAATAGGAATAGGAATAGAAACCCGACCGACTGATTCTAAAACAACCCTCCTATAAAATCCATCCTTGATGGTGCCCAGCTGAGAGTTCAGGCTGAGGGTACCAAGGTTTGGAAAATAGAACTGATCCTTAGGGAGTATCATGTGACATATATTGGTAATATGATTCATGTTGCCAGCTAGAGTGAGATTACTGTGATGAAGAAACTACTGTCGTTAGCTCAGATGAATGCAGGGATCGGAGgttgcatcccaaacggcaccctattccatagtgcactactggcccTGGTCCAGAGTAGTGCAccgtgtagggaatagggggccgtttgggacacagccagCAGTGCTGGGCAGTCAGGTCCTGTTGGGTTGGGTTgaactgggctgggctggg

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU863430 False 1103 lncRNA 0.48 2 89248480 89249661
TU863431 False 903 lncRNA 0.48 2 89248480 89249661
TU863432 False 824 lncRNA 0.47 3 89248480 89249661
TU863434 True 904 lncRNA 0.48 2 89248480 89249661

Neighbor

gene id symbol gene type direction distance location
usp33 LOC106569751 coding upstream 24774 89148990 ~ 89223706 (+)
fubp1 LOC106569753 coding upstream 135431 89094836 ~ 89113049 (+)
slc25a24l LOC106569755 coding upstream 154077 89074624 ~ 89139486 (+)
LOC118965580 NA coding upstream 344646 88886834 ~ 88903834 (+)
LOC110510805 LOC105030507 coding upstream 581160 88646400 ~ 88667320 (+)
LOC118965581 NA coding downstream 11953 89261614 ~ 89263950 (+)
pigk pigk coding downstream 47291 89296952 ~ 89321553 (+)
LOC118965583 LOC106569839 coding downstream 310477 89560138 ~ 89659347 (+)
yipf1 yipf1 coding downstream 541249 89790910 ~ 89837790 (+)
zgc:113691 LOC106569840 coding downstream 603805 89853466 ~ 89854375 (+)
G759745 NA non-coding upstream 1132 89246325 ~ 89247348 (+)
G759741 NA non-coding upstream 7044 89240459 ~ 89241436 (+)
G759723 NA non-coding upstream 67154 89180675 ~ 89181326 (+)
G759716 NA non-coding upstream 92867 89155016 ~ 89155613 (+)
G759661 NA non-coding downstream 15087 89264748 ~ 89266944 (+)
G759755 NA non-coding downstream 48718 89298379 ~ 89300155 (+)
G759759 NA non-coding downstream 70160 89319821 ~ 89652495 (+)
G759765 NA non-coding downstream 86346 89336007 ~ 89337833 (+)
G759772 NA non-coding downstream 103046 89352707 ~ 89354993 (+)
G759598 NA other upstream 386652 88861079 ~ 88861828 (+)
G759556 NA other upstream 547061 88697974 ~ 88701419 (+)
G759031 LOC106569827 other upstream 1138180 88109006 ~ 88110300 (+)
G759020 LOC106569827 other upstream 1141533 88082021 ~ 88106947 (+)
G759892 NA other downstream 446759 89696420 ~ 89696907 (+)
G760623 NA other downstream 910609 90160270 ~ 90208959 (+)
G760718 NA other downstream 1124426 90362653 ~ 90400472 (+)
LOC110530875 rpl37a other downstream 1450634 90700188 ~ 90709778 (+)

Expression


Co-expression Network