XLOC_026563 (ighv6-1)



Basic Information


Item Value
gene id XLOC_026563
gene name ighv6-1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34095514 ~ 34103365 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00051747
GACAACAAGCTGGAAAACCTCTTGTCTGTGGTTAAAAAACCAGGAGAGTCCCATTCACTTACATGTTCAATAGCAGGATTTACATTCAGTAGCCTTTATTTACACTGGATCAGACAGAGCCCTGGAAAAGCACTGGAGTGGATTGCATACATCAGCACACAAAGTTCTCCTATTTACTATTCTCAGTCAGTCCAGGGAAGGTTCACAGTGTCCAGAGATGATTCCAGCAGTCAGCTGTACCTGCagatgaacaacctcaagactGAAGACACTGCTGTCTATTACTGTggctctcggaccttttgggctcagggctctctcccgggacagcatgcctaa
>TCONS_00051750
atgtttcatattttcatgATTCTGAGCATTTTATCATGTACTAAATGTCAGACATTTACTCAGTCTGAAGCTGTGGTTAAAAAACCAGGAGAGTCCCATTCACTTACATGTTCAATAGCAGGATTTACATTCAGTAGCCTTTATTTACACTGGATCAGACAGAGCCCTGGAAAAGCACTGGAGTGGATTGCATACATCAGCACACAAAGTTCTCCTATTTACTATTCTCAGTCAGTCCAGGGAAGGTTCACAGTGTCCAGAGATGATTCCAGCAGTCAGCTGTACCTGCagatgaacaacctcaagactGAAGACACTGCTGTCTATTACTGTGCTAAAGAGA
>TCONS_00051752
ATGAAGAATGCTCTCTGCTTACTGCTGCTCTCATTCAGTCTACAGTGTTTAAAATGTCAAAGTATGGAGTCGATTGAAAGCTCAGTTCAGAGAAAGCCTGGAGAAACTCTGACTCTGTCCTGTAGAGGATCTGGGTTGACGTTTAGCTCCTATTACATGAACTGGATCAGACAACAAGCTGGAAAACCTCTTGTGTGGATTGGATACACTGGCCAATATGCTGAATCCTTCAAAAGAAGAGCTGAAATCACCAGAGATAATTCAAGAGTATGACATATCTGAAACTATCAGGCCTGACAGCAGAAGATTCAGCCGTGTATTACTGTGCAAGACAAT

Function


symbol description
ighv6-1 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0050871 positive regulation of B cell activation biological_process
GO:0006910 phagocytosis, recognition biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0042742 defense response to bacterium biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0042571 immunoglobulin complex, circulating cellular_component
GO:0034987 immunoglobulin receptor binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040514-23 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00051747 False 339 mRNA 0.47 3 34095514 34103123
TCONS_00051750 False 343 mRNA 0.41 2 34100272 34100700
TCONS_00051752 True 336 IG_V_pseudogene 0.42 2 34102957 34103365

Neighbor


gene id symbol gene type direction distance location
XLOC_026515 ighv1-4 coding downstream 293 33963247 ~ 34095221 (-)
XLOC_026562 ighv4-6 coding downstream 2600 34092458 ~ 34092914 (-)
XLOC_026561 si:dkey-204f11.13 coding downstream 4158 34091300 ~ 34091356 (-)
XLOC_026560 ighv4-7 coding downstream 5058 34089983 ~ 34090456 (-)
XLOC_026559 ighv4-8 coding downstream 8120 34086948 ~ 34087394 (-)
XLOC_026567 ighv5-1 coding upstream 2681 34106046 ~ 34106471 (-)
XLOC_026568 ighv4-3 coding upstream 3832 34107197 ~ 34107685 (-)
XLOC_026569 ighv4-2 coding upstream 10045 34113410 ~ 34113838 (-)
XLOC_026570 ighv4-1 coding upstream 12073 34115438 ~ 34115886 (-)
XLOC_026571 clpp coding upstream 26140 34129505 ~ 34136778 (-)
XLOC_026558 BX649502.11 non-coding downstream 9031 34086041 ~ 34086483 (-)
XLOC_026547 BX649502.5 non-coding downstream 30578 34063955 ~ 34064936 (-)
XLOC_026544 BX649502.10 non-coding downstream 36797 34058679 ~ 34058717 (-)
XLOC_026539 BX649502.4 non-coding downstream 46861 34048205 ~ 34048653 (-)
XLOC_026538 BX649502.6 non-coding downstream 47898 34047179 ~ 34047616 (-)
XLOC_026572 NA non-coding upstream 36272 34139637 ~ 34141181 (-)
XLOC_026580 NA non-coding upstream 537683 34641048 ~ 34641973 (-)
XLOC_026585 NA non-coding upstream 844037 34947402 ~ 34948061 (-)
XLOC_026588 NA non-coding upstream 1461763 35565128 ~ 35574451 (-)
XLOC_026600 NA non-coding upstream 2216874 36320239 ~ 36323625 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) LOC117598907 NA misc NC_047607.1 CM018553.1 22231972 ~ 22232468 (-)