XLOC_026572


Basic Information

Item Value
gene id XLOC_026572
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34139637 ~ 34141181 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053066
gttaataatagtaaaaagatAGTATAATGGTATGGGAGAGATACTGATAATAGTAATGGAAAATAAACTAGTATCTAAAAAAGTAGGCTACTAGTAGCATGAAAATATATTGAAAGTTAAATCAGCTTGCCATACTGCTTAGAGTTAGCAGGGAATCAAAAATACGGATGTGGAACAGTTTGGAGACTTTTAAGCGGATTATGATTTATTGATTGTTGACTTAGATTATCATACACCTCAAAAACGTACTGAAACATATTGCTGTTGGCAGACAACCTTTGATAGCACTCGATTAAACGCCAGCTGTCATCGTTTGGTGAAAACGAAGcttagtccctgatttatcagaggtcaccacaacggaatgaacccccaactattccagtatatcttttacgcagcggattattcagttcacctatggtgcttgtctttggactgtgggggaaaccagagcaccaggagaaaacccatgcgaacacgggaagaacatgcaaactcctgactttttgaccttcttgttgtgaggcaacagtgctaaccactgagacaccgtgCTGCCCATgcaggcccggcgctacgggggggcaaaggggggcattgccccctcagaaagagtttg

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053066 True 622 lncRNA 0.42 2 34139637 34141181

Neighbor

gene id symbol gene type direction distance location
XLOC_026571 clpp coding downstream 2859 34129505 ~ 34136778 (-)
XLOC_026570 ighv4-1 coding downstream 23751 34115438 ~ 34115886 (-)
XLOC_026569 ighv4-2 coding downstream 25799 34113410 ~ 34113838 (-)
XLOC_026568 ighv4-3 coding downstream 31952 34107197 ~ 34107685 (-)
XLOC_026567 ighv5-1 coding downstream 33166 34106046 ~ 34106471 (-)
XLOC_026573 yipf2 coding upstream 32823 34174004 ~ 34180464 (-)
XLOC_026574 tnrc6c1 coding upstream 117574 34258755 ~ 34337969 (-)
XLOC_026575 sept9a coding upstream 311155 34452336 ~ 34586403 (-)
XLOC_026576 si:ch211-165d12.4 coding upstream 446807 34587988 ~ 34593639 (-)
XLOC_026577 nmrk1 coding upstream 456560 34597741 ~ 34599662 (-)
XLOC_026558 BX649502.11 non-coding downstream 53154 34086041 ~ 34086483 (-)
XLOC_026547 BX649502.5 non-coding downstream 74701 34063955 ~ 34064936 (-)
XLOC_026544 BX649502.10 non-coding downstream 80920 34058679 ~ 34058717 (-)
XLOC_026539 BX649502.4 non-coding downstream 90984 34048205 ~ 34048653 (-)
XLOC_026538 BX649502.6 non-coding downstream 92021 34047179 ~ 34047616 (-)
XLOC_026580 NA non-coding upstream 499867 34641048 ~ 34641973 (-)
XLOC_026585 NA non-coding upstream 806221 34947402 ~ 34948061 (-)
XLOC_026588 NA non-coding upstream 1423947 35565128 ~ 35574451 (-)
XLOC_026600 NA non-coding upstream 2179058 36320239 ~ 36323625 (-)
XLOC_026606 NA non-coding upstream 2441919 36583100 ~ 36587136 (-)

Expression


Co-expression Network