G759847


Basic Information

Item Value
gene id G759847
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89594454 ~ 89608337 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU863552
tctttttacgctgctgctactctctgttcatcatatatgcagagtcactttaaccatatctacatgtacatactacctcaatcagcctgactaacaggtgtctgtatatatctacatgtacatactacctcaatcagcctgactaacaggtgtctgtatatatctacatgtacatactacctcaattggcctgactaacaggtgtctgtatatatctacatgtacatactacctcaatcagcctgactaaccggtgtctgtatatatctacatgtacatactacctcaatcagcctgactaacaggtgtctgtatatatctacatgtacatactacctcaataagcctgactaacaggtgtctgtatatatctacatatacacactacctcaatcagcctgactaacaggtatggagccttgctactcttttttcaaatgtctttctactgtCGTTTTATTCCTttacttacccccccccccccccaccccccacacacacacacacaccttttttttggcaccattggttagagcctgtaagtcagcatttcactgtaagcacctgttgtactcggtgcacgtgacaaataaactttgatttcatTTCAAATTTGATATTtacttgatttgattttgatttgtttagtaaATGTTATAAGGCCCAGCACCAGCCCTAACCCCTGACACTAGCACAATCACCCTGCCCCGCTTCCTGAGTGTAGTTAGGGTTGTCTATGTTCTCCTTGTGTTGGTTCTTCTTGCCAGAGTCTGGAAGGAAAAACAGCACCACACCTGAAAGCATTAGGGTTGAAGCCATGTTTAAAACACATCTACTGACATACTGGATGGACACCTTGAGAAGGGATTTCTTGAGTAAAATGTTTGAAAGCCCTC
>TU863553
tctttttacgctgctgctactctctgttcatcatatatgcagagtcactttaaccatatctacatgtacatactacctcaatcagcctgactaacaggtgtctgtatatatctacatgtacatactacctcaattagcctgactaacaggtgtctgtatatatctacatgtacatactacctcaattggcctgactaacaggtgtctgtatatatctacatgtacatactacctcaatcagcctgactaaccggtgtctgtatatatctacatgtacatactacctcaatcagcctgactaacaggtgtctgtatatatctacatgtacatactacctcaataagcctgactaacaggtgtctgtatatatctacatatacacactacctcaatcagcctgactaacaggtatggagccttgctactcttttttcaaatgtctttctactgtCGTTTTATTCCTttacttacccccccccccccccaccccccacacacacacacacaccttttttttggcaccattggttagagcctgtaagtcagcatttcactgtaagcacctgttgtactcggtgcacgtgacaaataaactttgatttcatTTCAAATTTGATATTtacttgatttgattttgatttgtttagtaaATGTTATAAGGCCCAGCACCAGCCCTAACCCCTGACACTAGCACAATCACCCTGCCCCGCTTCCTGAGTGTAGTTAGGGTTGTCTATGTTCTCCTTGTGTTGGTTCTTCTTGCCAGAGTCTGGAAGGAAAAACAGCACCACACCTGAAAGCATTAGGGTTGAAGCCATGTTTAAAACACATCTACTGACATACTGGATGGACACCTTGAGAAGGGATTTCTTGAGTAAAATGTTTGAAAGCCCTC
>TU863555
tctttttacgctgctgctactctctgttcatcatatatgcagagtcactttaaccatatctacatgtacatactacctcaatcagcctgactaacaggtgtctgtatatatctacatatacacactacctcaatcagcctgactaacaggtatggagccttgctactcttttttcaaatgtctttctactgtCGTTTTATTCCTttacttacccccccccccccccaccccccacacacacacacacaccttttttttggcaccattggttagagcctgtaagtcagcatttcactgtaagcacctgttgtactcggtgcacgtgacaaataaactttgatttcatTTCAAATTTGATATTtacttgatttgattttgatttgtttagtaaATGTTATAAGGCCCAGCACCAGCCCTAACCCCTGACACTAGCACAATCACCCTGCCCCGCTTCCTGAGTGTAGTTAGGGTTGTCTATGTTCTCCTTGTGTTGGTTCTTCTTGCCAGAGTCTGGAAGGAAAAACAGCACCACACCTGAAAGCATTAGGGTTGAAGCCATGTTTAAAACACATCTACTGACATACTGGATGGACACCTTGAGAAGGGATTTCTTGAGTAAAATGTTTGAAAGCCCTC
>TU863556
tctttttacgctgctgctactctctgttcatcatatatgcagagtcactttaaccatatctacatgtacatactacctcaatcagcctgactaacaggtgtctgtatatatctacatatacacactacctcaataagcctgactaacaggtgtctgtatatatctacatatacacactacctcaatcagcctgactaacaggtatggagccttgctactcttttttcaaatgtctttctactgtCGTTTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU863552 False 896 lncRNA 0.41 3 89594454 89608337
TU863553 False 896 lncRNA 0.41 3 89594454 89608337
TU863555 False 636 lncRNA 0.42 3 89594454 89608337
TU863556 True 250 lncRNA 0.38 2 89594454 89607902

Neighbor

gene id symbol gene type direction distance location
LOC118965583 LOC106569839 coding upstream 19290 89560138 ~ 89659347 (+)
pigk pigk coding upstream 272901 89296952 ~ 89321553 (+)
LOC110530860 LOC106569749 coding upstream 303113 89225089 ~ 89291341 (+)
LOC118965581 NA coding upstream 330504 89261614 ~ 89263950 (+)
usp33 LOC106569751 coding upstream 370748 89148990 ~ 89223706 (+)
yipf1 yipf1 coding downstream 182573 89790910 ~ 89837790 (+)
zgc:113691 LOC106569840 coding downstream 245129 89853466 ~ 89854375 (+)
ndc1 ndc1 coding downstream 253484 89861821 ~ 89911594 (+)
best4 LOC106569841 coding downstream 308705 89917042 ~ 89932074 (+)
hectd3 hectd3 coding downstream 323871 89932208 ~ 89947643 (+)
G759813 NA non-coding upstream 91452 89497969 ~ 89503002 (+)
G759805 NA non-coding upstream 161055 89432857 ~ 89433399 (+)
G759798 NA non-coding upstream 176119 89416392 ~ 89418335 (+)
G759790 NA non-coding upstream 194607 89398232 ~ 89399847 (+)
G759785 NA non-coding upstream 209456 89384460 ~ 89384998 (+)
G759857 NA non-coding downstream 7626 89615963 ~ 89616763 (+)
G759862 NA non-coding downstream 13831 89622168 ~ 89622801 (+)
G759869 NA non-coding downstream 28496 89636833 ~ 89638330 (+)
G759873 LOC102202288 non-coding downstream 46442 89654779 ~ 89679102 (+)
G759884 NA non-coding downstream 79791 89688128 ~ 89688933 (+)
slc25a24l LOC106569755 other upstream 500060 89074624 ~ 89139486 (+)
G759598 NA other upstream 732626 88861079 ~ 88861828 (+)
G759556 NA other upstream 893035 88697974 ~ 88701419 (+)
G759031 LOC106569827 other upstream 1484154 88109006 ~ 88110300 (+)
G759020 LOC106569827 other upstream 1487507 88082021 ~ 88106947 (+)
G759892 NA other downstream 88083 89696420 ~ 89696907 (+)
G760623 NA other downstream 551933 90160270 ~ 90208959 (+)
G760718 NA other downstream 765750 90362653 ~ 90400472 (+)
LOC110530875 rpl37a other downstream 1091958 90700188 ~ 90709778 (+)
ndufb3 ndufb3 other downstream 1128954 90737231 ~ 90743084 (+)

Expression


Co-expression Network