G761112 (rpl37a)


Basic Information

Item Value
gene id G761112
gene name rpl37a
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 90700282 ~ 90710266 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU865331
tgaccaataacattttatttttttactccccaaatacaggtacaagattatagcatcatacccaagactcaaggctgtaatcgctactgaaggtgcttcaacaaagcttGGGGatttgagtaaagggtctgaatacttatgtaaatgtgattagttttgtttctttttttctccaaaagcctttctttgctttgtcgttatggggtagtgtgtcaattgagggggaaaaaaaactattaaatccattttaaaataagtctttaacgaaacaaaatgtgtgaatacttcccaaatgcactgtaaccCATCAGTCCCCATCAATGAATCACTCgtatctgcatgtccagccccTATATTCACAATTAAGTGTTTTACCATCTTATCTTCTGTAATGTTTCCACTGCATACGTTTTGGATGAGCTTGTTAATTAATCAGAAAACCAATGGAACAAACCAGAAGTCTGGAGCTCAAacaatattattttttaaaagaGGCTAGAAGTGGGACTGTAGGAGTTAACATCAGCGCCAAGTAACATTCAGACACTCAGGTGGCAGGCAACACACAGGGCTGTACTAACAGCAACACAAGTAGTACAAGTAGACTCTGGTGCTCCAGACTGCTTTTTATTGTGGTAGATGTTCGCCACAGCGTCCAGGTCAAACTGTGCAAAAAAGTGACAGTCTTGATTCTCCGGTAACAGTCTACTGGTCTTTCAGctccttcagtctcctgatggcCGACTTCACGGTGACTGCAGACGTCGTGTTGTATGTCCAGGCGCCTCCAGCAACAGTCTTCATGCAGGATCCACAGTGCCAGATACCAACTGCCCTCCTCTTCATCTTAGTCTTGCCACAGAAGGAGCAGGTGTACTTGGCGTGCTGGCTGATCTCAATCTTTTTCACCATCTTCCTGAGCGACGCGCCGTAACGCGTGCCGTATTTACCCACAATCCCCACCTTCTTGGTGCGCTTGGCCATTGTAGTTCTGGAGACGTAGGTCCAAAAAGGAAGCGCACAGTACGCAGGCG
>TU865328
tgaccaataacattttatttttttactccccaaatacaggtacaagattatagcatcatacccaagactcaaggctgtaatcgctactgaaggtgcttcaacaaagcttGGGGatttgagtaaagggtctgaatacttatgtaaatgtgattagttttgtttctttttttctccaaaagcctttctttgctttgtcgttatggggtagtgtgtcaattgagggggaaaaaaaactattaaatccattttaaaataagtctttaacgaaacaaaatgtgtgaatacttcccaaatgcactgtaaccCATCAGTCCCCATCAATGAATCACTCgtatctgcatgtccagccccTATATTCACAATTAAGTGTTTTACCATCTTATCTTCTGTAATGTTTCCACTGCATACGTTTTGGATGAGCTTGTTAATTAATCAGAAAACCAATGGAACAAACCAGAAGTCTGGAGCTCAAacaatattattttttaaaagaGGCTAGAAGTGGGACTGTAGGAGTTAACATCAGCGCCAAGTAACATTCAGACACTCAGGTGGCAGGCAACACACAGGGCTGTACTAACAGCAACACAAGTAGTACAAGTAGACTCTGGTGCTCCAGACTGCTTTTTATTGTGGTAGATGTTCGCCACAGCGTCCAGGTCAAACTGTGCAAAAAAGTGACAGTCTTGATTCTCCGGTAACAGTCTACTGGTCTTTCAGctccttcagtctcctgatggcCGACTTCACGGTGACTGCAGACGTCGTGCTGGAATTGTATGTCCAGGCGCCTCCAGCAACAGTCTTCATGCAGGATCCACAGTGCCAGATACCAACTGCCCTCCTCTTCATCTTAGTCTGATGATTAAACACAAGTACTGTTAGTAACGTCAGTtcaatactgttattaacctcttaACAGTCCCCCTCCCAAGCTTCATTATGGCACCTCTCATGTTATTAATGTTCCTATACTTCTGAGTATAACCACGTCCAAAGTTTACCCCAGAATC
>TU865329
tgaccaataacattttatttttttactccccaaatacaggtacaagattatagcatcatacccaagactcaaggctgtaatcgctactgaaggtgcttcaacaaagcttGGGGatttgagtaaagggtctgaatacttatgtaaatgtgattagttttgtttctttttttctccaaaagcctttctttgctttgtcgttatggggtagtgtgtcaattgagggggaaaaaaaactattaaatccattttaaaataagtctttaacgaaacaaaatgtgtgaatacttcccaaatgcactgtaaccCATCAGTCCCCATCAATGAATCACTCgtatctgcatgtccagccccTATATTCACAATTAAGTGTTTTACCATCTTATCTTCTGTAATGTTTCCACTGCATACGTTTTGGATGAGCTTGTTAATTAATCAGAAAACCAATGGAACAAACCAGAAGTCTGGAGCTCAAacaatattattttttaaaagaGGCTAGAAGTGGGACTGTAGGAGTTAACATCAGCGCCAAGTAACATTCAGACACTCAGGTGGCAGGCAACACACAGGGCTGTACTAACAGCAACACAAGTAGTACAAGTAGACTCTGGTGCTCCAGACTGCTTTTTATTGTGGTAGATGTTCGCCACAGCGTCCAGGTCAAACTGTGCAAAAAAGTGACAGTCTTGATTCTCCGGTAACAGTCTACTGGTCTTTCAGctccttcagtctcctgatggcCGACTTCACGGTGACTGCAGACGTCGTGTATGTCCAGGCGCCTCCAGCAACAGTCTTCATGCAGGATCCACAGTGCCAGATACCAACTGCCCTCCTCTTCATCTTAGTCTGATGATTAAACACAAGTACTGTTAGTAACGTCAGTtcaatactgttattaacctcttaACAGTCCCCCTCCCAAGCTTCATTATGGCACCTCTCATGTTATTAATGTTCCTATACTTCTGAGTATAACCACGTCCAAAGTTTACCCCAGAATC

