XLOC_002657



Basic Information


Item Value
gene id XLOC_002657
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15032972 ~ 15034960 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00006014
ACAACTCAACCACCACATCAAGGTTTTGTCAACAAGGTAAAGTTTAAAGGGAAGTCAGGCAAAAggcatttcatatttaaaaaggcaaagaattaacagatttatgaaaTAAGGAAACAATTAGTAAGAAACTAATGATATATTAGTTAATTAAAGCATGTGGTCTTTGAACTCCTTAAGCCAGCGATGCACTAAGTTAACTTCAAAGTATTAGTGGCAATGAAATCGATCCGTGTTGTCACCTCGCATTGGCTGCGTCTGGTCCCGTCTGGACCCCAAAACCATGTGTGAACACATGTTCTGCACCGGAGTAAGCAGATGTATCTGCACCTGCAGGTGGCAGTATCTGTAGTCATTCCATAATGGGAAACCAGAAATAGTGCTGCACAAGGTACACACCATAAACAAGGCAACGTTTGCATACCATTTTCACAGTGACTCTCATTCAACAGAGGGATTCACTTATGCAAATATGCTTGATGCTCTGATAATTAATTTTCAgatgatttattttctttgaattgatactagcctttcgtgtatacaaaacactcttatttacttacattttgtttgctttttaaaaacacctttgaaggtacaacatgtttagaaattacatagaataaatgcatttccttatcaagcaatatttaccttgatttttcttcaagtgttgttgataaaaatttaaattccctccatcttgaagatgttctcagatggcactattcattttcatagaaaccacatgaataatctttcacacaaactttataaagcaacattacagtgttgtggtggaaattacaaatatactgtgcgacagctattttttctataaaaaaaattaattgataatagtctcacattaataactataaaatattgaacttatttcactagtgcttcattaagatacattaatagataccagataaataatattttaaaatgttattttcattgttgaagtttaaaactctgggtgtgcgacaaggtgaaaacagtgattttgactactaaaaggaggttgaataatatgaaaaatatataatagaaagctggtatttttttaaagtaggttttattgttagtttgacaaagagagaggaatttgaacaaaaatTATATCTATTTTTGCATATATGATTGAAGGACATACAAGTGCCAGTAGTGGAAGAATTACCCTTATGCTTGTACTCTGATTCATCAACCAATCCAAGTCAACATGTGGAGATCATCAAACAAACATGGCAGTAGCTCACAGATGGCCTGATGAAAACCAAACCAAACTCTAAACCAGGCCTAAACTACAGCCACAATGTAAGAGGATCAATCACACACTTGCCAAAAATTTATACACTTCTTTCTCGATTACACTGAAACATCCCTGTGAAGGAATCAGCATGACAAGAACAGGTGTGTTGGAGTAGTTACTGGTAATACGGTTTAGTTTTTAGAACATATTCATATTTTTTGAAAACAATCTCACCAGGATTGCACTGAAGTTCACTATCTTTTTCATCAGATCCATTCCTACAGTCCCTGTCTCCATCAGATGACTGTACCGGACACACTTATCCAACCTCATCAGAACCATAGtgagagtggccatcacaaacaTAAGCCTTAGCAATACACTTCCTCCGGTCCTTACAGAGGAAGTCACCTTTATGATCAATAGAGTCAGATTACATATTTTGGTTAATGGCTGGAGAAGAAGAACAACTGGAGAGAAGGTAAAATAGACTATGATTAAAGGGTAGAAAAATAAGAAGGTGGTATGTCAGATATGGAAAAAGAACAAGGAGATCCATAAGGAAAGAAAGAGCAAGGTAAAAAAATGTGGAGAAGAACAAAATGTCACAGTAAATCTGTACTGGTACttaccttaagacttgtttggaGGAAGAATGGGAGAAAATTACACCTAAAACACTTTATCACTTGGTGTCCCTAAACGTCTTGTAAGTGTTGTGAAATAGA

Function


GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0031224 intrinsic component of membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008395 steroid hydroxylase activity molecular_function
GO:0008131 primary amine oxidase activity molecular_function
GO:0022804 active transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0008509 anion transmembrane transporter activity molecular_function
GO:0008514 organic anion transmembrane transporter activity molecular_function
GO:0015291 secondary active transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00006014 True 1989 lncRNA 0.35 1 15032972 15034960

Neighbor


gene id symbol gene type direction distance location
XLOC_002654 smad2 coding downstream 89691 14871136 ~ 14943281 (-)
XLOC_002655 si:dkey-88l16.2 coding downstream 92626 14936045 ~ 14940346 (-)
XLOC_002653 CT027820.1 coding downstream 300573 14732283 ~ 14732399 (-)
XLOC_002652 skor2 coding downstream 475994 14547941 ~ 14556978 (-)
XLOC_002651 ier3ip1 coding downstream 487314 14542726 ~ 14545658 (-)
XLOC_002658 cldn23a coding upstream 11877 15046837 ~ 15048781 (-)
XLOC_002659 cldn23b coding upstream 15509 15050469 ~ 15053614 (-)
XLOC_002660 CT027832.1 coding upstream 47450 15082410 ~ 15086297 (-)
XLOC_002661 spp1 coding upstream 85751 15120711 ~ 15128771 (-)
XLOC_002662 pum3 coding upstream 286562 15321522 ~ 15340450 (-)
XLOC_002648 BX000705.1 non-coding downstream 1101276 13931569 ~ 13931696 (-)
XLOC_002647 BX293994.1 non-coding downstream 1420724 13612133 ~ 13612248 (-)
XLOC_002646 BX293994.2 non-coding downstream 1425829 13607027 ~ 13607143 (-)
XLOC_002643 CR759894.1 non-coding downstream 1727789 13305065 ~ 13305183 (-)
XLOC_002666 NA non-coding upstream 681779 15716739 ~ 15724104 (-)
XLOC_002673 NA non-coding upstream 1971265 17006225 ~ 17010898 (-)
XLOC_002674 NA non-coding upstream 1981839 17016799 ~ 17027111 (-)
XLOC_002676 NA non-coding upstream 2050564 17085524 ~ 17088911 (-)

Expression



Co-expression Network