XLOC_026571 (clpp)


Basic Information

Item Value
gene id XLOC_026571
gene name clpp
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34129505 ~ 34136778 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051757
ttagtatCACTTAGTAATATTCAgcatccaataaataaatataatgagcttatcttatattatgttttatatcttttaattttgttattattatttctattattattattattattaattttattattattataattattgtaatgttgcttattcttttttatttcattgttcaGTATTACAAAAAAGGCTTGATTCGTTTAAAGACACTGCACGTTTATTTAGAGTCTGCAAATATTTTCTCGACTTCGCAATCTCTACCATCAACAAGAGCTGGCTTCACTACCGAGTTGCAGAGCATCACATCCGGGTCGCGAGGGGTCGCGTGAGGGTTGCTCAACAGAAACATGCTACGTAGGGTCTTACGATGTGGTGTTTCTACACTGAGAGTCAGTAGGTCAGTTCATCAGAGTTCTCCATGGAGCAGTCCACTCATACCTATAGTTGTGGAGCAGACGGGACGAGGAGAGCGTGCTTATGACATCTACTCAAGGCTGCTTCGAGAGAGAATCATCTGCGTTATGGGTCCTATCGATGACTCTGTAGCTTCTCTGGTCATTGCTCAACTGCTCTTTCTTCAATCAGAGAGCAACAATAAGCCGATTCACATGTACATCAACAGCCCTGGTGGTGTGGTCACGTCTGGACTTGCCATCTATGATACTATGCAGTACATCCTAAATCCCATCTCCACCTGGTGTGTGGGTCAGGCAGCCAGCATGGGCAGTCTGCTTCTGGCCGCAGGAACCGCCGGAATGAGGCATTCCCTGCCTAATGCCCGAATCATGGTGCACCAGCCTTCTGGAGGAGCGAGGGGCCAAGCGACAGATATTGCCATCCAGGCAGAGGAGATTCTCAAACTGAAAAGACAGATCAACAACATCTACAGCAAACACACAGGACAGCTTCTGGAGACTATAGAGAGTGTGATGGAGAGAGACAGATACATGAGCCCAATGGAAGCACAGGATTTCGGGATCATTGATAAAGTCCTGGTTCACCCACCACAGGCTGGGCAAGATGAGCCAGAGCTCGTTCAGAAGGAACCTAGCAGCCCTGCGAGCTCCTCCACATCTCCTCAACCGCAGACCTCAGAGTCAGGCCAGTCCTCCAGCAGCCCTCCATCCTCACACAAGCCTGAGCCCTGAAACAGACTTCACTATTATGCTATGTCTGCTGTGACAGATGATTTAGGGCAAAGCCAAACTCGCACATCAGATCTGGACTTTGGACTTTTCTTTTCTATCTTTGATTTTATGAAGTCTCACAGTACTGGAGTGTGGACACTACAGATGCAAGCGTAACCATAGTCCAGCCCTTCTAATTGTTTGCTGTATGTTTAGCAAACCAACTTGGTGACAGTATTGGCTTTGATGTCTGTATATTACTTGGATGGAGTGTGTTACCATGTTACACAATAGCTCTTTGGTTTAATGTGATCCCTTAAATGAGAGGTTTTATagaaattaattcaaataaatcacttGGTAAATTATG
>TCONS_00051758
GTCGCGAGGGGTCGCGTGAGGGTTGCTCAACAGAAACATGCTACGTAGGGTCTTACGATGTGGTGTTTCTACACTGAGAGTCAGTAGGTCAGTTCATCAGAGTTCTCCATGGAGCAGTCCACTCATACCTATAGTTGTGGAGCAGACGGGACGAGGAGAGCGTGCTTATGACATCTACTCAAGGCTGCTTCGAGAGAGAATCATCTGCGTTATGGGTCCTATCGATGACTCTGTAGCTTCTCTGGTCATTGCTCAACTGCTCTTTCTTCAATCAGAGAGCAACAATAAGCCGATTCACATGTACATCAACAGCCCTGGTGGTGTGGTCACGTCTGGACTTGCCATCTATGATACTATGCAGTACATCCTAAATCCCATCTCCACCTGGTGTGTGGGTCAGGCAGCCAGCATGGGCAGTCTGCTTCTGGCCGCAGGAACCGCCGGAATGAGGCATTCCCTGCCTAATGCCCGAATCATGGTGCACCAGCCTTCTGGAGGAGCGAGGGGCCAAGCGACAGATATTGCCATCCAGGCAGAGGAGATTCTCAAACTGAAAAGACAGATCAACAACATCTACAGCAAACACACAGGACAGCTTCTGGAGACTATAGAGAGTGTGATGGAGAGAGACAGATACATGAGCCCAATGGAAGCACAGGATTTCGGGATCATTGATAAAGTCCTGGTTCACCCACCACAGGCTGGGCAAGATGAGCCAGAGCTCGTTCAGAAGGAACCTAGCAGCCCTGCGAGCTCCTCCACATCTCCTCAACCGCAGACCTCAGAGTCAGGCCAGTCCTCCAGCAGCCCTCCATCCTCACACAAGCCTGAGCCCTGAAACAGACTTCACTATTATGCTATGTCTGCTGTGACAGATGATTTAGGGCAAAGCCAAACTCGCACATCAGATCTGGACTTTGGACTTTTCTTTTCTATCTTTGATTTTATGAAGTCTCACAGTACTGGAGTGTGGACACTACAGATGCAAGCGTAACCATAGTCCAGCCCTTCTAATTGTTTGCTGTATGTTTAGCAAACCAACTTGGTGACAGTATTGGCTTTGATGTCTGTATATTACTTGGATGGAGTGTGTTACCATGTTACACAATAGCTCTTTGGTTTAATGTGATCCCTTAAATGAGAGGTTTTATagaaattaattcaaataaatcacttGGT
>TCONS_00051759
CGAGGGGTCGCGTGAGGGTTGCTCAACAGAAACATGCTACGTAGGGTCTTACGATGTGGTGTTTCTACACTGAGAGTCAGTAGGTCAGTTCATCAGAGTTCTCCATGGAGCAGTCCACTCATACCTATAGTTGTGGAGCAGACGGGACGAGGAGAGCGTGCTTATGACATCTACTCAAGGCTGCTTCGAGAGAGAATCATCTGCGTTATGGGTCCTATCGATGACTCTGTAGCTTCTCTGGTCATTGCTCAACTGCTCTTTCTTCAATCAGAGAGCAACAATAAGCCGATTCACATGTACATCAACAGCCCTGGTGGTGTGGTCACGTCTGGACTTGCCATCTATGATACTATGCAGTACATCCTAAATCCCATCTCCACCTGGTGTGTGGGTCAGGCAGCCAGCATGGGCAGTCTGCTTCTGGCCGCAGGAACCGCCGGAATGAGGCATTCCCTGCCTAATGCCCGAATCATGGTGCACCAGCCTTCTGGAGGAGCGAGGGGCCAAGCGACAGATATTGCCATCCAGGCAGAGGAGATTCTCAAACTGAAAAGACAGATCAACAACATCTACAGCAAACACACAGGACAGCTTCTGGAGACTATAGGTCTCGGCACTAGATACCCAAAATGCGCTCAGGCTTTCAGCACCACGGAGAGCCGCCTTCAAGTCACCGCGTTTGTGGAGAATTCTC