Function

symbol description
rpl37a A structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Located in cytosolic ribosome. Part of cytosolic large ribosomal subunit.

NR:

description
putative 60S ribosomal protein L37a isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU865331 False 1034 lncRNA 0.44 4 90700282 90710266
TU865328 False 1013 lncRNA 0.41 2 90702253 90710266
TU865329 True 1004 lncRNA 0.41 2 90702253 90710266

Neighbor

gene id symbol gene type direction distance location
orc2 orc2 coding downstream 5862 90677241 ~ 90694420 (-)
LOC110531063 LOC106591048 coding downstream 336078 90301067 ~ 90364204 (-)
LOC118965587 NA coding downstream 886026 89809305 ~ 89814256 (-)
LOC118965586 NA coding downstream 896345 89800462 ~ 89803937 (-)
LOC110530892 LOC106569833 coding downstream 908583 89773615 ~ 89791699 (-)
LOC110530878 LOC106569723 coding upstream 51093 90761359 ~ 90779222 (-)
bag1 LOC106569734 coding upstream 242726 90952992 ~ 90972453 (-)
LOC110512221 chmp5 coding upstream 274316 90984582 ~ 91010533 (-)
oprk1 LOC105007147 coding upstream 335774 91046040 ~ 91058874 (-)
LOC110531054 vath coding upstream 393456 91103722 ~ 91207642 (-)
G761144 NA non-coding downstream 672 90699242 ~ 90699610 (-)
G761117 NA non-coding downstream 2537 90675201 ~ 90697745 (-)
G761123 NA non-coding downstream 34108 90665562 ~ 90666174 (-)
G761099 LOC106569720 non-coding downstream 37015 90662915 ~ 90663267 (-)
G761121 NA non-coding downstream 42125 90657904 ~ 90658157 (-)
G761156 NA non-coding upstream 14741 90725007 ~ 90725503 (-)
G761157 NA non-coding upstream 19917 90730183 ~ 90733082 (-)
G761114 NA non-coding upstream 20154 90730420 ~ 90735867 (-)
G761158 ndufb3 non-coding upstream 27109 90737375 ~ 90743084 (-)
G761176 NA non-coding upstream 85881 90796147 ~ 90797574 (-)
G761034 NA other downstream 47542 90635679 ~ 90652740 (-)
G760971 NA other downstream 358979 90340812 ~ 90341303 (-)
G760362 NA other downstream 1164929 89534623 ~ 89535353 (-)
LOC118965582 st6galnac5 other downstream 1292780 89352710 ~ 89408042 (-)
G760306 NA other downstream 1367506 89331281 ~ 89332776 (-)
G761467 NA other upstream 236213 90946479 ~ 90948106 (-)
G761504 NA other upstream 345481 91055747 ~ 91111937 (-)
G761604 NA other upstream 550813 91261079 ~ 91272370 (-)

Expression

G761112(rpl37a) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 300.
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G761112(rpl37a) Expression in each Bioproject

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G761112(rpl37a) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 7500.
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Co-expression Network