XLOC_026553 (ighv6-2)


Basic Information

Item Value
gene id XLOC_026553
gene name ighv6-2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34074278 ~ 34078179 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051732
CTCAGGGAGTTACGTGTATACTGTTGTTTCCTTCAGTTGGATTGTGTTATGTCAAGTGTTCACTGTCAGACTTTCACTCAGTCTCAAGCTGAGTTGAAAAAAACAGGTGAATCTTTTCGTCTGGTATGTACCGCCTCTGGATTTACATTCAGCAGCTGCTATGCAGCTGTGGTGAGACAAGCTCCCGGTAAAGCACTGGAGTGGATTGCATACATCGGCACATACAGTTCTCCTATTTACTATTCTCAGTCAGTCCAGGGAAGGTTCACAGTGTCCAGAGATGATTCCAGCAGTCAGCTGTACCTGCagatgaacaacctcaagactGAAGACACCGCTGTCTATTACTGTGCCAGAGCGACACAGTGCTAA
>TCONS_00051733
ATGTACTTTATACTATTGGGGATCATTTTATCTACTGCGTCCAGTGTATATTCCATTGAGCTGAATCAGCCTGCTTTCAAGTTGGTAAAACCTGCGGAATCATTTTCTCTTGGCTGTAAGATCACTGGATATTCAGCATCAGGTGGCGGCTGTACCAACTGGATACGACACTCAGCTGGAAAAGCCTTGGAATGGATTGGCTGGTTCTGTAGATCTGGAGATACGGGAACCAGCAGCACAATGAAGAATAAGATCAGCTTCACAGCCGAAACATCCAGCAACACAGTTTTTTTACAAGGTCAAAACTTCCAGTCTGAGGACACAGCCGTGTATTATTGTGCACGCAAGA
>TCONS_00051734
atgacaacaataATCAACTCACTCCTGCTGTTACTGTTAATAAATGGTGTTCACTGTCAGACTTTCACTCAGTCTCAAGCTGAGTTGAAAAAAACAGGTGAATCTTTTCGTCTGGTATGTACCGCCTCTGGATTTACATTCAGCAGCTGCTATGCAGCTGTGGTGAGACAAGCTCCCGGTAAAGCACTGGAGTGGATTGCATACATCGGCACATACAGTTCTCCTATTTACTATTCTCAGTCAGTCCAGGGAAGGTTCACAGTGTCCAGAGATGATTCCAGCAGTCAGCTGTACCTGCagatgaacaacctcaagactGAAGACACCGCTGTCTATTACTGTGCCAGAGCGG

Function

symbol description
ighv6-2 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0050871 positive regulation of B cell activation biological_process
GO:0006910 phagocytosis, recognition biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0042742 defense response to bacterium biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0042571 immunoglobulin complex, circulating cellular_component
GO:0034987 immunoglobulin receptor binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040514-24 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000096255 ENSDARG00000096303

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051732 False 372 mRNA 0.46 3 34074278 34078179
TCONS_00051733 False 349 mRNA 0.44 2 34074289 34074806
TCONS_00051734 True 352 mRNA 0.46 2 34075573 34076039

Neighbor

gene id symbol gene type direction distance location
XLOC_026552 ighv8-2 coding downstream 1832 34072012 ~ 34072446 (-)
XLOC_026551 ighv8-3 coding downstream 3827 34070022 ~ 34070451 (-)
XLOC_026550 ighv9-1 coding downstream 4641 34069166 ~ 34069637 (-)
XLOC_026549 ighv10-1 coding downstream 6234 34066951 ~ 34068044 (-)
XLOC_026548 ighv9-2 coding downstream 7730 34066113 ~ 34066548 (-)
XLOC_026555 ighv5-8 coding upstream 2391 34080570 ~ 34081023 (-)
XLOC_026556 ighv4-3 coding upstream 3672 34081851 ~ 34084387 (-)
XLOC_026557 ighv4-9 coding upstream 6682 34084861 ~ 34085336 (-)
XLOC_026558 BX649502.11 coding upstream 7862 34086041 ~ 34086483 (-)
XLOC_026559 ighv4-8 coding upstream 8769 34086948 ~ 34087394 (-)
XLOC_026547 BX649502.5 non-coding downstream 9342 34063955 ~ 34064936 (-)
XLOC_026544 BX649502.10 non-coding downstream 15561 34058679 ~ 34058717 (-)
XLOC_026539 BX649502.4 non-coding downstream 25625 34048205 ~ 34048653 (-)
XLOC_026538 BX649502.6 non-coding downstream 26662 34047179 ~ 34047616 (-)
XLOC_026534 BX649502.8 non-coding downstream 38647 34035192 ~ 34035631 (-)
XLOC_026572 NA non-coding upstream 61458 34139637 ~ 34141181 (-)
XLOC_026580 NA non-coding upstream 562869 34641048 ~ 34641973 (-)
XLOC_026585 NA non-coding upstream 869223 34947402 ~ 34948061 (-)
XLOC_026588 NA non-coding upstream 1486949 35565128 ~ 35574451 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G403293 NA unknown CI01000288 null 70526 ~ 70703 (+)