G759869


Basic Information

Item Value
gene id G759869
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89636833 ~ 89638330 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU863583
TTGATCTCTGTCCTTTTAATAGTCTCTTATTTATGATTTCTCAGGTCGTTCCTGGCTCTCTTCATTCATTTATCCATTCATCCACCCATCATGAGCTAATCTTCAGGCcttgtccatccatccatccatccatccatccatccatccatccatccatccatccatcctcataGAAATATACACATTTATTCCTTACAATCTTCTTCAGGTTTAGAATATAAAACGGGTCCAAGCACAGACagtcatggttctgtcccattgTGTCCTGTCCGTCTGTAGCGGCAAGTCATCAGTCTGTTGTAGTACTGCATGAGGGTCGACAGGGGGCGCTCTAACTGAACACatacagagtgagacagacagagaggagggtgtaGAGTACTGGGCTCAGCTCAGTTTCAGTACTTCTTCCTtccctctgtcagtctgtcagtgtgGTTTCCaacaactcctcctcctcctcctcctcttctTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTGGAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCCTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCCTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAggcctttcctcttcctcctcgtaaAG
>TU863581
ACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCCTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTGGAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGGAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCCTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTGGAGGCCTTTCCTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCCTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCCTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAggcctttcctcttcctcctcgtaaAG
>TU863584
ACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCCTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTGGAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGGAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCCTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTGGAGGCCTTTCCTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCCTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGGAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGGAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTGGAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCCTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCCTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAGGCCTTTCCTCTTCTTCACTAGTGTCTCTGAAggcctttcctcttcctcctcgtaaAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU863583 False 705 lncRNA 0.47 2 89636833 89638330
TU863581 False 564 lncRNA 0.48 2 89637485 89638330
TU863584 True 811 lncRNA 0.48 2 89637485 89638330

Neighbor

gene id symbol gene type direction distance location
LOC118965583 LOC106569839 coding upstream 61669 89560138 ~ 89659347 (+)
pigk pigk coding upstream 315280 89296952 ~ 89321553 (+)
LOC110530860 LOC106569749 coding upstream 345492 89225089 ~ 89291341 (+)
LOC118965581 NA coding upstream 372883 89261614 ~ 89263950 (+)
usp33 LOC106569751 coding upstream 413127 89148990 ~ 89223706 (+)
yipf1 yipf1 coding downstream 152580 89790910 ~ 89837790 (+)
zgc:113691 LOC106569840 coding downstream 215136 89853466 ~ 89854375 (+)
ndc1 ndc1 coding downstream 223491 89861821 ~ 89911594 (+)
best4 LOC106569841 coding downstream 278712 89917042 ~ 89932074 (+)
hectd3 hectd3 coding downstream 293878 89932208 ~ 89947643 (+)
G759862 NA non-coding upstream 14032 89622168 ~ 89622801 (+)
G759857 NA non-coding upstream 20070 89615963 ~ 89616763 (+)
G759850 NA non-coding upstream 26163 89596814 ~ 89610670 (+)
G759847 NA non-coding upstream 28496 89594454 ~ 89608337 (+)
G759846 NA non-coding upstream 31277 89590831 ~ 89605556 (+)
G759873 LOC102202288 non-coding downstream 16449 89654779 ~ 89679102 (+)
G759884 NA non-coding downstream 49798 89688128 ~ 89688933 (+)
G759887 NA non-coding downstream 53219 89691549 ~ 89692102 (+)
G759901 NA non-coding downstream 74861 89713191 ~ 89713407 (+)
G759904 NA non-coding downstream 81195 89719525 ~ 89719885 (+)
slc25a24l LOC106569755 other upstream 542439 89074624 ~ 89139486 (+)
G759598 NA other upstream 775005 88861079 ~ 88861828 (+)
G759556 NA other upstream 935414 88697974 ~ 88701419 (+)
G759031 LOC106569827 other upstream 1526533 88109006 ~ 88110300 (+)
G759020 LOC106569827 other upstream 1529886 88082021 ~ 88106947 (+)
G759892 NA other downstream 58090 89696420 ~ 89696907 (+)
G760623 NA other downstream 521940 90160270 ~ 90208959 (+)
G760718 NA other downstream 735757 90362653 ~ 90400472 (+)
LOC110530875 rpl37a other downstream 1061965 90700188 ~ 90709778 (+)
ndufb3 ndufb3 other downstream 1098961 90737231 ~ 90743084 (+)

Expression


Co-expression Network