Function

symbol description
clpp Predicted to enable ATP-dependent peptidase activity; ATPase binding activity; and serine-type endopeptidase activity. Predicted to be involved in protein quality control for misfolded or incompletely synthesized proteins. Predicted to act upstream of or within proteolysis. Predicted to be part of endopeptidase Clp complex. Human ortholog(s) of this gene implicated in Perrault syndrome. Orthologous to human CLPP (caseinolytic mitochondrial matrix peptidase proteolytic subunit).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins biological_process
GO:0009368 endopeptidase Clp complex cellular_component
GO:0004176 ATP-dependent peptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0051117 ATPase binding molecular_function

KEGG:

id description
ko04112 Cell cycle - Caulobacter
ko04212 Longevity regulating pathway - worm
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-030131-7860 Predicted to enable ATP-dependent peptidase activity; ATPase binding activity; and serine-type endopeptidase activity. Predicted to be involved in protein quality control for misfolded or incompletely synthesized proteins. Predicted to act upstream of or within proteolysis. Predicted to be part of endopeptidase Clp complex. Human ortholog(s) of this gene implicated in Perrault syndrome. Orthologous to human CLPP (caseinolytic mitochondrial matrix peptidase proteolytic subunit).

Ensembl:

ensembl_id ENSDARG00000020679

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051757 False 1497 mRNA 0.43 8 34129505 34136778
TCONS_00051758 False 1179 mRNA 0.48 7 34129513 34136372
TCONS_00051759 True 694 mRNA 0.52 7 34131872 34136368
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_026570 ighv4-1 coding downstream 13619 34115438 ~ 34115886 (-)
XLOC_026569 ighv4-2 coding downstream 15667 34113410 ~ 34113838 (-)
XLOC_026568 ighv4-3 coding downstream 21820 34107197 ~ 34107685 (-)
XLOC_026567 ighv5-1 coding downstream 23034 34106046 ~ 34106471 (-)
XLOC_026566 ighv5-2 coding downstream 27430 34101631 ~ 34102075 (-)
XLOC_026572 NA coding upstream 2859 34139637 ~ 34141181 (-)
XLOC_026573 yipf2 coding upstream 37226 34174004 ~ 34180464 (-)
XLOC_026574 tnrc6c1 coding upstream 121977 34258755 ~ 34337969 (-)
XLOC_026575 sept9a coding upstream 315558 34452336 ~ 34586403 (-)
XLOC_026576 si:ch211-165d12.4 coding upstream 451210 34587988 ~ 34593639 (-)
XLOC_026558 BX649502.11 non-coding downstream 43022 34086041 ~ 34086483 (-)
XLOC_026547 BX649502.5 non-coding downstream 64569 34063955 ~ 34064936 (-)
XLOC_026544 BX649502.10 non-coding downstream 70788 34058679 ~ 34058717 (-)
XLOC_026539 BX649502.4 non-coding downstream 80852 34048205 ~ 34048653 (-)
XLOC_026538 BX649502.6 non-coding downstream 81889 34047179 ~ 34047616 (-)
XLOC_026580 NA non-coding upstream 504270 34641048 ~ 34641973 (-)
XLOC_026585 NA non-coding upstream 810624 34947402 ~ 34948061 (-)
XLOC_026588 NA non-coding upstream 1428350 35565128 ~ 35574451 (-)
XLOC_026600 NA non-coding upstream 2183461 36320239 ~ 36323625 (-)

Expression

Expression of XLOC_026571(clpp) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Expression of XLOC_026571(clpp) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network